data_9LID # _model_server_result.job_id qFzUUA0uffMc284s_nkADA _model_server_result.datetime_utc '2025-07-05 12:46:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9lid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9LID # _exptl.entry_id 9LID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[7-azanyl-8-(7-fluoranyl-1H-indazol-4-yl)-6-oxidanylidene-5H-1,5-naphthyridin-3-yl]-N,N-dimethyl-benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.33 _cell.angle_gamma 90 _cell.entry_id 9LID _cell.length_a 50.484 _cell.length_b 112.359 _cell.length_c 72.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LID _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,O 1 1 B,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C24 H19 F N6 O2' _chem_comp.formula_weight 442.445 _chem_comp.id A1EJX _chem_comp.mon_nstd_flag . _chem_comp.name 4-[7-azanyl-8-(7-fluoranyl-1H-indazol-4-yl)-6-oxidanylidene-5H-1,5-naphthyridin-3-yl]-N,N-dimethyl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C1 A1EJX doub 1 n n C1 N3 A1EJX sing 2 n n C1 C2 A1EJX sing 3 n n N23 C22 A1EJX doub 4 n y N23 N21 A1EJX sing 5 n y N20 C2 A1EJX sing 6 n n C22 C7 A1EJX sing 7 n y N3 C13 A1EJX sing 8 n n C2 C4 A1EJX doub 9 n n N21 C8 A1EJX sing 10 n y C7 C8 A1EJX doub 11 n y C7 C6 A1EJX sing 12 n y C13 C15 A1EJX doub 13 n y C13 C5 A1EJX sing 14 n y C4 C5 A1EJX sing 15 n n C4 C6 A1EJX sing 16 n n C15 C17 A1EJX sing 17 n y C5 N14 A1EJX doub 18 n y C8 C9 A1EJX sing 19 n y C6 C11 A1EJX doub 20 n y C28 C27 A1EJX doub 21 n y C28 C19 A1EJX sing 22 n y C27 C26 A1EJX sing 23 n y C17 C19 A1EJX sing 24 n n C17 C16 A1EJX doub 25 n y N14 C16 A1EJX sing 26 n y C19 C24 A1EJX doub 27 n y O31 C29 A1EJX doub 28 n n C9 F12 A1EJX sing 29 n n C9 C10 A1EJX doub 30 n y C11 C10 A1EJX sing 31 n y C26 C29 A1EJX sing 32 n n C26 C25 A1EJX doub 33 n y C29 N30 A1EJX sing 34 n n C24 C25 A1EJX sing 35 n y N30 C32 A1EJX sing 36 n n N30 C33 A1EJX sing 37 n n C10 H1 A1EJX sing 38 n n C11 H2 A1EJX sing 39 n n C15 H3 A1EJX sing 40 n n C16 H4 A1EJX sing 41 n n C22 H5 A1EJX sing 42 n n C24 H6 A1EJX sing 43 n n C25 H7 A1EJX sing 44 n n C27 H8 A1EJX sing 45 n n C28 H9 A1EJX sing 46 n n C32 H10 A1EJX sing 47 n n C32 H11 A1EJX sing 48 n n C32 H12 A1EJX sing 49 n n C33 H13 A1EJX sing 50 n n C33 H14 A1EJX sing 51 n n C33 H15 A1EJX sing 52 n n N20 H16 A1EJX sing 53 n n N20 H17 A1EJX sing 54 n n N21 H18 A1EJX sing 55 n n N3 H19 A1EJX sing 56 n n # _atom_sites.entry_id 9LID _atom_sites.fract_transf_matrix[1][1] 0.019808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007339 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1EJX A 1 401 401 A1EJX L0R . D 3 SO4 A 1 402 2 SO4 SO4 . E 3 SO4 A 1 403 3 SO4 SO4 . F 3 SO4 A 1 404 5 SO4 SO4 . G 3 SO4 A 1 405 8 SO4 SO4 . H 3 SO4 A 1 406 9 SO4 SO4 . I 3 SO4 A 1 407 10 SO4 SO4 . J 2 A1EJX B 1 401 401 A1EJX L0R . K 3 SO4 B 1 402 1 SO4 SO4 . L 3 SO4 B 1 403 4 SO4 SO4 . M 3 SO4 B 1 404 6 SO4 SO4 . N 3 SO4 B 1 405 7 SO4 SO4 . O 4 HOH A 1 501 86 HOH HOH . O 4 HOH A 2 502 76 HOH HOH . O 4 HOH A 3 503 40 HOH HOH . O 4 HOH A 4 504 47 HOH HOH . O 4 HOH A 5 505 27 HOH HOH . O 4 HOH A 6 506 71 HOH HOH . O 4 HOH A 7 507 58 HOH HOH . O 4 HOH A 8 508 66 HOH HOH . O 4 HOH A 9 509 72 HOH HOH . O 4 HOH A 10 510 79 HOH HOH . O 4 HOH A 11 511 85 HOH HOH . O 4 HOH A 12 512 96 HOH HOH . O 4 HOH A 13 513 36 HOH HOH . O 4 HOH A 14 514 49 HOH HOH . O 4 HOH A 15 515 95 HOH HOH . O 4 HOH A 16 516 34 HOH HOH . O 4 HOH A 17 517 1 HOH HOH . O 4 HOH A 18 518 21 HOH HOH . O 4 HOH A 19 519 23 HOH HOH . O 4 HOH A 20 520 7 HOH HOH . O 4 HOH A 21 521 3 HOH HOH . O 4 HOH A 22 522 97 HOH HOH . O 4 HOH A 23 523 100 HOH HOH . O 4 HOH A 24 524 103 HOH HOH . O 4 HOH A 25 525 12 HOH HOH . O 4 HOH A 26 526 16 HOH HOH . O 4 HOH A 27 527 78 HOH HOH . O 4 HOH A 28 528 2 HOH HOH . O 4 HOH A 29 529 99 HOH HOH . O 4 HOH A 30 530 108 HOH HOH . O 4 HOH A 31 531 44 HOH HOH . O 4 HOH A 32 532 88 HOH HOH . O 4 HOH A 33 533 32 HOH HOH . O 4 HOH A 34 534 26 HOH HOH . O 4 HOH A 35 535 70 HOH HOH . O 4 HOH A 36 536 57 HOH HOH . O 4 HOH A 37 537 29 HOH HOH . O 4 HOH A 38 538 112 HOH HOH . O 4 HOH A 39 539 77 HOH HOH . O 4 HOH A 40 540 33 HOH HOH . O 4 HOH A 41 541 41 HOH HOH . O 4 HOH A 42 542 42 HOH HOH . O 4 HOH A 43 543 28 HOH HOH . O 4 HOH A 44 544 67 HOH HOH . O 4 HOH A 45 545 101 HOH HOH . O 4 HOH A 46 546 87 HOH HOH . O 4 HOH A 47 547 89 HOH HOH . P 4 HOH B 1 501 110 HOH HOH . P 4 HOH B 2 502 37 HOH HOH . P 4 HOH B 3 503 104 HOH HOH . P 4 HOH B 4 504 45 HOH HOH . P 4 HOH B 5 505 17 HOH HOH . P 4 HOH B 6 506 30 HOH HOH . P 4 HOH B 7 507 14 HOH HOH . P 4 HOH B 8 508 50 HOH HOH . P 4 HOH B 9 509 107 HOH HOH . P 4 HOH B 10 510 62 HOH HOH . P 4 HOH B 11 511 35 HOH HOH . P 4 HOH B 12 512 8 HOH HOH . P 4 HOH B 13 513 18 HOH HOH . P 4 HOH B 14 514 19 HOH HOH . P 4 HOH B 15 515 39 HOH HOH . P 4 HOH B 16 516 69 HOH HOH . P 4 HOH B 17 517 111 HOH HOH . P 4 HOH B 18 518 6 HOH HOH . P 4 HOH B 19 519 105 HOH HOH . P 4 HOH B 20 520 25 HOH HOH . P 4 HOH B 21 521 56 HOH HOH . P 4 HOH B 22 522 75 HOH HOH . P 4 HOH B 23 523 20 HOH HOH . P 4 HOH B 24 524 11 HOH HOH . P 4 HOH B 25 525 48 HOH HOH . P 4 HOH B 26 526 74 HOH HOH . P 4 HOH B 27 527 31 HOH HOH . P 4 HOH B 28 528 61 HOH HOH . P 4 HOH B 29 529 55 HOH HOH . P 4 HOH B 30 530 83 HOH HOH . P 4 HOH B 31 531 4 HOH HOH . P 4 HOH B 32 532 10 HOH HOH . P 4 HOH B 33 533 51 HOH HOH . P 4 HOH B 34 534 60 HOH HOH . P 4 HOH B 35 535 24 HOH HOH . P 4 HOH B 36 536 73 HOH HOH . P 4 HOH B 37 537 52 HOH HOH . P 4 HOH B 38 538 98 HOH HOH . P 4 HOH B 39 539 63 HOH HOH . P 4 HOH B 40 540 15 HOH HOH . P 4 HOH B 41 541 53 HOH HOH . P 4 HOH B 42 542 64 HOH HOH . P 4 HOH B 43 543 46 HOH HOH . P 4 HOH B 44 544 92 HOH HOH . P 4 HOH B 45 545 106 HOH HOH . P 4 HOH B 46 546 5 HOH HOH . P 4 HOH B 47 547 80 HOH HOH . P 4 HOH B 48 548 54 HOH HOH . P 4 HOH B 49 549 109 HOH HOH . P 4 HOH B 50 550 13 HOH HOH . P 4 HOH B 51 551 81 HOH HOH . P 4 HOH B 52 552 82 HOH HOH . P 4 HOH B 53 553 65 HOH HOH . P 4 HOH B 54 554 94 HOH HOH . P 4 HOH B 55 555 113 HOH HOH . P 4 HOH B 56 556 59 HOH HOH . P 4 HOH B 57 557 90 HOH HOH . P 4 HOH B 58 558 91 HOH HOH . P 4 HOH B 59 559 43 HOH HOH . P 4 HOH B 60 560 9 HOH HOH . P 4 HOH B 61 561 38 HOH HOH . P 4 HOH B 62 562 68 HOH HOH . P 4 HOH B 63 563 93 HOH HOH . P 4 HOH B 64 564 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1EJX . . . C 2 9.522 13.339 28.602 1 50.15 ? C10 A1EJX 401 A 1 HETATM 2 C C11 A1EJX . . . C 2 8.965 14.468 28.03 1 50.85 ? C11 A1EJX 401 A 1 HETATM 3 C C13 A1EJX . . . C 2 5.911 17.352 26.176 1 50.06 ? C13 A1EJX 401 A 1 HETATM 4 C C15 A1EJX . . . C 2 4.644 17.807 26.524 1 50.16 ? C15 A1EJX 401 A 1 HETATM 5 C C16 A1EJX . . . C 2 4.374 15.823 27.809 1 49.16 ? C16 A1EJX 401 A 1 HETATM 6 C C17 A1EJX . . . C 2 3.853 17.038 27.378 1 48.58 ? C17 A1EJX 401 A 1 HETATM 7 C C19 A1EJX . . . C 2 2.479 17.475 27.736 1 56.46 ? C19 A1EJX 401 A 1 HETATM 8 C C22 A1EJX . . . C 2 7.527 12.671 24.986 1 46.54 ? C22 A1EJX 401 A 1 HETATM 9 C C24 A1EJX . . . C 2 1.763 16.854 28.758 1 64.59 ? C24 A1EJX 401 A 1 HETATM 10 C C25 A1EJX . . . C 2 0.468 17.238 29.063 1 64.46 ? C25 A1EJX 401 A 1 HETATM 11 C C26 A1EJX . . . C 2 -0.153 18.267 28.358 1 64.94 ? C26 A1EJX 401 A 1 HETATM 12 C C27 A1EJX . . . C 2 0.547 18.868 27.318 1 63.44 ? C27 A1EJX 401 A 1 HETATM 13 C C28 A1EJX . . . C 2 1.839 18.48 27.016 1 54.27 ? C28 A1EJX 401 A 1 HETATM 14 C C1 A1EJX . . . C 2 7.924 17.696 24.83 1 52.53 ? C1 A1EJX 401 A 1 HETATM 15 C C2 A1EJX . . . C 2 8.419 16.449 25.383 1 52.46 ? C2 A1EJX 401 A 1 HETATM 16 C C29 A1EJX . . . C 2 -1.555 18.716 28.62 1 70.61 ? C29 A1EJX 401 A 1 HETATM 17 C C32 A1EJX . . . C 2 -3.171 19.901 29.989 1 70.36 ? C32 A1EJX 401 A 1 HETATM 18 C C33 A1EJX . . . C 2 -0.826 19.823 30.723 1 70.6 ? C33 A1EJX 401 A 1 HETATM 19 C C4 A1EJX . . . C 2 7.7 15.671 26.287 1 50.35 ? C4 A1EJX 401 A 1 HETATM 20 C C5 A1EJX . . . C 2 6.363 16.118 26.69 1 48.32 ? C5 A1EJX 401 A 1 HETATM 21 C C6 A1EJX . . . C 2 8.262 14.395 26.828 1 48.28 ? C6 A1EJX 401 A 1 HETATM 22 C C7 A1EJX . . . C 2 8.129 13.154 26.172 1 49.93 ? C7 A1EJX 401 A 1 HETATM 23 C C8 A1EJX . . . C 2 8.701 12.011 26.759 1 53.48 ? C8 A1EJX 401 A 1 HETATM 24 C C9 A1EJX . . . C 2 9.381 12.136 27.957 1 54.72 ? C9 A1EJX 401 A 1 HETATM 25 F F12 A1EJX . . . C 2 9.925 11.025 28.499 1 53.11 ? F12 A1EJX 401 A 1 HETATM 26 N N14 A1EJX . . . C 2 5.591 15.364 27.49 1 51.6 ? N14 A1EJX 401 A 1 HETATM 27 N N20 A1EJX . . . C 2 9.648 16.088 24.965 1 54.9 ? N20 A1EJX 401 A 1 HETATM 28 N N21 A1EJX . . . C 2 8.422 10.97 25.939 1 46.26 ? N21 A1EJX 401 A 1 HETATM 29 N N23 A1EJX . . . C 2 7.705 11.371 24.848 1 46.13 ? N23 A1EJX 401 A 1 HETATM 30 N N3 A1EJX . . . C 2 6.735 18.107 25.34 1 49.19 ? N3 A1EJX 401 A 1 HETATM 31 N N30 A1EJX . . . C 2 -1.811 19.44 29.719 1 72.91 ? N30 A1EJX 401 A 1 HETATM 32 O O18 A1EJX . . . C 2 8.515 18.365 23.981 1 53.08 ? O18 A1EJX 401 A 1 HETATM 33 O O31 A1EJX . . . C 2 -2.422 18.435 27.81 1 69.7 ? O31 A1EJX 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #