data_9L3S # _model_server_result.job_id RJInuqKGQQBEWfPa1_ZExQ _model_server_result.datetime_utc '2025-06-21 05:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":412}' # _entry.id 9L3S # _exptl.entry_id 9L3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.158 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L3S _cell.length_a 127.304 _cell.length_b 127.304 _cell.length_c 255.405 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 78 A ASP 64 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc2 A NE2 HIS 98 A HIS 84 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A OD2 ASP 250 A ASP 236 1_555 L ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A O GLY 297 A GLY 283 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 A OD2 ASP 362 A ASP 348 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 A OD1 ASP 365 A ASP 351 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc7 A OD2 ASP 365 A ASP 351 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc8 A OD2 ASP 370 A ASP 356 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 A OD2 ASP 373 A ASP 359 1_555 M CA CA . A CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc10 B OD1 ASP 78 B ASP 64 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc11 B OD2 ASP 250 B ASP 236 1_555 CA ZN ZN . B ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc12 B O GLY 297 B GLY 283 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 B OD2 ASP 362 B ASP 348 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc14 B OD1 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc15 B OD2 ASP 365 B ASP 351 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc16 B OD2 ASP 370 B ASP 356 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc17 B OD2 ASP 373 B ASP 359 1_555 DA CA CA . B CA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C6 H12 O2' _chem_comp.formula_weight 116.158 _chem_comp.id 6NA _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 6NA sing 35 n n CA CB 6NA sing 36 n n CA HAC1 6NA sing 37 n n CA HAC2 6NA sing 38 n n C O 6NA doub 39 n n C OXT 6NA sing 40 n n CB CG 6NA sing 41 n n CB HBC1 6NA sing 42 n n CB HBC2 6NA sing 43 n n CG CD 6NA sing 44 n n CG HGC1 6NA sing 45 n n CG HGC2 6NA sing 46 n n CD C6 6NA sing 47 n n CD HDC1 6NA sing 48 n n CD HDC2 6NA sing 49 n n C6 H6C1 6NA sing 50 n n C6 H6C2 6NA sing 51 n n C6 H6C3 6NA sing 52 n n OXT HXT 6NA sing 53 n n # _atom_sites.entry_id 9L3S _atom_sites.fract_transf_matrix[1][1] 0.007855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OCA A 1 401 402 OCA OCA . D 3 PPI A 1 402 405 PPI PPI . E 3 PPI A 1 403 406 PPI PPI . F 4 GOL A 1 404 407 GOL GOL . G 3 PPI A 1 405 408 PPI PPI . H 5 A1L60 A 1 406 409 A1L60 LIG . I 6 FMT A 1 407 410 FMT FMT . J 6 FMT A 1 408 411 FMT FMT . K 3 PPI A 1 409 412 PPI PPI . L 7 ZN A 1 410 1 ZN ZN . M 8 CA A 1 411 1 CA CA . N 9 6NA A 1 412 3 6NA 6NA . O 2 OCA A 1 413 1 OCA OCA . P 10 CL A 1 414 1 CL CL . Q 10 CL A 1 415 3 CL CL . R 10 CL A 1 416 4 CL CL . S 11 BUA A 1 417 1 BUA BUA . T 11 BUA B 1 401 403 BUA BUA . U 4 GOL B 1 402 406 GOL GOL . V 11 BUA B 1 403 407 BUA BUA . W 12 11A B 1 404 408 11A 11A . X 12 11A B 1 405 409 11A 11A . Y 5 A1L60 B 1 406 410 A1L60 LIG . Z 6 FMT B 1 407 411 FMT FMT . AA 6 FMT B 1 408 412 FMT FMT . BA 3 PPI B 1 409 413 PPI PPI . CA 7 ZN B 1 410 2 ZN ZN . DA 8 CA B 1 411 2 CA CA . EA 9 6NA B 1 412 2 6NA 6NA . FA 10 CL B 1 413 2 CL CL . GA 11 BUA B 1 414 2 BUA BUA . HA 11 BUA B 1 415 3 BUA BUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 6NA . . . EA 9 48.374 35.121 -30.107 1 134.19 ? CA 6NA 412 B 1 HETATM 2 C C 6NA . . . EA 9 47.236 35.207 -31.131 1 131.47 ? C 6NA 412 B 1 HETATM 3 O O 6NA . . . EA 9 46.533 34.202 -31.298 1 147.93 ? O 6NA 412 B 1 HETATM 4 C CB 6NA . . . EA 9 48.741 33.753 -29.508 1 135.57 ? CB 6NA 412 B 1 HETATM 5 C CG 6NA . . . EA 9 48.651 33.689 -27.968 1 160.84 ? CG 6NA 412 B 1 HETATM 6 C CD 6NA . . . EA 9 48.429 32.352 -27.232 1 139.25 ? CD 6NA 412 B 1 HETATM 7 C C6 6NA . . . EA 9 48.077 32.364 -25.744 1 97.75 ? C6 6NA 412 B 1 HETATM 8 O OXT 6NA . . . EA 9 47.031 36.28 -31.769 1 95.03 ? OXT 6NA 412 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #