data_9L2Z # _model_server_result.job_id 7tI6TwuSXYRWBDjMu_WP5g _model_server_result.datetime_utc '2025-07-17 18:47:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9L2Z # _exptl.entry_id 9L2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-NITROPHENYL)ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.28 _cell.angle_gamma 90 _cell.entry_id 9L2Z _cell.length_a 41.885 _cell.length_b 41.141 _cell.length_c 72.16 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 D O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? # _chem_comp.formula 'C8 H7 N O4' _chem_comp.formula_weight 181.145 _chem_comp.id MNP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-NITROPHENYL)ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MNP sing 237 n n C1 O1 MNP doub 238 n n C1 O2 MNP sing 239 n n C2 C1' MNP sing 240 n n C2 H21 MNP sing 241 n n C2 H22 MNP sing 242 n n C1' C2' MNP doub 243 n y C1' C6' MNP sing 244 n y C2' C3' MNP sing 245 n y C2' H2' MNP sing 246 n n C3' N3' MNP sing 247 n n C3' C4' MNP doub 248 n y N3' O3' MNP sing 249 n n N3' O4' MNP doub 250 n n C4' C5' MNP sing 251 n y C4' H4' MNP sing 252 n n C5' C6' MNP doub 253 n y C5' H5' MNP sing 254 n n C6' H6' MNP sing 255 n n O2 HO2 MNP sing 256 n n # _atom_sites.entry_id 9L2Z _atom_sites.fract_transf_matrix[1][1] 0.023875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 MNP A 1 302 302 MNP MNP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 404 HOH HOH . D 4 HOH A 3 403 434 HOH HOH . D 4 HOH A 4 404 410 HOH HOH . D 4 HOH A 5 405 576 HOH HOH . D 4 HOH A 6 406 402 HOH HOH . D 4 HOH A 7 407 408 HOH HOH . D 4 HOH A 8 408 559 HOH HOH . D 4 HOH A 9 409 432 HOH HOH . D 4 HOH A 10 410 570 HOH HOH . D 4 HOH A 11 411 455 HOH HOH . D 4 HOH A 12 412 430 HOH HOH . D 4 HOH A 13 413 413 HOH HOH . D 4 HOH A 14 414 417 HOH HOH . D 4 HOH A 15 415 406 HOH HOH . D 4 HOH A 16 416 411 HOH HOH . D 4 HOH A 17 417 419 HOH HOH . D 4 HOH A 18 418 412 HOH HOH . D 4 HOH A 19 419 563 HOH HOH . D 4 HOH A 20 420 555 HOH HOH . D 4 HOH A 21 421 415 HOH HOH . D 4 HOH A 22 422 503 HOH HOH . D 4 HOH A 23 423 439 HOH HOH . D 4 HOH A 24 424 414 HOH HOH . D 4 HOH A 25 425 407 HOH HOH . D 4 HOH A 26 426 425 HOH HOH . D 4 HOH A 27 427 473 HOH HOH . D 4 HOH A 28 428 452 HOH HOH . D 4 HOH A 29 429 403 HOH HOH . D 4 HOH A 30 430 421 HOH HOH . D 4 HOH A 31 431 424 HOH HOH . D 4 HOH A 32 432 458 HOH HOH . D 4 HOH A 33 433 428 HOH HOH . D 4 HOH A 34 434 448 HOH HOH . D 4 HOH A 35 435 423 HOH HOH . D 4 HOH A 36 436 493 HOH HOH . D 4 HOH A 37 437 496 HOH HOH . D 4 HOH A 38 438 460 HOH HOH . D 4 HOH A 39 439 416 HOH HOH . D 4 HOH A 40 440 442 HOH HOH . D 4 HOH A 41 441 459 HOH HOH . D 4 HOH A 42 442 553 HOH HOH . D 4 HOH A 43 443 443 HOH HOH . D 4 HOH A 44 444 427 HOH HOH . D 4 HOH A 45 445 420 HOH HOH . D 4 HOH A 46 446 481 HOH HOH . D 4 HOH A 47 447 482 HOH HOH . D 4 HOH A 48 448 468 HOH HOH . D 4 HOH A 49 449 453 HOH HOH . D 4 HOH A 50 450 451 HOH HOH . D 4 HOH A 51 451 484 HOH HOH . D 4 HOH A 52 452 447 HOH HOH . D 4 HOH A 53 453 444 HOH HOH . D 4 HOH A 54 454 454 HOH HOH . D 4 HOH A 55 455 435 HOH HOH . D 4 HOH A 56 456 446 HOH HOH . D 4 HOH A 57 457 445 HOH HOH . D 4 HOH A 58 458 456 HOH HOH . D 4 HOH A 59 459 429 HOH HOH . D 4 HOH A 60 460 431 HOH HOH . D 4 HOH A 61 461 438 HOH HOH . D 4 HOH A 62 462 422 HOH HOH . D 4 HOH A 63 463 474 HOH HOH . D 4 HOH A 64 464 463 HOH HOH . D 4 HOH A 65 465 464 HOH HOH . D 4 HOH A 66 466 479 HOH HOH . D 4 HOH A 67 467 502 HOH HOH . D 4 HOH A 68 468 437 HOH HOH . D 4 HOH A 69 469 467 HOH HOH . D 4 HOH A 70 470 462 HOH HOH . D 4 HOH A 71 471 494 HOH HOH . D 4 HOH A 72 472 450 HOH HOH . D 4 HOH A 73 473 436 HOH HOH . D 4 HOH A 74 474 471 HOH HOH . D 4 HOH A 75 475 449 HOH HOH . D 4 HOH A 76 476 476 HOH HOH . D 4 HOH A 77 477 409 HOH HOH . D 4 HOH A 78 478 517 HOH HOH . D 4 HOH A 79 479 470 HOH HOH . D 4 HOH A 80 480 508 HOH HOH . D 4 HOH A 81 481 497 HOH HOH . D 4 HOH A 82 482 507 HOH HOH . D 4 HOH A 83 483 472 HOH HOH . D 4 HOH A 84 484 515 HOH HOH . D 4 HOH A 85 485 461 HOH HOH . D 4 HOH A 86 486 457 HOH HOH . D 4 HOH A 87 487 518 HOH HOH . D 4 HOH A 88 488 469 HOH HOH . D 4 HOH A 89 489 489 HOH HOH . D 4 HOH A 90 490 549 HOH HOH . D 4 HOH A 91 491 478 HOH HOH . D 4 HOH A 92 492 491 HOH HOH . D 4 HOH A 93 493 426 HOH HOH . D 4 HOH A 94 494 486 HOH HOH . D 4 HOH A 95 495 488 HOH HOH . D 4 HOH A 96 496 511 HOH HOH . D 4 HOH A 97 497 405 HOH HOH . D 4 HOH A 98 498 542 HOH HOH . D 4 HOH A 99 499 475 HOH HOH . D 4 HOH A 100 500 495 HOH HOH . D 4 HOH A 101 501 505 HOH HOH . D 4 HOH A 102 502 547 HOH HOH . D 4 HOH A 103 503 418 HOH HOH . D 4 HOH A 104 504 558 HOH HOH . D 4 HOH A 105 505 501 HOH HOH . D 4 HOH A 106 506 498 HOH HOH . D 4 HOH A 107 507 504 HOH HOH . D 4 HOH A 108 508 520 HOH HOH . D 4 HOH A 109 509 519 HOH HOH . D 4 HOH A 110 510 499 HOH HOH . D 4 HOH A 111 511 492 HOH HOH . D 4 HOH A 112 512 506 HOH HOH . D 4 HOH A 113 513 509 HOH HOH . D 4 HOH A 114 514 528 HOH HOH . D 4 HOH A 115 515 597 HOH HOH . D 4 HOH A 116 516 516 HOH HOH . D 4 HOH A 117 517 513 HOH HOH . D 4 HOH A 118 518 521 HOH HOH . D 4 HOH A 119 519 480 HOH HOH . D 4 HOH A 120 520 514 HOH HOH . D 4 HOH A 121 521 490 HOH HOH . D 4 HOH A 122 522 557 HOH HOH . D 4 HOH A 123 523 512 HOH HOH . D 4 HOH A 124 524 539 HOH HOH . D 4 HOH A 125 525 526 HOH HOH . D 4 HOH A 126 526 538 HOH HOH . D 4 HOH A 127 527 527 HOH HOH . D 4 HOH A 128 528 546 HOH HOH . D 4 HOH A 129 529 524 HOH HOH . D 4 HOH A 130 530 465 HOH HOH . D 4 HOH A 131 531 433 HOH HOH . D 4 HOH A 132 532 531 HOH HOH . D 4 HOH A 133 533 533 HOH HOH . D 4 HOH A 134 534 586 HOH HOH . D 4 HOH A 135 535 536 HOH HOH . D 4 HOH A 136 536 522 HOH HOH . D 4 HOH A 137 537 510 HOH HOH . D 4 HOH A 138 538 525 HOH HOH . D 4 HOH A 139 539 551 HOH HOH . D 4 HOH A 140 540 500 HOH HOH . D 4 HOH A 141 541 537 HOH HOH . D 4 HOH A 142 542 543 HOH HOH . D 4 HOH A 143 543 441 HOH HOH . D 4 HOH A 144 544 540 HOH HOH . D 4 HOH A 145 545 529 HOH HOH . D 4 HOH A 146 546 535 HOH HOH . D 4 HOH A 147 547 571 HOH HOH . D 4 HOH A 148 548 548 HOH HOH . D 4 HOH A 149 549 574 HOH HOH . D 4 HOH A 150 550 545 HOH HOH . D 4 HOH A 151 551 554 HOH HOH . D 4 HOH A 152 552 580 HOH HOH . D 4 HOH A 153 553 565 HOH HOH . D 4 HOH A 154 554 534 HOH HOH . D 4 HOH A 155 555 550 HOH HOH . D 4 HOH A 156 556 556 HOH HOH . D 4 HOH A 157 557 573 HOH HOH . D 4 HOH A 158 558 564 HOH HOH . D 4 HOH A 159 559 544 HOH HOH . D 4 HOH A 160 560 583 HOH HOH . D 4 HOH A 161 561 566 HOH HOH . D 4 HOH A 162 562 594 HOH HOH . D 4 HOH A 163 563 575 HOH HOH . D 4 HOH A 164 564 562 HOH HOH . D 4 HOH A 165 565 541 HOH HOH . D 4 HOH A 166 566 561 HOH HOH . D 4 HOH A 167 567 477 HOH HOH . D 4 HOH A 168 568 596 HOH HOH . D 4 HOH A 169 569 560 HOH HOH . D 4 HOH A 170 570 578 HOH HOH . D 4 HOH A 171 571 530 HOH HOH . D 4 HOH A 172 572 588 HOH HOH . D 4 HOH A 173 573 599 HOH HOH . D 4 HOH A 174 574 569 HOH HOH . D 4 HOH A 175 575 466 HOH HOH . D 4 HOH A 176 576 577 HOH HOH . D 4 HOH A 177 577 579 HOH HOH . D 4 HOH A 178 578 581 HOH HOH . D 4 HOH A 179 579 523 HOH HOH . D 4 HOH A 180 580 590 HOH HOH . D 4 HOH A 181 581 483 HOH HOH . D 4 HOH A 182 582 593 HOH HOH . D 4 HOH A 183 583 568 HOH HOH . D 4 HOH A 184 584 532 HOH HOH . D 4 HOH A 185 585 567 HOH HOH . D 4 HOH A 186 586 485 HOH HOH . D 4 HOH A 187 587 600 HOH HOH . D 4 HOH A 188 588 572 HOH HOH . D 4 HOH A 189 589 552 HOH HOH . D 4 HOH A 190 590 584 HOH HOH . D 4 HOH A 191 591 440 HOH HOH . D 4 HOH A 192 592 595 HOH HOH . D 4 HOH A 193 593 598 HOH HOH . D 4 HOH A 194 594 582 HOH HOH . D 4 HOH A 195 595 487 HOH HOH . D 4 HOH A 196 596 587 HOH HOH . D 4 HOH A 197 597 603 HOH HOH . D 4 HOH A 198 598 591 HOH HOH . D 4 HOH A 199 599 592 HOH HOH . D 4 HOH A 200 600 589 HOH HOH . D 4 HOH A 201 601 585 HOH HOH . D 4 HOH A 202 602 604 HOH HOH . D 4 HOH A 203 603 601 HOH HOH . D 4 HOH A 204 604 602 HOH HOH . D 4 HOH A 205 605 612 HOH HOH . D 4 HOH A 206 606 609 HOH HOH . D 4 HOH A 207 607 605 HOH HOH . D 4 HOH A 208 608 627 HOH HOH . D 4 HOH A 209 609 608 HOH HOH . D 4 HOH A 210 610 607 HOH HOH . D 4 HOH A 211 611 606 HOH HOH . D 4 HOH A 212 612 614 HOH HOH . D 4 HOH A 213 613 610 HOH HOH . D 4 HOH A 214 614 615 HOH HOH . D 4 HOH A 215 615 611 HOH HOH . D 4 HOH A 216 616 617 HOH HOH . D 4 HOH A 217 617 625 HOH HOH . D 4 HOH A 218 618 618 HOH HOH . D 4 HOH A 219 619 619 HOH HOH . D 4 HOH A 220 620 621 HOH HOH . D 4 HOH A 221 621 622 HOH HOH . D 4 HOH A 222 622 620 HOH HOH . D 4 HOH A 223 623 623 HOH HOH . D 4 HOH A 224 624 616 HOH HOH . D 4 HOH A 225 625 613 HOH HOH . D 4 HOH A 226 626 624 HOH HOH . D 4 HOH A 227 627 628 HOH HOH . D 4 HOH A 228 628 626 HOH HOH . D 4 HOH A 229 629 629 HOH HOH . D 4 HOH A 230 630 631 HOH HOH . D 4 HOH A 231 631 630 HOH HOH . D 4 HOH A 232 632 633 HOH HOH . D 4 HOH A 233 633 634 HOH HOH . D 4 HOH A 234 634 632 HOH HOH . D 4 HOH A 235 635 635 HOH HOH . D 4 HOH A 236 636 636 HOH HOH . D 4 HOH A 237 637 637 HOH HOH . D 4 HOH A 238 638 638 HOH HOH . D 4 HOH A 239 639 639 HOH HOH . D 4 HOH A 240 640 640 HOH HOH . D 4 HOH A 241 641 642 HOH HOH . D 4 HOH A 242 642 641 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNP . . . C 3 19.201 5.744 12.37 1 26.59 ? C1 MNP 302 A 1 HETATM 2 C C2 MNP . . . C 3 19.09 6.449 13.706 1 20.8 ? C2 MNP 302 A 1 HETATM 3 C C1' MNP . . . C 3 17.68 6.295 14.13 1 14.45 ? C1' MNP 302 A 1 HETATM 4 C C2' MNP . . . C 3 17.264 5.307 15.003 1 15.13 ? C2' MNP 302 A 1 HETATM 5 C C3' MNP . . . C 3 15.917 5.143 15.403 1 16.8 ? C3' MNP 302 A 1 HETATM 6 N N3' MNP . . . C 3 15.602 4.139 16.367 1 16.84 ? N3' MNP 302 A 1 HETATM 7 O O3' MNP . . . C 3 14.355 3.83 16.538 1 20.3 ? O3' MNP 302 A 1 HETATM 8 O O4' MNP . . . C 3 16.434 3.488 16.983 1 20.98 ? O4' MNP 302 A 1 HETATM 9 C C4' MNP . . . C 3 14.967 5.976 14.863 1 15.97 ? C4' MNP 302 A 1 HETATM 10 C C5' MNP . . . C 3 15.389 6.996 14.015 1 13.89 ? C5' MNP 302 A 1 HETATM 11 C C6' MNP . . . C 3 16.646 7.108 13.649 1 16.33 ? C6' MNP 302 A 1 HETATM 12 O O1 MNP . . . C 3 18.911 6.315 11.249 1 30.15 ? O1 MNP 302 A 1 HETATM 13 O O2 MNP . . . C 3 19.523 4.548 12.412 1 25.2 ? O2 MNP 302 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #