data_9L3C # _model_server_result.job_id rptTU-SC8n3aFZOTPTal_g _model_server_result.datetime_utc '2025-06-21 00:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":405}' # _entry.id 9L3C # _exptl.entry_id 9L3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.291 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNDECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L3C _cell.length_a 127.473 _cell.length_b 127.473 _cell.length_c 252.519 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 W N N ? 11 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A NE2 HIS 98 A HIS 84 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A OD2 ASP 250 A ASP 236 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc5 A O GLY 297 A GLY 283 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 362 A ASP 348 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A OD1 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc8 A OD2 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 A OD2 ASP 370 A ASP 356 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 A OD2 ASP 373 A ASP 359 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 B OD1 ASP 78 B ASP 64 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 B OD2 ASP 250 B ASP 236 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc13 B O GLY 297 B GLY 283 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc14 B OD2 ASP 362 B ASP 348 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OD1 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc16 B OD2 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc17 B OD2 ASP 370 B ASP 356 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 B OD2 ASP 373 B ASP 359 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C11 H22 O2' _chem_comp.formula_weight 186.291 _chem_comp.id 11A _chem_comp.mon_nstd_flag . _chem_comp.name 'UNDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAD 11A sing 1 n n CAA HAA1 11A sing 2 n n CAA HAA2 11A sing 3 n n CAA HAA3 11A sing 4 n n CAD CAE 11A sing 5 n n CAD HAD1 11A sing 6 n n CAD HAD2 11A sing 7 n n CAE CAF 11A sing 8 n n CAE HAE1 11A sing 9 n n CAE HAE2 11A sing 10 n n CAF CAG 11A sing 11 n n CAF HAF1 11A sing 12 n n CAF HAF2 11A sing 13 n n CAG CAH 11A sing 14 n n CAG HAG1 11A sing 15 n n CAG HAG2 11A sing 16 n n CAH CAI 11A sing 17 n n CAH HAH1 11A sing 18 n n CAH HAH2 11A sing 19 n n CAI CAJ 11A sing 20 n n CAI HAI1 11A sing 21 n n CAI HAI2 11A sing 22 n n CAJ CAK 11A sing 23 n n CAJ HAJ1 11A sing 24 n n CAJ HAJ2 11A sing 25 n n CAK CAL 11A sing 26 n n CAK HAK1 11A sing 27 n n CAK HAK2 11A sing 28 n n CAL CAM 11A sing 29 n n CAL HAL1 11A sing 30 n n CAL HAL2 11A sing 31 n n CAM OAC 11A sing 32 n n CAM OAB 11A doub 33 n n OAC HAC 11A sing 34 n n # _atom_sites.entry_id 9L3C _atom_sites.fract_transf_matrix[1][1] 0.007845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 407 GOL GOL . D 3 OCA A 1 402 402 OCA OCA . E 4 PPI A 1 403 405 PPI PPI . F 4 PPI A 1 404 406 PPI PPI . G 4 PPI A 1 405 408 PPI PPI . H 5 A1L60 A 1 406 409 A1L60 LIG . I 6 FMT A 1 407 410 FMT FMT . J 6 FMT A 1 408 411 FMT FMT . K 7 BUA A 1 409 412 BUA BUA . L 3 OCA A 1 410 404 OCA OCA . M 8 ZN A 1 411 1 ZN ZN . N 9 CA A 1 412 1 CA CA . O 3 OCA A 1 413 1 OCA OCA . P 10 CL A 1 414 1 CL CL . Q 10 CL A 1 415 3 CL CL . R 10 CL A 1 416 4 CL CL . S 4 PPI A 1 417 2 PPI PPI . T 7 BUA B 1 401 403 BUA BUA . U 2 GOL B 1 402 406 GOL GOL . V 7 BUA B 1 403 407 BUA BUA . W 11 11A B 1 404 408 11A 11A . X 11 11A B 1 405 409 11A 11A . Y 5 A1L60 B 1 406 410 A1L60 LIG . Z 6 FMT B 1 407 411 FMT FMT . AA 6 FMT B 1 408 412 FMT FMT . BA 12 SHV B 1 409 413 SHV SHV . CA 8 ZN B 1 410 2 ZN ZN . DA 9 CA B 1 411 2 CA CA . EA 13 6NA B 1 412 2 6NA 6NA . FA 13 6NA B 1 413 3 6NA 6NA . GA 10 CL B 1 414 2 CL CL . HA 7 BUA B 1 415 1 BUA BUA . IA 4 PPI B 1 416 1 PPI PPI . JA 14 HOH A 1 501 10 HOH HOH . JA 14 HOH A 2 502 37 HOH HOH . JA 14 HOH A 3 503 20 HOH HOH . JA 14 HOH A 4 504 19 HOH HOH . JA 14 HOH A 5 505 23 HOH HOH . JA 14 HOH A 6 506 21 HOH HOH . JA 14 HOH A 7 507 16 HOH HOH . JA 14 HOH A 8 508 38 HOH HOH . JA 14 HOH A 9 509 8 HOH HOH . JA 14 HOH A 10 510 45 HOH HOH . JA 14 HOH A 11 511 15 HOH HOH . JA 14 HOH A 12 512 7 HOH HOH . JA 14 HOH A 13 513 1 HOH HOH . JA 14 HOH A 14 514 22 HOH HOH . JA 14 HOH A 15 515 11 HOH HOH . JA 14 HOH A 16 516 12 HOH HOH . JA 14 HOH A 17 517 4 HOH HOH . JA 14 HOH A 18 518 5 HOH HOH . JA 14 HOH A 19 519 40 HOH HOH . JA 14 HOH A 20 520 3 HOH HOH . JA 14 HOH A 21 521 18 HOH HOH . JA 14 HOH A 22 522 39 HOH HOH . JA 14 HOH A 23 523 14 HOH HOH . JA 14 HOH A 24 524 17 HOH HOH . JA 14 HOH A 25 525 33 HOH HOH . JA 14 HOH A 26 526 36 HOH HOH . JA 14 HOH A 27 527 32 HOH HOH . JA 14 HOH A 28 528 35 HOH HOH . JA 14 HOH A 29 529 46 HOH HOH . JA 14 HOH A 30 530 25 HOH HOH . KA 14 HOH B 1 501 28 HOH HOH . KA 14 HOH B 2 502 41 HOH HOH . KA 14 HOH B 3 503 6 HOH HOH . KA 14 HOH B 4 504 26 HOH HOH . KA 14 HOH B 5 505 9 HOH HOH . KA 14 HOH B 6 506 2 HOH HOH . KA 14 HOH B 7 507 43 HOH HOH . KA 14 HOH B 8 508 44 HOH HOH . KA 14 HOH B 9 509 13 HOH HOH . KA 14 HOH B 10 510 27 HOH HOH . KA 14 HOH B 11 511 42 HOH HOH . KA 14 HOH B 12 512 34 HOH HOH . KA 14 HOH B 13 513 31 HOH HOH . KA 14 HOH B 14 514 24 HOH HOH . KA 14 HOH B 15 515 30 HOH HOH . KA 14 HOH B 16 516 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 11A . . . X 11 42.033 36.751 -48.656 1 95.12 ? CAA 11A 405 B 1 HETATM 2 C CAD 11A . . . X 11 40.75 37.065 -47.865 1 107.05 ? CAD 11A 405 B 1 HETATM 3 C CAE 11A . . . X 11 40.302 36.054 -46.811 1 112.3 ? CAE 11A 405 B 1 HETATM 4 C CAF 11A . . . X 11 41.17 36.002 -45.529 1 120.23 ? CAF 11A 405 B 1 HETATM 5 C CAG 11A . . . X 11 40.826 34.912 -44.507 1 105.2 ? CAG 11A 405 B 1 HETATM 6 C CAH 11A . . . X 11 39.942 35.364 -43.384 1 102.91 ? CAH 11A 405 B 1 HETATM 7 C CAI 11A . . . X 11 40.206 36.777 -42.903 1 111.15 ? CAI 11A 405 B 1 HETATM 8 C CAJ 11A . . . X 11 39.018 37.452 -42.246 1 118.38 ? CAJ 11A 405 B 1 HETATM 9 C CAK 11A . . . X 11 38.623 38.832 -42.796 1 118.73 ? CAK 11A 405 B 1 HETATM 10 C CAL 11A . . . X 11 38.958 39.978 -41.855 1 109.39 ? CAL 11A 405 B 1 HETATM 11 C CAM 11A . . . X 11 38.071 41.213 -41.866 1 99.22 ? CAM 11A 405 B 1 HETATM 12 O OAC 11A . . . X 11 37.411 41.474 -42.93 1 92.97 ? OAC 11A 405 B 1 HETATM 13 O OAB 11A . . . X 11 38.043 41.918 -40.79 1 84.33 ? OAB 11A 405 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #