data_9L8I # _model_server_result.job_id A-QTnrCuOSTFAaUc1xiNEg _model_server_result.datetime_utc '2025-08-01 12:32:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9l8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 9L8I # _exptl.entry_id 9L8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9L8I _cell.length_a 41.791 _cell.length_b 87.184 _cell.length_c 93.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9L8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BMA _pdbx_entity_branch_link.comp_id_2 BMA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BMA 1 B 1 BMA B 1 MAB 2 n B BMA 2 B 2 BMA B 1 MAB # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id BMA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id BMA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id BMA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id BMA _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.422 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 284 n n P O2 PO4 sing 285 n n P O3 PO4 sing 286 n n P O4 PO4 sing 287 n n # _atom_sites.entry_id 9L8I _atom_sites.fract_transf_matrix[1][1] 0.023929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 501 1 CL CL . D 4 PO4 A 1 502 1 PO4 PO4 . E 5 HOH A 1 601 238 HOH HOH . E 5 HOH A 2 602 134 HOH HOH . E 5 HOH A 3 603 121 HOH HOH . E 5 HOH A 4 604 219 HOH HOH . E 5 HOH A 5 605 155 HOH HOH . E 5 HOH A 6 606 143 HOH HOH . E 5 HOH A 7 607 62 HOH HOH . E 5 HOH A 8 608 279 HOH HOH . E 5 HOH A 9 609 99 HOH HOH . E 5 HOH A 10 610 46 HOH HOH . E 5 HOH A 11 611 216 HOH HOH . E 5 HOH A 12 612 38 HOH HOH . E 5 HOH A 13 613 44 HOH HOH . E 5 HOH A 14 614 132 HOH HOH . E 5 HOH A 15 615 303 HOH HOH . E 5 HOH A 16 616 104 HOH HOH . E 5 HOH A 17 617 94 HOH HOH . E 5 HOH A 18 618 116 HOH HOH . E 5 HOH A 19 619 124 HOH HOH . E 5 HOH A 20 620 48 HOH HOH . E 5 HOH A 21 621 257 HOH HOH . E 5 HOH A 22 622 229 HOH HOH . E 5 HOH A 23 623 28 HOH HOH . E 5 HOH A 24 624 55 HOH HOH . E 5 HOH A 25 625 305 HOH HOH . E 5 HOH A 26 626 5 HOH HOH . E 5 HOH A 27 627 58 HOH HOH . E 5 HOH A 28 628 148 HOH HOH . E 5 HOH A 29 629 165 HOH HOH . E 5 HOH A 30 630 24 HOH HOH . E 5 HOH A 31 631 7 HOH HOH . E 5 HOH A 32 632 92 HOH HOH . E 5 HOH A 33 633 72 HOH HOH . E 5 HOH A 34 634 259 HOH HOH . E 5 HOH A 35 635 169 HOH HOH . E 5 HOH A 36 636 36 HOH HOH . E 5 HOH A 37 637 12 HOH HOH . E 5 HOH A 38 638 100 HOH HOH . E 5 HOH A 39 639 200 HOH HOH . E 5 HOH A 40 640 35 HOH HOH . E 5 HOH A 41 641 60 HOH HOH . E 5 HOH A 42 642 52 HOH HOH . E 5 HOH A 43 643 237 HOH HOH . E 5 HOH A 44 644 51 HOH HOH . E 5 HOH A 45 645 8 HOH HOH . E 5 HOH A 46 646 86 HOH HOH . E 5 HOH A 47 647 18 HOH HOH . E 5 HOH A 48 648 50 HOH HOH . E 5 HOH A 49 649 161 HOH HOH . E 5 HOH A 50 650 147 HOH HOH . E 5 HOH A 51 651 211 HOH HOH . E 5 HOH A 52 652 113 HOH HOH . E 5 HOH A 53 653 198 HOH HOH . E 5 HOH A 54 654 197 HOH HOH . E 5 HOH A 55 655 298 HOH HOH . E 5 HOH A 56 656 19 HOH HOH . E 5 HOH A 57 657 25 HOH HOH . E 5 HOH A 58 658 227 HOH HOH . E 5 HOH A 59 659 196 HOH HOH . E 5 HOH A 60 660 186 HOH HOH . E 5 HOH A 61 661 70 HOH HOH . E 5 HOH A 62 662 4 HOH HOH . E 5 HOH A 63 663 2 HOH HOH . E 5 HOH A 64 664 80 HOH HOH . E 5 HOH A 65 665 63 HOH HOH . E 5 HOH A 66 666 31 HOH HOH . E 5 HOH A 67 667 151 HOH HOH . E 5 HOH A 68 668 90 HOH HOH . E 5 HOH A 69 669 127 HOH HOH . E 5 HOH A 70 670 239 HOH HOH . E 5 HOH A 71 671 23 HOH HOH . E 5 HOH A 72 672 98 HOH HOH . E 5 HOH A 73 673 68 HOH HOH . E 5 HOH A 74 674 97 HOH HOH . E 5 HOH A 75 675 75 HOH HOH . E 5 HOH A 76 676 42 HOH HOH . E 5 HOH A 77 677 85 HOH HOH . E 5 HOH A 78 678 135 HOH HOH . E 5 HOH A 79 679 22 HOH HOH . E 5 HOH A 80 680 43 HOH HOH . E 5 HOH A 81 681 15 HOH HOH . E 5 HOH A 82 682 120 HOH HOH . E 5 HOH A 83 683 74 HOH HOH . E 5 HOH A 84 684 213 HOH HOH . E 5 HOH A 85 685 10 HOH HOH . E 5 HOH A 86 686 78 HOH HOH . E 5 HOH A 87 687 32 HOH HOH . E 5 HOH A 88 688 268 HOH HOH . E 5 HOH A 89 689 138 HOH HOH . E 5 HOH A 90 690 82 HOH HOH . E 5 HOH A 91 691 41 HOH HOH . E 5 HOH A 92 692 39 HOH HOH . E 5 HOH A 93 693 53 HOH HOH . E 5 HOH A 94 694 89 HOH HOH . E 5 HOH A 95 695 194 HOH HOH . E 5 HOH A 96 696 79 HOH HOH . E 5 HOH A 97 697 6 HOH HOH . E 5 HOH A 98 698 133 HOH HOH . E 5 HOH A 99 699 174 HOH HOH . E 5 HOH A 100 700 193 HOH HOH . E 5 HOH A 101 701 187 HOH HOH . E 5 HOH A 102 702 163 HOH HOH . E 5 HOH A 103 703 141 HOH HOH . E 5 HOH A 104 704 93 HOH HOH . E 5 HOH A 105 705 91 HOH HOH . E 5 HOH A 106 706 188 HOH HOH . E 5 HOH A 107 707 107 HOH HOH . E 5 HOH A 108 708 14 HOH HOH . E 5 HOH A 109 709 256 HOH HOH . E 5 HOH A 110 710 224 HOH HOH . E 5 HOH A 111 711 152 HOH HOH . E 5 HOH A 112 712 203 HOH HOH . E 5 HOH A 113 713 129 HOH HOH . E 5 HOH A 114 714 20 HOH HOH . E 5 HOH A 115 715 11 HOH HOH . E 5 HOH A 116 716 88 HOH HOH . E 5 HOH A 117 717 179 HOH HOH . E 5 HOH A 118 718 83 HOH HOH . E 5 HOH A 119 719 183 HOH HOH . E 5 HOH A 120 720 54 HOH HOH . E 5 HOH A 121 721 208 HOH HOH . E 5 HOH A 122 722 205 HOH HOH . E 5 HOH A 123 723 157 HOH HOH . E 5 HOH A 124 724 9 HOH HOH . E 5 HOH A 125 725 281 HOH HOH . E 5 HOH A 126 726 158 HOH HOH . E 5 HOH A 127 727 64 HOH HOH . E 5 HOH A 128 728 26 HOH HOH . E 5 HOH A 129 729 59 HOH HOH . E 5 HOH A 130 730 206 HOH HOH . E 5 HOH A 131 731 114 HOH HOH . E 5 HOH A 132 732 65 HOH HOH . E 5 HOH A 133 733 204 HOH HOH . E 5 HOH A 134 734 117 HOH HOH . E 5 HOH A 135 735 71 HOH HOH . E 5 HOH A 136 736 21 HOH HOH . E 5 HOH A 137 737 167 HOH HOH . E 5 HOH A 138 738 189 HOH HOH . E 5 HOH A 139 739 95 HOH HOH . E 5 HOH A 140 740 3 HOH HOH . E 5 HOH A 141 741 45 HOH HOH . E 5 HOH A 142 742 254 HOH HOH . E 5 HOH A 143 743 221 HOH HOH . E 5 HOH A 144 744 103 HOH HOH . E 5 HOH A 145 745 131 HOH HOH . E 5 HOH A 146 746 225 HOH HOH . E 5 HOH A 147 747 207 HOH HOH . E 5 HOH A 148 748 218 HOH HOH . E 5 HOH A 149 749 172 HOH HOH . E 5 HOH A 150 750 137 HOH HOH . E 5 HOH A 151 751 34 HOH HOH . E 5 HOH A 152 752 69 HOH HOH . E 5 HOH A 153 753 181 HOH HOH . E 5 HOH A 154 754 214 HOH HOH . E 5 HOH A 155 755 33 HOH HOH . E 5 HOH A 156 756 96 HOH HOH . E 5 HOH A 157 757 170 HOH HOH . E 5 HOH A 158 758 37 HOH HOH . E 5 HOH A 159 759 182 HOH HOH . E 5 HOH A 160 760 222 HOH HOH . E 5 HOH A 161 761 30 HOH HOH . E 5 HOH A 162 762 178 HOH HOH . E 5 HOH A 163 763 56 HOH HOH . E 5 HOH A 164 764 177 HOH HOH . E 5 HOH A 165 765 40 HOH HOH . E 5 HOH A 166 766 144 HOH HOH . E 5 HOH A 167 767 278 HOH HOH . E 5 HOH A 168 768 110 HOH HOH . E 5 HOH A 169 769 130 HOH HOH . E 5 HOH A 170 770 84 HOH HOH . E 5 HOH A 171 771 76 HOH HOH . E 5 HOH A 172 772 109 HOH HOH . E 5 HOH A 173 773 241 HOH HOH . E 5 HOH A 174 774 81 HOH HOH . E 5 HOH A 175 775 57 HOH HOH . E 5 HOH A 176 776 102 HOH HOH . E 5 HOH A 177 777 118 HOH HOH . E 5 HOH A 178 778 122 HOH HOH . E 5 HOH A 179 779 240 HOH HOH . E 5 HOH A 180 780 47 HOH HOH . E 5 HOH A 181 781 287 HOH HOH . E 5 HOH A 182 782 243 HOH HOH . E 5 HOH A 183 783 175 HOH HOH . E 5 HOH A 184 784 125 HOH HOH . E 5 HOH A 185 785 145 HOH HOH . E 5 HOH A 186 786 139 HOH HOH . E 5 HOH A 187 787 164 HOH HOH . E 5 HOH A 188 788 176 HOH HOH . E 5 HOH A 189 789 220 HOH HOH . E 5 HOH A 190 790 156 HOH HOH . E 5 HOH A 191 791 61 HOH HOH . E 5 HOH A 192 792 228 HOH HOH . E 5 HOH A 193 793 180 HOH HOH . E 5 HOH A 194 794 246 HOH HOH . E 5 HOH A 195 795 27 HOH HOH . E 5 HOH A 196 796 266 HOH HOH . E 5 HOH A 197 797 119 HOH HOH . E 5 HOH A 198 798 66 HOH HOH . E 5 HOH A 199 799 112 HOH HOH . E 5 HOH A 200 800 270 HOH HOH . E 5 HOH A 201 801 150 HOH HOH . E 5 HOH A 202 802 16 HOH HOH . E 5 HOH A 203 803 201 HOH HOH . E 5 HOH A 204 804 29 HOH HOH . E 5 HOH A 205 805 173 HOH HOH . E 5 HOH A 206 806 245 HOH HOH . E 5 HOH A 207 807 315 HOH HOH . E 5 HOH A 208 808 17 HOH HOH . E 5 HOH A 209 809 77 HOH HOH . E 5 HOH A 210 810 244 HOH HOH . E 5 HOH A 211 811 261 HOH HOH . E 5 HOH A 212 812 248 HOH HOH . E 5 HOH A 213 813 249 HOH HOH . E 5 HOH A 214 814 136 HOH HOH . E 5 HOH A 215 815 13 HOH HOH . E 5 HOH A 216 816 106 HOH HOH . E 5 HOH A 217 817 87 HOH HOH . E 5 HOH A 218 818 300 HOH HOH . E 5 HOH A 219 819 264 HOH HOH . E 5 HOH A 220 820 171 HOH HOH . E 5 HOH A 221 821 306 HOH HOH . E 5 HOH A 222 822 195 HOH HOH . E 5 HOH A 223 823 159 HOH HOH . E 5 HOH A 224 824 160 HOH HOH . E 5 HOH A 225 825 105 HOH HOH . E 5 HOH A 226 826 272 HOH HOH . E 5 HOH A 227 827 212 HOH HOH . E 5 HOH A 228 828 101 HOH HOH . E 5 HOH A 229 829 299 HOH HOH . E 5 HOH A 230 830 236 HOH HOH . E 5 HOH A 231 831 284 HOH HOH . E 5 HOH A 232 832 233 HOH HOH . E 5 HOH A 233 833 255 HOH HOH . E 5 HOH A 234 834 295 HOH HOH . E 5 HOH A 235 835 128 HOH HOH . E 5 HOH A 236 836 275 HOH HOH . E 5 HOH A 237 837 185 HOH HOH . E 5 HOH A 238 838 277 HOH HOH . E 5 HOH A 239 839 276 HOH HOH . E 5 HOH A 240 840 140 HOH HOH . E 5 HOH A 241 841 258 HOH HOH . E 5 HOH A 242 842 192 HOH HOH . E 5 HOH A 243 843 310 HOH HOH . E 5 HOH A 244 844 260 HOH HOH . E 5 HOH A 245 845 115 HOH HOH . E 5 HOH A 246 846 108 HOH HOH . E 5 HOH A 247 847 290 HOH HOH . E 5 HOH A 248 848 190 HOH HOH . E 5 HOH A 249 849 252 HOH HOH . E 5 HOH A 250 850 291 HOH HOH . E 5 HOH A 251 851 215 HOH HOH . E 5 HOH A 252 852 209 HOH HOH . E 5 HOH A 253 853 166 HOH HOH . E 5 HOH A 254 854 73 HOH HOH . E 5 HOH A 255 855 286 HOH HOH . E 5 HOH A 256 856 49 HOH HOH . E 5 HOH A 257 857 210 HOH HOH . E 5 HOH A 258 858 217 HOH HOH . E 5 HOH A 259 859 273 HOH HOH . E 5 HOH A 260 860 296 HOH HOH . E 5 HOH A 261 861 67 HOH HOH . E 5 HOH A 262 862 247 HOH HOH . E 5 HOH A 263 863 274 HOH HOH . E 5 HOH A 264 864 282 HOH HOH . E 5 HOH A 265 865 123 HOH HOH . E 5 HOH A 266 866 242 HOH HOH . E 5 HOH A 267 867 184 HOH HOH . E 5 HOH A 268 868 162 HOH HOH . E 5 HOH A 269 869 251 HOH HOH . E 5 HOH A 270 870 226 HOH HOH . E 5 HOH A 271 871 149 HOH HOH . E 5 HOH A 272 872 230 HOH HOH . E 5 HOH A 273 873 231 HOH HOH . E 5 HOH A 274 874 289 HOH HOH . E 5 HOH A 275 875 223 HOH HOH . E 5 HOH A 276 876 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 -4.307 23.612 65.181 1 25.49 ? P PO4 502 A 1 HETATM 2 O O1 PO4 . . . D 4 -4.162 24.624 64.067 1 23.89 ? O1 PO4 502 A 1 HETATM 3 O O2 PO4 . . . D 4 -5.466 24.101 66.027 1 25.56 ? O2 PO4 502 A 1 HETATM 4 O O3 PO4 . . . D 4 -4.571 22.262 64.546 1 24.99 ? O3 PO4 502 A 1 HETATM 5 O O4 PO4 . . . D 4 -3.01 23.562 65.977 1 25.39 ? O4 PO4 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #