data_9LJR # _model_server_result.job_id k4IvuoRtXmiyZzjiOFWuzw _model_server_result.datetime_utc '2025-08-14 21:27:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ljr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 9LJR # _exptl.entry_id 9LJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9LJR _cell.length_a 138.876 _cell.length_b 138.876 _cell.length_c 93.227 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 221 A ASP 220 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc2 A OD1 ASP 221 A ASP 220 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc3 A O THR 222 A THR 221 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 A OD2 ASP 319 A ASP 318 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc5 A OD1 ASP 319 A ASP 318 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc6 A OD1 ASP 320 A ASP 319 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 C O1B CDP . A CDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 C O2A CDP . A CDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 C O2A CDP . A CDP 601 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 D O3B FAD . A FAD 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc11 E MN MN . A MN 603 1_555 G O HOH . A HOH 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9LJR _atom_sites.fract_transf_matrix[1][1] 0.007201 _atom_sites.fract_transf_matrix[1][2] 0.004157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CDP A 1 601 601 CDP CDP . D 4 FAD A 1 602 602 FAD FAD . E 5 MN A 1 603 1 MN MN . F 5 MN A 1 604 2 MN MN . G 6 HOH A 1 701 61 HOH HOH . G 6 HOH A 2 702 13 HOH HOH . G 6 HOH A 3 703 4 HOH HOH . G 6 HOH A 4 704 25 HOH HOH . G 6 HOH A 5 705 95 HOH HOH . G 6 HOH A 6 706 11 HOH HOH . G 6 HOH A 7 707 96 HOH HOH . G 6 HOH A 8 708 66 HOH HOH . G 6 HOH A 9 709 6 HOH HOH . G 6 HOH A 10 710 103 HOH HOH . G 6 HOH A 11 711 129 HOH HOH . G 6 HOH A 12 712 126 HOH HOH . G 6 HOH A 13 713 89 HOH HOH . G 6 HOH A 14 714 23 HOH HOH . G 6 HOH A 15 715 8 HOH HOH . G 6 HOH A 16 716 130 HOH HOH . G 6 HOH A 17 717 15 HOH HOH . G 6 HOH A 18 718 86 HOH HOH . G 6 HOH A 19 719 45 HOH HOH . G 6 HOH A 20 720 36 HOH HOH . G 6 HOH A 21 721 76 HOH HOH . G 6 HOH A 22 722 26 HOH HOH . G 6 HOH A 23 723 33 HOH HOH . G 6 HOH A 24 724 2 HOH HOH . G 6 HOH A 25 725 75 HOH HOH . G 6 HOH A 26 726 39 HOH HOH . G 6 HOH A 27 727 91 HOH HOH . G 6 HOH A 28 728 87 HOH HOH . G 6 HOH A 29 729 55 HOH HOH . G 6 HOH A 30 730 78 HOH HOH . G 6 HOH A 31 731 5 HOH HOH . G 6 HOH A 32 732 54 HOH HOH . G 6 HOH A 33 733 35 HOH HOH . G 6 HOH A 34 734 7 HOH HOH . G 6 HOH A 35 735 111 HOH HOH . G 6 HOH A 36 736 3 HOH HOH . G 6 HOH A 37 737 28 HOH HOH . G 6 HOH A 38 738 16 HOH HOH . G 6 HOH A 39 739 80 HOH HOH . G 6 HOH A 40 740 62 HOH HOH . G 6 HOH A 41 741 110 HOH HOH . G 6 HOH A 42 742 1 HOH HOH . G 6 HOH A 43 743 79 HOH HOH . G 6 HOH A 44 744 64 HOH HOH . G 6 HOH A 45 745 108 HOH HOH . G 6 HOH A 46 746 27 HOH HOH . G 6 HOH A 47 747 84 HOH HOH . G 6 HOH A 48 748 115 HOH HOH . G 6 HOH A 49 749 72 HOH HOH . G 6 HOH A 50 750 31 HOH HOH . G 6 HOH A 51 751 48 HOH HOH . G 6 HOH A 52 752 46 HOH HOH . G 6 HOH A 53 753 56 HOH HOH . G 6 HOH A 54 754 43 HOH HOH . G 6 HOH A 55 755 44 HOH HOH . G 6 HOH A 56 756 90 HOH HOH . G 6 HOH A 57 757 9 HOH HOH . G 6 HOH A 58 758 12 HOH HOH . G 6 HOH A 59 759 42 HOH HOH . G 6 HOH A 60 760 49 HOH HOH . G 6 HOH A 61 761 32 HOH HOH . G 6 HOH A 62 762 98 HOH HOH . G 6 HOH A 63 763 63 HOH HOH . G 6 HOH A 64 764 21 HOH HOH . G 6 HOH A 65 765 53 HOH HOH . G 6 HOH A 66 766 29 HOH HOH . G 6 HOH A 67 767 114 HOH HOH . G 6 HOH A 68 768 22 HOH HOH . G 6 HOH A 69 769 58 HOH HOH . G 6 HOH A 70 770 38 HOH HOH . G 6 HOH A 71 771 41 HOH HOH . G 6 HOH A 72 772 52 HOH HOH . G 6 HOH A 73 773 83 HOH HOH . G 6 HOH A 74 774 60 HOH HOH . G 6 HOH A 75 775 17 HOH HOH . G 6 HOH A 76 776 77 HOH HOH . G 6 HOH A 77 777 30 HOH HOH . G 6 HOH A 78 778 19 HOH HOH . G 6 HOH A 79 779 37 HOH HOH . G 6 HOH A 80 780 67 HOH HOH . G 6 HOH A 81 781 107 HOH HOH . G 6 HOH A 82 782 101 HOH HOH . G 6 HOH A 83 783 85 HOH HOH . G 6 HOH A 84 784 40 HOH HOH . G 6 HOH A 85 785 69 HOH HOH . G 6 HOH A 86 786 99 HOH HOH . G 6 HOH A 87 787 20 HOH HOH . G 6 HOH A 88 788 112 HOH HOH . G 6 HOH A 89 789 102 HOH HOH . G 6 HOH A 90 790 82 HOH HOH . G 6 HOH A 91 791 128 HOH HOH . G 6 HOH A 92 792 24 HOH HOH . G 6 HOH A 93 793 34 HOH HOH . G 6 HOH A 94 794 47 HOH HOH . G 6 HOH A 95 795 14 HOH HOH . G 6 HOH A 96 796 57 HOH HOH . G 6 HOH A 97 797 94 HOH HOH . G 6 HOH A 98 798 117 HOH HOH . G 6 HOH A 99 799 93 HOH HOH . G 6 HOH A 100 800 68 HOH HOH . G 6 HOH A 101 801 50 HOH HOH . G 6 HOH A 102 802 59 HOH HOH . G 6 HOH A 103 803 105 HOH HOH . G 6 HOH A 104 804 113 HOH HOH . G 6 HOH A 105 805 65 HOH HOH . G 6 HOH A 106 806 127 HOH HOH . G 6 HOH A 107 807 104 HOH HOH . G 6 HOH A 108 808 70 HOH HOH . G 6 HOH A 109 809 97 HOH HOH . G 6 HOH A 110 810 106 HOH HOH . G 6 HOH A 111 811 88 HOH HOH . G 6 HOH A 112 812 92 HOH HOH . G 6 HOH A 113 813 73 HOH HOH . G 6 HOH A 114 814 74 HOH HOH . G 6 HOH A 115 815 100 HOH HOH . G 6 HOH A 116 816 109 HOH HOH . H 6 HOH T 1 101 71 HOH HOH . H 6 HOH T 2 102 51 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 45.369 _atom_site.Cartn_y -45.978 _atom_site.Cartn_z 2.808 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #