data_9L3S # _model_server_result.job_id 7DPRcLE8fSjFPaQPi4ILmA _model_server_result.datetime_utc '2025-06-21 05:37:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 9L3S # _exptl.entry_id 9L3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.965 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperidin-4-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L3S _cell.length_a 127.304 _cell.length_b 127.304 _cell.length_c 255.405 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc2 A NE2 HIS 98 A HIS 84 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OD2 ASP 250 A ASP 236 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A O GLY 297 A GLY 283 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 A OD2 ASP 362 A ASP 348 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 A OD1 ASP 365 A ASP 351 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc7 A OD2 ASP 365 A ASP 351 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 A OD2 ASP 370 A ASP 356 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 A OD2 ASP 373 A ASP 359 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc10 B OD1 ASP 78 B ASP 64 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc11 B OD2 ASP 250 B ASP 236 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc12 B O GLY 297 B GLY 283 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 B OD2 ASP 362 B ASP 348 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc14 B OD1 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc15 B OD2 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc16 B OD2 ASP 370 B ASP 356 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc17 B OD2 ASP 373 B ASP 359 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C28 H27 Cl F5 N O' _chem_comp.formula_weight 523.965 _chem_comp.id A1L60 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4,4-bis(4-fluorophenyl)butyl]-4-[4-chloranyl-3-(trifluoromethyl)phenyl]piperidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Penfluridol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C20 A1L60 doub 54 n y C24 C28 A1L60 sing 55 n y F4 C27 A1L60 sing 56 n n F5 C28 A1L60 sing 57 n n C20 C15 A1L60 sing 58 n y C23 C27 A1L60 doub 59 n y C23 C19 A1L60 sing 60 n y C27 C25 A1L60 sing 61 n y C19 C14 A1L60 doub 62 n y C28 C26 A1L60 doub 63 n y C25 C21 A1L60 doub 64 n y C14 C21 A1L60 sing 65 n y C14 C10 A1L60 sing 66 n n C15 C10 A1L60 sing 67 n n C15 C22 A1L60 doub 68 n y C10 C9 A1L60 sing 69 n n C26 C22 A1L60 sing 70 n y C8 C9 A1L60 sing 71 n n C8 C6 A1L60 sing 72 n n C6 N1 A1L60 sing 73 n n C4 N1 A1L60 sing 74 n n C4 C2 A1L60 sing 75 n n N1 C5 A1L60 sing 76 n n C2 C1 A1L60 sing 77 n n C5 C3 A1L60 sing 78 n n O1 C1 A1L60 sing 79 n n C1 C3 A1L60 sing 80 n n C1 C7 A1L60 sing 81 n n C7 C11 A1L60 doub 82 n y C7 C12 A1L60 sing 83 n y F3 C18 A1L60 sing 84 n n C11 C13 A1L60 sing 85 n y C12 C16 A1L60 doub 86 n y C13 C18 A1L60 sing 87 n n C13 C17 A1L60 doub 88 n y C18 F2 A1L60 sing 89 n n C18 F1 A1L60 sing 90 n n C16 C17 A1L60 sing 91 n y C17 CL1 A1L60 sing 92 n n C4 H2 A1L60 sing 93 n n C4 H3 A1L60 sing 94 n n C5 H4 A1L60 sing 95 n n C5 H5 A1L60 sing 96 n n C6 H6 A1L60 sing 97 n n C6 H7 A1L60 sing 98 n n C8 H8 A1L60 sing 99 n n C8 H9 A1L60 sing 100 n n C10 H10 A1L60 sing 101 n n C20 H11 A1L60 sing 102 n n C21 H12 A1L60 sing 103 n n C22 H13 A1L60 sing 104 n n C24 H14 A1L60 sing 105 n n C26 H15 A1L60 sing 106 n n O1 H16 A1L60 sing 107 n n C2 H17 A1L60 sing 108 n n C2 H18 A1L60 sing 109 n n C3 H19 A1L60 sing 110 n n C3 H20 A1L60 sing 111 n n C9 H21 A1L60 sing 112 n n C9 H22 A1L60 sing 113 n n C11 H23 A1L60 sing 114 n n C12 H24 A1L60 sing 115 n n C16 H25 A1L60 sing 116 n n C19 H26 A1L60 sing 117 n n C23 H27 A1L60 sing 118 n n C25 H28 A1L60 sing 119 n n # _atom_sites.entry_id 9L3S _atom_sites.fract_transf_matrix[1][1] 0.007855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OCA A 1 401 402 OCA OCA . D 3 PPI A 1 402 405 PPI PPI . E 3 PPI A 1 403 406 PPI PPI . F 4 GOL A 1 404 407 GOL GOL . G 3 PPI A 1 405 408 PPI PPI . H 5 A1L60 A 1 406 409 A1L60 LIG . I 6 FMT A 1 407 410 FMT FMT . J 6 FMT A 1 408 411 FMT FMT . K 3 PPI A 1 409 412 PPI PPI . L 7 ZN A 1 410 1 ZN ZN . M 8 CA A 1 411 1 CA CA . N 9 6NA A 1 412 3 6NA 6NA . O 2 OCA A 1 413 1 OCA OCA . P 10 CL A 1 414 1 CL CL . Q 10 CL A 1 415 3 CL CL . R 10 CL A 1 416 4 CL CL . S 11 BUA A 1 417 1 BUA BUA . T 11 BUA B 1 401 403 BUA BUA . U 4 GOL B 1 402 406 GOL GOL . V 11 BUA B 1 403 407 BUA BUA . W 12 11A B 1 404 408 11A 11A . X 12 11A B 1 405 409 11A 11A . Y 5 A1L60 B 1 406 410 A1L60 LIG . Z 6 FMT B 1 407 411 FMT FMT . AA 6 FMT B 1 408 412 FMT FMT . BA 3 PPI B 1 409 413 PPI PPI . CA 7 ZN B 1 410 2 ZN ZN . DA 8 CA B 1 411 2 CA CA . EA 9 6NA B 1 412 2 6NA 6NA . FA 10 CL B 1 413 2 CL CL . GA 11 BUA B 1 414 2 BUA BUA . HA 11 BUA B 1 415 3 BUA BUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1L60 . . . H 5 27.734 30.807 -13.631 1 101.73 ? N1 A1L60 406 A 1 HETATM 2 C C4 A1L60 . . . H 5 26.443 30.49 -14.266 1 97.33 ? C4 A1L60 406 A 1 HETATM 3 C C5 A1L60 . . . H 5 27.798 30.165 -12.309 1 102.87 ? C5 A1L60 406 A 1 HETATM 4 C C6 A1L60 . . . H 5 28.828 30.355 -14.47 1 125.72 ? C6 A1L60 406 A 1 HETATM 5 C C7 A1L60 . . . H 5 24.635 32.08 -11.264 1 104.7 ? C7 A1L60 406 A 1 HETATM 6 C C8 A1L60 . . . H 5 28.347 29.554 -15.67 1 126.29 ? C8 A1L60 406 A 1 HETATM 7 C C10 A1L60 . . . H 5 29.436 28.197 -17.42 1 109.64 ? C10 A1L60 406 A 1 HETATM 8 C C13 A1L60 . . . H 5 23.274 33.791 -10.224 1 136.33 ? C13 A1L60 406 A 1 HETATM 9 C C15 A1L60 . . . H 5 28.559 26.992 -17.746 1 104.43 ? C15 A1L60 406 A 1 HETATM 10 C C17 A1L60 . . . H 5 22.559 32.748 -9.554 1 128.08 ? C17 A1L60 406 A 1 HETATM 11 C C20 A1L60 . . . H 5 28.168 26.838 -19.069 1 111.2 ? C20 A1L60 406 A 1 HETATM 12 C C21 A1L60 . . . H 5 31.574 26.814 -17.444 1 112.45 ? C21 A1L60 406 A 1 HETATM 13 C C22 A1L60 . . . H 5 28.15 26.037 -16.819 1 91.3 ? C22 A1L60 406 A 1 HETATM 14 C C24 A1L60 . . . H 5 27.386 25.768 -19.468 1 108.61 ? C24 A1L60 406 A 1 HETATM 15 C C26 A1L60 . . . H 5 27.367 24.962 -17.21 1 104.89 ? C26 A1L60 406 A 1 HETATM 16 C C28 A1L60 . . . H 5 27.013 24.865 -18.528 1 112.1 ? C28 A1L60 406 A 1 HETATM 17 CL CL1 A1L60 . . . H 5 21.224 32.994 -8.473 1 168.51 ? CL1 A1L60 406 A 1 HETATM 18 F F1 A1L60 . . . H 5 22.053 35.582 -9.245 1 140.69 ? F1 A1L60 406 A 1 HETATM 19 F F2 A1L60 . . . H 5 24.06 35.959 -9.679 1 169.03 ? F2 A1L60 406 A 1 HETATM 20 F F3 A1L60 . . . H 5 22.788 35.93 -11.274 1 129.66 ? F3 A1L60 406 A 1 HETATM 21 F F4 A1L60 . . . H 5 34.748 27.298 -19.089 1 159.92 ? F4 A1L60 406 A 1 HETATM 22 F F5 A1L60 . . . H 5 26.247 23.822 -18.937 1 131.71 ? F5 A1L60 406 A 1 HETATM 23 O O1 A1L60 . . . H 5 26.552 32.886 -12.493 1 89 ? O1 A1L60 406 A 1 HETATM 24 C C1 A1L60 . . . H 5 25.81 31.709 -12.159 1 106.44 ? C1 A1L60 406 A 1 HETATM 25 C C2 A1L60 . . . H 5 25.303 30.934 -13.38 1 103.84 ? C2 A1L60 406 A 1 HETATM 26 C C3 A1L60 . . . H 5 26.786 30.808 -11.39 1 112.03 ? C3 A1L60 406 A 1 HETATM 27 C C9 A1L60 . . . H 5 29.369 28.502 -15.928 1 116.29 ? C9 A1L60 406 A 1 HETATM 28 C C11 A1L60 . . . H 5 24.316 33.411 -11.059 1 103.69 ? C11 A1L60 406 A 1 HETATM 29 C C12 A1L60 . . . H 5 23.903 31.094 -10.606 1 116.8 ? C12 A1L60 406 A 1 HETATM 30 C C14 A1L60 . . . H 5 30.877 27.95 -17.858 1 119.38 ? C14 A1L60 406 A 1 HETATM 31 C C16 A1L60 . . . H 5 22.871 31.424 -9.749 1 109.91 ? C16 A1L60 406 A 1 HETATM 32 C C18 A1L60 . . . H 5 23.008 35.281 -10.098 1 141.59 ? C18 A1L60 406 A 1 HETATM 33 C C19 A1L60 . . . H 5 31.518 28.862 -18.694 1 104.84 ? C19 A1L60 406 A 1 HETATM 34 C C23 A1L60 . . . H 5 32.827 28.654 -19.107 1 114.53 ? C23 A1L60 406 A 1 HETATM 35 C C25 A1L60 . . . H 5 32.878 26.589 -17.86 1 114.2 ? C25 A1L60 406 A 1 HETATM 36 C C27 A1L60 . . . H 5 33.466 27.516 -18.68 1 132.78 ? C27 A1L60 406 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 594 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #