data_9L3C # _model_server_result.job_id 6yID9Tnf1eMUDCL8Oiy4Dg _model_server_result.datetime_utc '2025-06-21 00:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":413}' # _entry.id 9L3C # _exptl.entry_id 9L3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (CAPRYLIC ACID)' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L3C _cell.length_a 127.473 _cell.length_b 127.473 _cell.length_c 252.519 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD2 ASP 78 A ASP 64 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A NE2 HIS 98 A HIS 84 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A OD2 ASP 250 A ASP 236 1_555 M ZN ZN . A ZN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc5 A O GLY 297 A GLY 283 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A OD2 ASP 362 A ASP 348 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc7 A OD1 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc8 A OD2 ASP 365 A ASP 351 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 A OD2 ASP 370 A ASP 356 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 A OD2 ASP 373 A ASP 359 1_555 N CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 B OD1 ASP 78 B ASP 64 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc12 B OD2 ASP 250 B ASP 236 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc13 B O GLY 297 B GLY 283 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc14 B OD2 ASP 362 B ASP 348 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OD1 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc16 B OD2 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc17 B OD2 ASP 370 B ASP 356 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 B OD2 ASP 373 B ASP 359 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C8 H16 O2' _chem_comp.formula_weight 144.211 _chem_comp.id OCA _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (CAPRYLIC ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCA sing 373 n n C1 O1 OCA doub 374 n n C1 O2 OCA sing 375 n n C2 C3 OCA sing 376 n n C2 H21 OCA sing 377 n n C2 H22 OCA sing 378 n n C3 C4 OCA sing 379 n n C3 H31 OCA sing 380 n n C3 H32 OCA sing 381 n n C4 C5 OCA sing 382 n n C4 H41 OCA sing 383 n n C4 H42 OCA sing 384 n n C5 C6 OCA sing 385 n n C5 H51 OCA sing 386 n n C5 H52 OCA sing 387 n n C6 C7 OCA sing 388 n n C6 H61 OCA sing 389 n n C6 H62 OCA sing 390 n n C7 C8 OCA sing 391 n n C7 H71 OCA sing 392 n n C7 H72 OCA sing 393 n n C8 H81 OCA sing 394 n n C8 H82 OCA sing 395 n n C8 H83 OCA sing 396 n n O2 HO2 OCA sing 397 n n # _atom_sites.entry_id 9L3C _atom_sites.fract_transf_matrix[1][1] 0.007845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 407 GOL GOL . D 3 OCA A 1 402 402 OCA OCA . E 4 PPI A 1 403 405 PPI PPI . F 4 PPI A 1 404 406 PPI PPI . G 4 PPI A 1 405 408 PPI PPI . H 5 A1L60 A 1 406 409 A1L60 LIG . I 6 FMT A 1 407 410 FMT FMT . J 6 FMT A 1 408 411 FMT FMT . K 7 BUA A 1 409 412 BUA BUA . L 3 OCA A 1 410 404 OCA OCA . M 8 ZN A 1 411 1 ZN ZN . N 9 CA A 1 412 1 CA CA . O 3 OCA A 1 413 1 OCA OCA . P 10 CL A 1 414 1 CL CL . Q 10 CL A 1 415 3 CL CL . R 10 CL A 1 416 4 CL CL . S 4 PPI A 1 417 2 PPI PPI . T 7 BUA B 1 401 403 BUA BUA . U 2 GOL B 1 402 406 GOL GOL . V 7 BUA B 1 403 407 BUA BUA . W 11 11A B 1 404 408 11A 11A . X 11 11A B 1 405 409 11A 11A . Y 5 A1L60 B 1 406 410 A1L60 LIG . Z 6 FMT B 1 407 411 FMT FMT . AA 6 FMT B 1 408 412 FMT FMT . BA 12 SHV B 1 409 413 SHV SHV . CA 8 ZN B 1 410 2 ZN ZN . DA 9 CA B 1 411 2 CA CA . EA 13 6NA B 1 412 2 6NA 6NA . FA 13 6NA B 1 413 3 6NA 6NA . GA 10 CL B 1 414 2 CL CL . HA 7 BUA B 1 415 1 BUA BUA . IA 4 PPI B 1 416 1 PPI PPI . JA 14 HOH A 1 501 10 HOH HOH . JA 14 HOH A 2 502 37 HOH HOH . JA 14 HOH A 3 503 20 HOH HOH . JA 14 HOH A 4 504 19 HOH HOH . JA 14 HOH A 5 505 23 HOH HOH . JA 14 HOH A 6 506 21 HOH HOH . JA 14 HOH A 7 507 16 HOH HOH . JA 14 HOH A 8 508 38 HOH HOH . JA 14 HOH A 9 509 8 HOH HOH . JA 14 HOH A 10 510 45 HOH HOH . JA 14 HOH A 11 511 15 HOH HOH . JA 14 HOH A 12 512 7 HOH HOH . JA 14 HOH A 13 513 1 HOH HOH . JA 14 HOH A 14 514 22 HOH HOH . JA 14 HOH A 15 515 11 HOH HOH . JA 14 HOH A 16 516 12 HOH HOH . JA 14 HOH A 17 517 4 HOH HOH . JA 14 HOH A 18 518 5 HOH HOH . JA 14 HOH A 19 519 40 HOH HOH . JA 14 HOH A 20 520 3 HOH HOH . JA 14 HOH A 21 521 18 HOH HOH . JA 14 HOH A 22 522 39 HOH HOH . JA 14 HOH A 23 523 14 HOH HOH . JA 14 HOH A 24 524 17 HOH HOH . JA 14 HOH A 25 525 33 HOH HOH . JA 14 HOH A 26 526 36 HOH HOH . JA 14 HOH A 27 527 32 HOH HOH . JA 14 HOH A 28 528 35 HOH HOH . JA 14 HOH A 29 529 46 HOH HOH . JA 14 HOH A 30 530 25 HOH HOH . KA 14 HOH B 1 501 28 HOH HOH . KA 14 HOH B 2 502 41 HOH HOH . KA 14 HOH B 3 503 6 HOH HOH . KA 14 HOH B 4 504 26 HOH HOH . KA 14 HOH B 5 505 9 HOH HOH . KA 14 HOH B 6 506 2 HOH HOH . KA 14 HOH B 7 507 43 HOH HOH . KA 14 HOH B 8 508 44 HOH HOH . KA 14 HOH B 9 509 13 HOH HOH . KA 14 HOH B 10 510 27 HOH HOH . KA 14 HOH B 11 511 42 HOH HOH . KA 14 HOH B 12 512 34 HOH HOH . KA 14 HOH B 13 513 31 HOH HOH . KA 14 HOH B 14 514 24 HOH HOH . KA 14 HOH B 15 515 30 HOH HOH . KA 14 HOH B 16 516 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCA . . . O 3 33.845 28.289 -32.864 1 93.47 ? C1 OCA 413 A 1 HETATM 2 C C2 OCA . . . O 3 32.997 28.839 -31.722 1 94.34 ? C2 OCA 413 A 1 HETATM 3 C C3 OCA . . . O 3 33.659 29.758 -30.699 1 103.23 ? C3 OCA 413 A 1 HETATM 4 C C4 OCA . . . O 3 32.656 30.413 -29.723 1 100.8 ? C4 OCA 413 A 1 HETATM 5 C C5 OCA . . . O 3 32.045 29.515 -28.652 1 91.98 ? C5 OCA 413 A 1 HETATM 6 C C6 OCA . . . O 3 31.064 30.246 -27.749 1 97.86 ? C6 OCA 413 A 1 HETATM 7 C C7 OCA . . . O 3 31.617 30.738 -26.433 1 96.59 ? C7 OCA 413 A 1 HETATM 8 C C8 OCA . . . O 3 30.554 31.095 -25.401 1 94.36 ? C8 OCA 413 A 1 HETATM 9 O O1 OCA . . . O 3 34.924 28.85 -33.134 1 106.68 ? O1 OCA 413 A 1 HETATM 10 O O2 OCA . . . O 3 33.42 27.297 -33.496 1 86.37 ? O2 OCA 413 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #