data_9L3C # _model_server_result.job_id r9-j68CuylNRGQEaTcoBFw _model_server_result.datetime_utc '2025-08-05 23:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":406}' # _entry.id 9L3C # _exptl.entry_id 9L3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.965 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperidin-4-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L3C _cell.length_a 127.473 _cell.length_b 127.473 _cell.length_c 252.519 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A NE2 HIS 98 A HIS 84 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A OD2 ASP 250 A ASP 236 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc5 A O GLY 297 A GLY 283 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 362 A ASP 348 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A OD1 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc8 A OD2 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 A OD2 ASP 370 A ASP 356 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 A OD2 ASP 373 A ASP 359 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 B OD1 ASP 78 B ASP 64 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 B OD2 ASP 250 B ASP 236 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc13 B O GLY 297 B GLY 283 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc14 B OD2 ASP 362 B ASP 348 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OD1 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc16 B OD2 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc17 B OD2 ASP 370 B ASP 356 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 B OD2 ASP 373 B ASP 359 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C28 H27 Cl F5 N O' _chem_comp.formula_weight 523.965 _chem_comp.id A1L60 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Penfluridol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C20 A1L60 doub 54 n y C24 C28 A1L60 sing 55 n y F4 C27 A1L60 sing 56 n n F5 C28 A1L60 sing 57 n n C20 C15 A1L60 sing 58 n y C23 C27 A1L60 doub 59 n y C23 C19 A1L60 sing 60 n y C27 C25 A1L60 sing 61 n y C19 C14 A1L60 doub 62 n y C28 C26 A1L60 doub 63 n y C25 C21 A1L60 doub 64 n y C14 C21 A1L60 sing 65 n y C14 C10 A1L60 sing 66 n n C15 C10 A1L60 sing 67 n n C15 C22 A1L60 doub 68 n y C10 C9 A1L60 sing 69 n n C26 C22 A1L60 sing 70 n y C8 C9 A1L60 sing 71 n n C8 C6 A1L60 sing 72 n n C6 N1 A1L60 sing 73 n n C4 N1 A1L60 sing 74 n n C4 C2 A1L60 sing 75 n n N1 C5 A1L60 sing 76 n n C2 C1 A1L60 sing 77 n n C5 C3 A1L60 sing 78 n n O1 C1 A1L60 sing 79 n n C1 C3 A1L60 sing 80 n n C1 C7 A1L60 sing 81 n n C7 C11 A1L60 doub 82 n y C7 C12 A1L60 sing 83 n y F3 C18 A1L60 sing 84 n n C11 C13 A1L60 sing 85 n y C12 C16 A1L60 doub 86 n y C13 C18 A1L60 sing 87 n n C13 C17 A1L60 doub 88 n y C18 F2 A1L60 sing 89 n n C18 F1 A1L60 sing 90 n n C16 C17 A1L60 sing 91 n y C17 CL1 A1L60 sing 92 n n C4 H2 A1L60 sing 93 n n C4 H3 A1L60 sing 94 n n C5 H4 A1L60 sing 95 n n C5 H5 A1L60 sing 96 n n C6 H6 A1L60 sing 97 n n C6 H7 A1L60 sing 98 n n C8 H8 A1L60 sing 99 n n C8 H9 A1L60 sing 100 n n C10 H10 A1L60 sing 101 n n C20 H11 A1L60 sing 102 n n C21 H12 A1L60 sing 103 n n C22 H13 A1L60 sing 104 n n C24 H14 A1L60 sing 105 n n C26 H15 A1L60 sing 106 n n O1 H16 A1L60 sing 107 n n C2 H17 A1L60 sing 108 n n C2 H18 A1L60 sing 109 n n C3 H19 A1L60 sing 110 n n C3 H20 A1L60 sing 111 n n C9 H21 A1L60 sing 112 n n C9 H22 A1L60 sing 113 n n C11 H23 A1L60 sing 114 n n C12 H24 A1L60 sing 115 n n C16 H25 A1L60 sing 116 n n C19 H26 A1L60 sing 117 n n C23 H27 A1L60 sing 118 n n C25 H28 A1L60 sing 119 n n # _atom_sites.entry_id 9L3C _atom_sites.fract_transf_matrix[1][1] 0.007845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 407 GOL GOL . D 3 OCA A 1 402 402 OCA OCA . E 4 PPI A 1 403 405 PPI PPI . F 4 PPI A 1 404 406 PPI PPI . G 4 PPI A 1 405 408 PPI PPI . H 5 A1L60 A 1 406 409 A1L60 LIG . I 6 FMT A 1 407 410 FMT FMT . J 6 FMT A 1 408 411 FMT FMT . K 7 BUA A 1 409 412 BUA BUA . L 3 OCA A 1 410 404 OCA OCA . M 8 ZN A 1 411 1 ZN ZN . N 9 CA A 1 412 1 CA CA . O 3 OCA A 1 413 1 OCA OCA . P 10 CL A 1 414 1 CL CL . Q 10 CL A 1 415 3 CL CL . R 10 CL A 1 416 4 CL CL . S 4 PPI A 1 417 2 PPI PPI . T 7 BUA B 1 401 403 BUA BUA . U 2 GOL B 1 402 406 GOL GOL . V 7 BUA B 1 403 407 BUA BUA . W 11 11A B 1 404 408 11A 11A . X 11 11A B 1 405 409 11A 11A . Y 5 A1L60 B 1 406 410 A1L60 LIG . Z 6 FMT B 1 407 411 FMT FMT . AA 6 FMT B 1 408 412 FMT FMT . BA 12 SHV B 1 409 413 SHV SHV . CA 8 ZN B 1 410 2 ZN ZN . DA 9 CA B 1 411 2 CA CA . EA 13 6NA B 1 412 2 6NA 6NA . FA 13 6NA B 1 413 3 6NA 6NA . GA 10 CL B 1 414 2 CL CL . HA 7 BUA B 1 415 1 BUA BUA . IA 4 PPI B 1 416 1 PPI PPI . JA 14 HOH A 1 501 10 HOH HOH . JA 14 HOH A 2 502 37 HOH HOH . JA 14 HOH A 3 503 20 HOH HOH . JA 14 HOH A 4 504 19 HOH HOH . JA 14 HOH A 5 505 23 HOH HOH . JA 14 HOH A 6 506 21 HOH HOH . JA 14 HOH A 7 507 16 HOH HOH . JA 14 HOH A 8 508 38 HOH HOH . JA 14 HOH A 9 509 8 HOH HOH . JA 14 HOH A 10 510 45 HOH HOH . JA 14 HOH A 11 511 15 HOH HOH . JA 14 HOH A 12 512 7 HOH HOH . JA 14 HOH A 13 513 1 HOH HOH . JA 14 HOH A 14 514 22 HOH HOH . JA 14 HOH A 15 515 11 HOH HOH . JA 14 HOH A 16 516 12 HOH HOH . JA 14 HOH A 17 517 4 HOH HOH . JA 14 HOH A 18 518 5 HOH HOH . JA 14 HOH A 19 519 40 HOH HOH . JA 14 HOH A 20 520 3 HOH HOH . JA 14 HOH A 21 521 18 HOH HOH . JA 14 HOH A 22 522 39 HOH HOH . JA 14 HOH A 23 523 14 HOH HOH . JA 14 HOH A 24 524 17 HOH HOH . JA 14 HOH A 25 525 33 HOH HOH . JA 14 HOH A 26 526 36 HOH HOH . JA 14 HOH A 27 527 32 HOH HOH . JA 14 HOH A 28 528 35 HOH HOH . JA 14 HOH A 29 529 46 HOH HOH . JA 14 HOH A 30 530 25 HOH HOH . KA 14 HOH B 1 501 28 HOH HOH . KA 14 HOH B 2 502 41 HOH HOH . KA 14 HOH B 3 503 6 HOH HOH . KA 14 HOH B 4 504 26 HOH HOH . KA 14 HOH B 5 505 9 HOH HOH . KA 14 HOH B 6 506 2 HOH HOH . KA 14 HOH B 7 507 43 HOH HOH . KA 14 HOH B 8 508 44 HOH HOH . KA 14 HOH B 9 509 13 HOH HOH . KA 14 HOH B 10 510 27 HOH HOH . KA 14 HOH B 11 511 42 HOH HOH . KA 14 HOH B 12 512 34 HOH HOH . KA 14 HOH B 13 513 31 HOH HOH . KA 14 HOH B 14 514 24 HOH HOH . KA 14 HOH B 15 515 30 HOH HOH . KA 14 HOH B 16 516 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1L60 . . . Y 5 51.399 29.755 -22.238 1 109.31 ? N1 A1L60 406 B 1 HETATM 2 C C4 A1L60 . . . Y 5 52.3 30.702 -22.926 1 106.58 ? C4 A1L60 406 B 1 HETATM 3 C C5 A1L60 . . . Y 5 51.943 29.454 -20.896 1 97.74 ? C5 A1L60 406 B 1 HETATM 4 C C6 A1L60 . . . Y 5 49.992 30.182 -22.207 1 128.12 ? C6 A1L60 406 B 1 HETATM 5 C C7 A1L60 . . . Y 5 55.047 28.038 -22.689 1 93.64 ? C7 A1L60 406 B 1 HETATM 6 C C8 A1L60 . . . Y 5 49.737 31.618 -22.645 1 131.82 ? C8 A1L60 406 B 1 HETATM 7 C C10 A1L60 . . . Y 5 48.64 33.698 -21.835 1 113.23 ? C10 A1L60 406 B 1 HETATM 8 C C13 A1L60 . . . Y 5 56.489 26.293 -23.574 1 100.68 ? C13 A1L60 406 B 1 HETATM 9 C C15 A1L60 . . . Y 5 49.477 34.973 -21.798 1 92.36 ? C15 A1L60 406 B 1 HETATM 10 C C17 A1L60 . . . Y 5 57.563 26.944 -22.906 1 95.51 ? C17 A1L60 406 B 1 HETATM 11 C C20 A1L60 . . . Y 5 48.931 36.041 -22.492 1 84.31 ? C20 A1L60 406 B 1 HETATM 12 C C21 A1L60 . . . Y 5 46.131 33.563 -21.871 1 126.15 ? C21 A1L60 406 B 1 HETATM 13 C C22 A1L60 . . . Y 5 50.739 35.134 -21.242 1 85.71 ? C22 A1L60 406 B 1 HETATM 14 C C24 A1L60 . . . Y 5 49.588 37.253 -22.59 1 100.06 ? C24 A1L60 406 B 1 HETATM 15 C C26 A1L60 . . . Y 5 51.408 36.344 -21.346 1 90.44 ? C26 A1L60 406 B 1 HETATM 16 C C28 A1L60 . . . Y 5 50.804 37.368 -22.023 1 99.64 ? C28 A1L60 406 B 1 HETATM 17 CL CL1 A1L60 . . . Y 5 59.185 26.372 -22.88 1 144.63 ? CL1 A1L60 406 B 1 HETATM 18 F F1 A1L60 . . . Y 5 57.5 25.065 -25.378 1 137.99 ? F1 A1L60 406 B 1 HETATM 19 F F2 A1L60 . . . Y 5 56.879 23.932 -23.711 1 147.85 ? F2 A1L60 406 B 1 HETATM 20 F F3 A1L60 . . . Y 5 55.506 24.714 -25.15 1 128.61 ? F3 A1L60 406 B 1 HETATM 21 F F4 A1L60 . . . Y 5 43.538 34.478 -19.539 1 143.43 ? F4 A1L60 406 B 1 HETATM 22 F F5 A1L60 . . . Y 5 51.44 38.566 -22.157 1 132.73 ? F5 A1L60 406 B 1 HETATM 23 O O1 A1L60 . . . Y 5 52.679 27.714 -23.069 1 87.89 ? O1 A1L60 406 B 1 HETATM 24 C C1 A1L60 . . . Y 5 53.652 28.631 -22.543 1 96.04 ? C1 A1L60 406 B 1 HETATM 25 C C2 A1L60 . . . Y 5 53.608 30.004 -23.226 1 95.59 ? C2 A1L60 406 B 1 HETATM 26 C C3 A1L60 . . . Y 5 53.314 28.833 -21.056 1 92.86 ? C3 A1L60 406 B 1 HETATM 27 C C9 A1L60 . . . Y 5 49.449 32.462 -21.434 1 124.53 ? C9 A1L60 406 B 1 HETATM 28 C C11 A1L60 . . . Y 5 55.237 26.871 -23.419 1 86.52 ? C11 A1L60 406 B 1 HETATM 29 C C12 A1L60 . . . Y 5 56.131 28.644 -22.067 1 97.73 ? C12 A1L60 406 B 1 HETATM 30 C C14 A1L60 . . . Y 5 47.286 33.904 -21.159 1 121.23 ? C14 A1L60 406 B 1 HETATM 31 C C16 A1L60 . . . Y 5 57.389 28.094 -22.173 1 97.87 ? C16 A1L60 406 B 1 HETATM 32 C C18 A1L60 . . . Y 5 56.601 25.021 -24.41 1 125.41 ? C18 A1L60 406 B 1 HETATM 33 C C19 A1L60 . . . Y 5 47.144 34.464 -19.893 1 109.51 ? C19 A1L60 406 B 1 HETATM 34 C C23 A1L60 . . . Y 5 45.882 34.663 -19.344 1 117.57 ? C23 A1L60 406 B 1 HETATM 35 C C25 A1L60 . . . Y 5 44.865 33.769 -21.339 1 118.27 ? C25 A1L60 406 B 1 HETATM 36 C C27 A1L60 . . . Y 5 44.778 34.299 -20.081 1 122.38 ? C27 A1L60 406 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #