data_9L30 # _model_server_result.job_id xJCvbamG3CUDMC4ojg9kpw _model_server_result.datetime_utc '2025-07-17 18:47:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9L30 # _exptl.entry_id 9L30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-NITROPHENYL)ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.27 _cell.angle_gamma 90 _cell.entry_id 9L30 _cell.length_a 41.911 _cell.length_b 41.155 _cell.length_c 72.232 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 D O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? # _chem_comp.formula 'C8 H7 N O4' _chem_comp.formula_weight 181.145 _chem_comp.id MNP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-NITROPHENYL)ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MNP sing 237 n n C1 O1 MNP doub 238 n n C1 O2 MNP sing 239 n n C2 C1' MNP sing 240 n n C2 H21 MNP sing 241 n n C2 H22 MNP sing 242 n n C1' C2' MNP doub 243 n y C1' C6' MNP sing 244 n y C2' C3' MNP sing 245 n y C2' H2' MNP sing 246 n n C3' N3' MNP sing 247 n n C3' C4' MNP doub 248 n y N3' O3' MNP sing 249 n n N3' O4' MNP doub 250 n n C4' C5' MNP sing 251 n y C4' H4' MNP sing 252 n n C5' C6' MNP doub 253 n y C5' H5' MNP sing 254 n n C6' H6' MNP sing 255 n n O2 HO2 MNP sing 256 n n # _atom_sites.entry_id 9L30 _atom_sites.fract_transf_matrix[1][1] 0.02386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00607 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 MNP A 1 302 302 MNP MNP . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 404 HOH HOH . D 4 HOH A 3 403 434 HOH HOH . D 4 HOH A 4 404 576 HOH HOH . D 4 HOH A 5 405 410 HOH HOH . D 4 HOH A 6 406 432 HOH HOH . D 4 HOH A 7 407 408 HOH HOH . D 4 HOH A 8 408 559 HOH HOH . D 4 HOH A 9 409 406 HOH HOH . D 4 HOH A 10 410 570 HOH HOH . D 4 HOH A 11 411 503 HOH HOH . D 4 HOH A 12 412 403 HOH HOH . D 4 HOH A 13 413 563 HOH HOH . D 4 HOH A 14 414 412 HOH HOH . D 4 HOH A 15 415 415 HOH HOH . D 4 HOH A 16 416 455 HOH HOH . D 4 HOH A 17 417 452 HOH HOH . D 4 HOH A 18 418 417 HOH HOH . D 4 HOH A 19 419 413 HOH HOH . D 4 HOH A 20 420 411 HOH HOH . D 4 HOH A 21 421 414 HOH HOH . D 4 HOH A 22 422 419 HOH HOH . D 4 HOH A 23 423 424 HOH HOH . D 4 HOH A 24 424 430 HOH HOH . D 4 HOH A 25 425 481 HOH HOH . D 4 HOH A 26 426 493 HOH HOH . D 4 HOH A 27 427 442 HOH HOH . D 4 HOH A 28 428 428 HOH HOH . D 4 HOH A 29 429 407 HOH HOH . D 4 HOH A 30 430 421 HOH HOH . D 4 HOH A 31 431 555 HOH HOH . D 4 HOH A 32 432 496 HOH HOH . D 4 HOH A 33 433 459 HOH HOH . D 4 HOH A 34 434 439 HOH HOH . D 4 HOH A 35 435 444 HOH HOH . D 4 HOH A 36 436 402 HOH HOH . D 4 HOH A 37 437 431 HOH HOH . D 4 HOH A 38 438 416 HOH HOH . D 4 HOH A 39 439 448 HOH HOH . D 4 HOH A 40 440 425 HOH HOH . D 4 HOH A 41 441 423 HOH HOH . D 4 HOH A 42 442 484 HOH HOH . D 4 HOH A 43 443 518 HOH HOH . D 4 HOH A 44 444 451 HOH HOH . D 4 HOH A 45 445 456 HOH HOH . D 4 HOH A 46 446 472 HOH HOH . D 4 HOH A 47 447 473 HOH HOH . D 4 HOH A 48 448 420 HOH HOH . D 4 HOH A 49 449 458 HOH HOH . D 4 HOH A 50 450 435 HOH HOH . D 4 HOH A 51 451 447 HOH HOH . D 4 HOH A 52 452 460 HOH HOH . D 4 HOH A 53 453 443 HOH HOH . D 4 HOH A 54 454 409 HOH HOH . D 4 HOH A 55 455 453 HOH HOH . D 4 HOH A 56 456 454 HOH HOH . D 4 HOH A 57 457 464 HOH HOH . D 4 HOH A 58 458 463 HOH HOH . D 4 HOH A 59 459 445 HOH HOH . D 4 HOH A 60 460 427 HOH HOH . D 4 HOH A 61 461 436 HOH HOH . D 4 HOH A 62 462 467 HOH HOH . D 4 HOH A 63 463 468 HOH HOH . D 4 HOH A 64 464 482 HOH HOH . D 4 HOH A 65 465 446 HOH HOH . D 4 HOH A 66 466 462 HOH HOH . D 4 HOH A 67 467 437 HOH HOH . D 4 HOH A 68 468 429 HOH HOH . D 4 HOH A 69 469 422 HOH HOH . D 4 HOH A 70 470 479 HOH HOH . D 4 HOH A 71 471 502 HOH HOH . D 4 HOH A 72 472 471 HOH HOH . D 4 HOH A 73 473 450 HOH HOH . D 4 HOH A 74 474 515 HOH HOH . D 4 HOH A 75 475 507 HOH HOH . D 4 HOH A 76 476 470 HOH HOH . D 4 HOH A 77 477 489 HOH HOH . D 4 HOH A 78 478 461 HOH HOH . D 4 HOH A 79 479 553 HOH HOH . D 4 HOH A 80 480 438 HOH HOH . D 4 HOH A 81 481 474 HOH HOH . D 4 HOH A 82 482 494 HOH HOH . D 4 HOH A 83 483 476 HOH HOH . D 4 HOH A 84 484 497 HOH HOH . D 4 HOH A 85 485 491 HOH HOH . D 4 HOH A 86 486 488 HOH HOH . D 4 HOH A 87 487 449 HOH HOH . D 4 HOH A 88 488 511 HOH HOH . D 4 HOH A 89 489 405 HOH HOH . D 4 HOH A 90 490 517 HOH HOH . D 4 HOH A 91 491 549 HOH HOH . D 4 HOH A 92 492 486 HOH HOH . D 4 HOH A 93 493 426 HOH HOH . D 4 HOH A 94 494 504 HOH HOH . D 4 HOH A 95 495 469 HOH HOH . D 4 HOH A 96 496 478 HOH HOH . D 4 HOH A 97 497 498 HOH HOH . D 4 HOH A 98 498 495 HOH HOH . D 4 HOH A 99 499 542 HOH HOH . D 4 HOH A 100 500 508 HOH HOH . D 4 HOH A 101 501 509 HOH HOH . D 4 HOH A 102 502 475 HOH HOH . D 4 HOH A 103 503 501 HOH HOH . D 4 HOH A 104 504 418 HOH HOH . D 4 HOH A 105 505 520 HOH HOH . D 4 HOH A 106 506 516 HOH HOH . D 4 HOH A 107 507 521 HOH HOH . D 4 HOH A 108 508 457 HOH HOH . D 4 HOH A 109 509 505 HOH HOH . D 4 HOH A 110 510 492 HOH HOH . D 4 HOH A 111 511 547 HOH HOH . D 4 HOH A 112 512 465 HOH HOH . D 4 HOH A 113 513 528 HOH HOH . D 4 HOH A 114 514 499 HOH HOH . D 4 HOH A 115 515 527 HOH HOH . D 4 HOH A 116 516 510 HOH HOH . D 4 HOH A 117 517 514 HOH HOH . D 4 HOH A 118 518 506 HOH HOH . D 4 HOH A 119 519 546 HOH HOH . D 4 HOH A 120 520 433 HOH HOH . D 4 HOH A 121 521 597 HOH HOH . D 4 HOH A 122 522 490 HOH HOH . D 4 HOH A 123 523 558 HOH HOH . D 4 HOH A 124 524 573 HOH HOH . D 4 HOH A 125 525 526 HOH HOH . D 4 HOH A 126 526 512 HOH HOH . D 4 HOH A 127 527 543 HOH HOH . D 4 HOH A 128 528 513 HOH HOH . D 4 HOH A 129 529 524 HOH HOH . D 4 HOH A 130 530 586 HOH HOH . D 4 HOH A 131 531 536 HOH HOH . D 4 HOH A 132 532 551 HOH HOH . D 4 HOH A 133 533 533 HOH HOH . D 4 HOH A 134 534 557 HOH HOH . D 4 HOH A 135 535 522 HOH HOH . D 4 HOH A 136 536 538 HOH HOH . D 4 HOH A 137 537 539 HOH HOH . D 4 HOH A 138 538 531 HOH HOH . D 4 HOH A 139 539 535 HOH HOH . D 4 HOH A 140 540 480 HOH HOH . D 4 HOH A 141 541 574 HOH HOH . D 4 HOH A 142 542 529 HOH HOH . D 4 HOH A 143 543 554 HOH HOH . D 4 HOH A 144 544 550 HOH HOH . D 4 HOH A 145 545 537 HOH HOH . D 4 HOH A 146 546 571 HOH HOH . D 4 HOH A 147 547 500 HOH HOH . D 4 HOH A 148 548 525 HOH HOH . D 4 HOH A 149 549 548 HOH HOH . D 4 HOH A 150 550 540 HOH HOH . D 4 HOH A 151 551 534 HOH HOH . D 4 HOH A 152 552 441 HOH HOH . D 4 HOH A 153 553 545 HOH HOH . D 4 HOH A 154 554 565 HOH HOH . D 4 HOH A 155 555 519 HOH HOH . D 4 HOH A 156 556 541 HOH HOH . D 4 HOH A 157 557 556 HOH HOH . D 4 HOH A 158 558 564 HOH HOH . D 4 HOH A 159 559 566 HOH HOH . D 4 HOH A 160 560 583 HOH HOH . D 4 HOH A 161 561 477 HOH HOH . D 4 HOH A 162 562 544 HOH HOH . D 4 HOH A 163 563 562 HOH HOH . D 4 HOH A 164 564 561 HOH HOH . D 4 HOH A 165 565 580 HOH HOH . D 4 HOH A 166 566 578 HOH HOH . D 4 HOH A 167 567 560 HOH HOH . D 4 HOH A 168 568 575 HOH HOH . D 4 HOH A 169 569 485 HOH HOH . D 4 HOH A 170 570 466 HOH HOH . D 4 HOH A 171 571 594 HOH HOH . D 4 HOH A 172 572 530 HOH HOH . D 4 HOH A 173 573 483 HOH HOH . D 4 HOH A 174 574 581 HOH HOH . D 4 HOH A 175 575 596 HOH HOH . D 4 HOH A 176 576 568 HOH HOH . D 4 HOH A 177 577 599 HOH HOH . D 4 HOH A 178 578 577 HOH HOH . D 4 HOH A 179 579 569 HOH HOH . D 4 HOH A 180 580 532 HOH HOH . D 4 HOH A 181 581 579 HOH HOH . D 4 HOH A 182 582 584 HOH HOH . D 4 HOH A 183 583 567 HOH HOH . D 4 HOH A 184 584 590 HOH HOH . D 4 HOH A 185 585 572 HOH HOH . D 4 HOH A 186 586 593 HOH HOH . D 4 HOH A 187 587 582 HOH HOH . D 4 HOH A 188 588 595 HOH HOH . D 4 HOH A 189 589 600 HOH HOH . D 4 HOH A 190 590 487 HOH HOH . D 4 HOH A 191 591 440 HOH HOH . D 4 HOH A 192 592 603 HOH HOH . D 4 HOH A 193 593 588 HOH HOH . D 4 HOH A 194 594 552 HOH HOH . D 4 HOH A 195 595 587 HOH HOH . D 4 HOH A 196 596 585 HOH HOH . D 4 HOH A 197 597 592 HOH HOH . D 4 HOH A 198 598 591 HOH HOH . D 4 HOH A 199 599 589 HOH HOH . D 4 HOH A 200 600 523 HOH HOH . D 4 HOH A 201 601 604 HOH HOH . D 4 HOH A 202 602 598 HOH HOH . D 4 HOH A 203 603 612 HOH HOH . D 4 HOH A 204 604 602 HOH HOH . D 4 HOH A 205 605 601 HOH HOH . D 4 HOH A 206 606 609 HOH HOH . D 4 HOH A 207 607 605 HOH HOH . D 4 HOH A 208 608 627 HOH HOH . D 4 HOH A 209 609 608 HOH HOH . D 4 HOH A 210 610 606 HOH HOH . D 4 HOH A 211 611 607 HOH HOH . D 4 HOH A 212 612 614 HOH HOH . D 4 HOH A 213 613 610 HOH HOH . D 4 HOH A 214 614 615 HOH HOH . D 4 HOH A 215 615 611 HOH HOH . D 4 HOH A 216 616 625 HOH HOH . D 4 HOH A 217 617 618 HOH HOH . D 4 HOH A 218 618 617 HOH HOH . D 4 HOH A 219 619 623 HOH HOH . D 4 HOH A 220 620 619 HOH HOH . D 4 HOH A 221 621 621 HOH HOH . D 4 HOH A 222 622 622 HOH HOH . D 4 HOH A 223 623 620 HOH HOH . D 4 HOH A 224 624 613 HOH HOH . D 4 HOH A 225 625 616 HOH HOH . D 4 HOH A 226 626 624 HOH HOH . D 4 HOH A 227 627 628 HOH HOH . D 4 HOH A 228 628 631 HOH HOH . D 4 HOH A 229 629 629 HOH HOH . D 4 HOH A 230 630 630 HOH HOH . D 4 HOH A 231 631 626 HOH HOH . D 4 HOH A 232 632 633 HOH HOH . D 4 HOH A 233 633 632 HOH HOH . D 4 HOH A 234 634 634 HOH HOH . D 4 HOH A 235 635 635 HOH HOH . D 4 HOH A 236 636 636 HOH HOH . D 4 HOH A 237 637 637 HOH HOH . D 4 HOH A 238 638 638 HOH HOH . D 4 HOH A 239 639 639 HOH HOH . D 4 HOH A 240 640 640 HOH HOH . D 4 HOH A 241 641 642 HOH HOH . D 4 HOH A 242 642 641 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNP . . . C 3 19.257 5.737 12.41 1 28.13 ? C1 MNP 302 A 1 HETATM 2 C C2 MNP . . . C 3 19.147 6.405 13.772 1 21.07 ? C2 MNP 302 A 1 HETATM 3 C C1' MNP . . . C 3 17.699 6.315 14.157 1 14.91 ? C1' MNP 302 A 1 HETATM 4 C C2' MNP . . . C 3 17.264 5.331 15.029 1 16.35 ? C2' MNP 302 A 1 HETATM 5 C C3' MNP . . . C 3 15.919 5.147 15.408 1 19.1 ? C3' MNP 302 A 1 HETATM 6 N N3' MNP . . . C 3 15.592 4.187 16.39 1 17.8 ? N3' MNP 302 A 1 HETATM 7 O O3' MNP . . . C 3 14.338 3.867 16.541 1 21.3 ? O3' MNP 302 A 1 HETATM 8 O O4' MNP . . . C 3 16.411 3.516 17.026 1 21.56 ? O4' MNP 302 A 1 HETATM 9 C C4' MNP . . . C 3 15.001 6.011 14.859 1 16.78 ? C4' MNP 302 A 1 HETATM 10 C C5' MNP . . . C 3 15.4 7.035 14.009 1 14.82 ? C5' MNP 302 A 1 HETATM 11 C C6' MNP . . . C 3 16.672 7.14 13.645 1 17.75 ? C6' MNP 302 A 1 HETATM 12 O O1 MNP . . . C 3 19.005 6.339 11.296 1 32.61 ? O1 MNP 302 A 1 HETATM 13 O O2 MNP . . . C 3 19.542 4.545 12.428 1 26.72 ? O2 MNP 302 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #