data_9LDB # _model_server_result.job_id 31lXFEoqIWNPBC8zGheo6w _model_server_result.datetime_utc '2024-11-22 19:09:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ldb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 9LDB # _exptl.entry_id 9LDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.05 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9LDB _cell.length_a 60.3 _cell.length_b 136.39 _cell.length_c 86.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N ALA 2 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale2 B C ACE 1 B ACE 0 1_555 B N ALA 2 B ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'C2 H3 N O3' _chem_comp.formula_weight 89.05 _chem_comp.id OXM _chem_comp.mon_nstd_flag . _chem_comp.name 'OXAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 OXM sing 318 n n C1 O1 OXM doub 319 n n C1 C2 OXM sing 320 n n N1 HN1 OXM sing 321 n n N1 HN2 OXM sing 322 n n C2 O2 OXM doub 323 n n C2 O3 OXM sing 324 n n O3 HO3 OXM sing 325 n n # _atom_sites.entry_id 9LDB _atom_sites.fract_transf_matrix[1][1] 0.016584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 402 402 SO4 SO4 . D 2 SO4 A 1 403 403 SO4 SO4 . E 3 NAD A 1 401 401 NAD NAD . F 2 SO4 B 1 403 403 SO4 SO4 . G 3 NAD B 1 401 401 NAD NAD . H 4 OXM B 1 402 402 OXM OXM . I 5 HOH A 1 404 1 HOH HOH . I 5 HOH A 2 405 2 HOH HOH . I 5 HOH A 3 406 3 HOH HOH . I 5 HOH A 4 407 4 HOH HOH . I 5 HOH A 5 408 5 HOH HOH . I 5 HOH A 6 409 6 HOH HOH . I 5 HOH A 7 410 7 HOH HOH . I 5 HOH A 8 411 8 HOH HOH . I 5 HOH A 9 412 9 HOH HOH . I 5 HOH A 10 413 10 HOH HOH . I 5 HOH A 11 414 11 HOH HOH . I 5 HOH A 12 415 12 HOH HOH . I 5 HOH A 13 416 13 HOH HOH . I 5 HOH A 14 417 14 HOH HOH . I 5 HOH A 15 418 15 HOH HOH . I 5 HOH A 16 419 16 HOH HOH . I 5 HOH A 17 420 17 HOH HOH . I 5 HOH A 18 421 18 HOH HOH . I 5 HOH A 19 422 19 HOH HOH . I 5 HOH A 20 423 20 HOH HOH . I 5 HOH A 21 424 21 HOH HOH . I 5 HOH A 22 425 23 HOH HOH . I 5 HOH A 23 426 24 HOH HOH . I 5 HOH A 24 427 25 HOH HOH . I 5 HOH A 25 428 27 HOH HOH . I 5 HOH A 26 429 28 HOH HOH . I 5 HOH A 27 430 29 HOH HOH . I 5 HOH A 28 431 30 HOH HOH . I 5 HOH A 29 432 31 HOH HOH . I 5 HOH A 30 433 32 HOH HOH . I 5 HOH A 31 434 33 HOH HOH . I 5 HOH A 32 435 34 HOH HOH . I 5 HOH A 33 436 35 HOH HOH . I 5 HOH A 34 437 36 HOH HOH . I 5 HOH A 35 438 37 HOH HOH . I 5 HOH A 36 439 38 HOH HOH . I 5 HOH A 37 440 39 HOH HOH . I 5 HOH A 38 441 40 HOH HOH . I 5 HOH A 39 442 41 HOH HOH . I 5 HOH A 40 443 42 HOH HOH . I 5 HOH A 41 444 43 HOH HOH . I 5 HOH A 42 445 44 HOH HOH . I 5 HOH A 43 446 45 HOH HOH . I 5 HOH A 44 447 47 HOH HOH . I 5 HOH A 45 448 48 HOH HOH . I 5 HOH A 46 449 49 HOH HOH . I 5 HOH A 47 450 50 HOH HOH . I 5 HOH A 48 451 51 HOH HOH . I 5 HOH A 49 452 52 HOH HOH . I 5 HOH A 50 453 53 HOH HOH . I 5 HOH A 51 454 54 HOH HOH . I 5 HOH A 52 455 55 HOH HOH . I 5 HOH A 53 456 56 HOH HOH . I 5 HOH A 54 457 57 HOH HOH . I 5 HOH A 55 458 58 HOH HOH . I 5 HOH A 56 459 59 HOH HOH . I 5 HOH A 57 460 60 HOH HOH . I 5 HOH A 58 461 61 HOH HOH . I 5 HOH A 59 462 62 HOH HOH . I 5 HOH A 60 463 63 HOH HOH . I 5 HOH A 61 464 64 HOH HOH . I 5 HOH A 62 465 65 HOH HOH . I 5 HOH A 63 466 66 HOH HOH . I 5 HOH A 64 467 67 HOH HOH . I 5 HOH A 65 468 68 HOH HOH . I 5 HOH A 66 469 69 HOH HOH . I 5 HOH A 67 470 70 HOH HOH . I 5 HOH A 68 471 71 HOH HOH . I 5 HOH A 69 472 72 HOH HOH . I 5 HOH A 70 473 73 HOH HOH . I 5 HOH A 71 474 74 HOH HOH . I 5 HOH A 72 475 75 HOH HOH . I 5 HOH A 73 476 76 HOH HOH . I 5 HOH A 74 477 77 HOH HOH . I 5 HOH A 75 478 101 HOH HOH . I 5 HOH A 76 479 102 HOH HOH . I 5 HOH A 77 480 103 HOH HOH . I 5 HOH A 78 481 120 HOH HOH . I 5 HOH A 79 482 147 HOH HOH . I 5 HOH A 80 483 149 HOH HOH . I 5 HOH A 81 484 150 HOH HOH . J 5 HOH B 1 404 22 HOH HOH . J 5 HOH B 2 405 26 HOH HOH . J 5 HOH B 3 406 46 HOH HOH . J 5 HOH B 4 407 78 HOH HOH . J 5 HOH B 5 408 79 HOH HOH . J 5 HOH B 6 409 80 HOH HOH . J 5 HOH B 7 410 81 HOH HOH . J 5 HOH B 8 411 82 HOH HOH . J 5 HOH B 9 412 83 HOH HOH . J 5 HOH B 10 413 84 HOH HOH . J 5 HOH B 11 414 85 HOH HOH . J 5 HOH B 12 415 86 HOH HOH . J 5 HOH B 13 416 87 HOH HOH . J 5 HOH B 14 417 88 HOH HOH . J 5 HOH B 15 418 89 HOH HOH . J 5 HOH B 16 419 90 HOH HOH . J 5 HOH B 17 420 91 HOH HOH . J 5 HOH B 18 421 92 HOH HOH . J 5 HOH B 19 422 93 HOH HOH . J 5 HOH B 20 423 94 HOH HOH . J 5 HOH B 21 424 95 HOH HOH . J 5 HOH B 22 425 96 HOH HOH . J 5 HOH B 23 426 97 HOH HOH . J 5 HOH B 24 427 98 HOH HOH . J 5 HOH B 25 428 99 HOH HOH . J 5 HOH B 26 429 100 HOH HOH . J 5 HOH B 27 430 104 HOH HOH . J 5 HOH B 28 431 105 HOH HOH . J 5 HOH B 29 432 106 HOH HOH . J 5 HOH B 30 433 107 HOH HOH . J 5 HOH B 31 434 108 HOH HOH . J 5 HOH B 32 435 109 HOH HOH . J 5 HOH B 33 436 110 HOH HOH . J 5 HOH B 34 437 111 HOH HOH . J 5 HOH B 35 438 112 HOH HOH . J 5 HOH B 36 439 113 HOH HOH . J 5 HOH B 37 440 114 HOH HOH . J 5 HOH B 38 441 115 HOH HOH . J 5 HOH B 39 442 116 HOH HOH . J 5 HOH B 40 443 117 HOH HOH . J 5 HOH B 41 444 118 HOH HOH . J 5 HOH B 42 445 119 HOH HOH . J 5 HOH B 43 446 121 HOH HOH . J 5 HOH B 44 447 122 HOH HOH . J 5 HOH B 45 448 123 HOH HOH . J 5 HOH B 46 449 124 HOH HOH . J 5 HOH B 47 450 125 HOH HOH . J 5 HOH B 48 451 126 HOH HOH . J 5 HOH B 49 452 127 HOH HOH . J 5 HOH B 50 453 128 HOH HOH . J 5 HOH B 51 454 129 HOH HOH . J 5 HOH B 52 455 130 HOH HOH . J 5 HOH B 53 456 131 HOH HOH . J 5 HOH B 54 457 132 HOH HOH . J 5 HOH B 55 458 133 HOH HOH . J 5 HOH B 56 459 134 HOH HOH . J 5 HOH B 57 460 135 HOH HOH . J 5 HOH B 58 461 136 HOH HOH . J 5 HOH B 59 462 137 HOH HOH . J 5 HOH B 60 463 138 HOH HOH . J 5 HOH B 61 464 139 HOH HOH . J 5 HOH B 62 465 140 HOH HOH . J 5 HOH B 63 466 141 HOH HOH . J 5 HOH B 64 467 142 HOH HOH . J 5 HOH B 65 468 143 HOH HOH . J 5 HOH B 66 469 144 HOH HOH . J 5 HOH B 67 470 145 HOH HOH . J 5 HOH B 68 471 146 HOH HOH . J 5 HOH B 69 472 148 HOH HOH . J 5 HOH B 70 473 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OXM . . . H 4 9.295 21.412 -8.148 1 8.62 ? C1 OXM 402 B 1 HETATM 2 N N1 OXM . . . H 4 9.291 22.703 -7.128 1 7.42 ? N1 OXM 402 B 1 HETATM 3 O O1 OXM . . . H 4 10.272 21.25 -9.086 1 9.69 ? O1 OXM 402 B 1 HETATM 4 C C2 OXM . . . H 4 7.977 21.049 -8.094 1 9.4 ? C2 OXM 402 B 1 HETATM 5 O O2 OXM . . . H 4 7.918 20.39 -9.237 1 8.84 ? O2 OXM 402 B 1 HETATM 6 O O3 OXM . . . H 4 6.877 21.219 -7.417 1 10.29 ? O3 OXM 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #