data_9LJS # _model_server_result.job_id 8U3g-GWnez9a0vCvv6u4OA _model_server_result.datetime_utc '2025-08-15 02:53:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ljs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 9LJS # _exptl.entry_id 9LJS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9LJS _cell.length_a 139.003 _cell.length_b 139.003 _cell.length_c 92.986 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 221 A ASP 220 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 A OD1 ASP 221 A ASP 220 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A O THR 222 A THR 221 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A OD1 ASP 319 A ASP 318 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc5 A OD2 ASP 319 A ASP 318 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 D O2A CDP . A CDP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 D O2B CDP . A CDP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 D O2A CDP . A CDP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc9 F MN MN . A MN 604 1_555 G O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 124 n n PA O2A FAD sing 125 n n PA O5B FAD sing 126 n n PA O3P FAD sing 127 n n O2A HOA2 FAD sing 128 n n O5B C5B FAD sing 129 n n C5B C4B FAD sing 130 n n C5B H51A FAD sing 131 n n C5B H52A FAD sing 132 n n C4B O4B FAD sing 133 n n C4B C3B FAD sing 134 n n C4B H4B FAD sing 135 n n O4B C1B FAD sing 136 n n C3B O3B FAD sing 137 n n C3B C2B FAD sing 138 n n C3B H3B FAD sing 139 n n O3B HO3A FAD sing 140 n n C2B O2B FAD sing 141 n n C2B C1B FAD sing 142 n n C2B H2B FAD sing 143 n n O2B HO2A FAD sing 144 n n C1B N9A FAD sing 145 n n C1B H1B FAD sing 146 n n N9A C8A FAD sing 147 n y N9A C4A FAD sing 148 n y C8A N7A FAD doub 149 n y C8A H8A FAD sing 150 n n N7A C5A FAD sing 151 n y C5A C6A FAD sing 152 n y C5A C4A FAD doub 153 n y C6A N6A FAD sing 154 n n C6A N1A FAD doub 155 n y N6A H61A FAD sing 156 n n N6A H62A FAD sing 157 n n N1A C2A FAD sing 158 n y C2A N3A FAD doub 159 n y C2A H2A FAD sing 160 n n N3A C4A FAD sing 161 n y N1 C2 FAD sing 162 n n N1 C10 FAD doub 163 n n C2 O2 FAD doub 164 n n C2 N3 FAD sing 165 n n N3 C4 FAD sing 166 n n N3 HN3 FAD sing 167 n n C4 O4 FAD doub 168 n n C4 C4X FAD sing 169 n n C4X N5 FAD doub 170 n n C4X C10 FAD sing 171 n n N5 C5X FAD sing 172 n n C5X C6 FAD doub 173 n y C5X C9A FAD sing 174 n y C6 C7 FAD sing 175 n y C6 H6 FAD sing 176 n n C7 C7M FAD sing 177 n n C7 C8 FAD doub 178 n y C7M HM71 FAD sing 179 n n C7M HM72 FAD sing 180 n n C7M HM73 FAD sing 181 n n C8 C8M FAD sing 182 n n C8 C9 FAD sing 183 n y C8M HM81 FAD sing 184 n n C8M HM82 FAD sing 185 n n C8M HM83 FAD sing 186 n n C9 C9A FAD doub 187 n y C9 H9 FAD sing 188 n n C9A N10 FAD sing 189 n n N10 C10 FAD sing 190 n n N10 C1' FAD sing 191 n n C1' C2' FAD sing 192 n n C1' "H1'1" FAD sing 193 n n C1' "H1'2" FAD sing 194 n n C2' O2' FAD sing 195 n n C2' C3' FAD sing 196 n n C2' H2' FAD sing 197 n n O2' HO2' FAD sing 198 n n C3' O3' FAD sing 199 n n C3' C4' FAD sing 200 n n C3' H3' FAD sing 201 n n O3' HO3' FAD sing 202 n n C4' O4' FAD sing 203 n n C4' C5' FAD sing 204 n n C4' H4' FAD sing 205 n n O4' HO4' FAD sing 206 n n C5' O5' FAD sing 207 n n C5' "H5'1" FAD sing 208 n n C5' "H5'2" FAD sing 209 n n O5' P FAD sing 210 n n P O1P FAD doub 211 n n P O2P FAD sing 212 n n P O3P FAD sing 213 n n O2P HOP2 FAD sing 214 n n # _atom_sites.entry_id 9LJS _atom_sites.fract_transf_matrix[1][1] 0.007194 _atom_sites.fract_transf_matrix[1][2] 0.004154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 601 601 FAD FAD . D 4 CDP A 1 602 602 CDP CDP . E 5 MN A 1 603 1 MN MN . F 5 MN A 1 604 2 MN MN . G 6 HOH A 1 701 69 HOH HOH . G 6 HOH A 2 702 5 HOH HOH . G 6 HOH A 3 703 77 HOH HOH . G 6 HOH A 4 704 67 HOH HOH . G 6 HOH A 5 705 27 HOH HOH . G 6 HOH A 6 706 50 HOH HOH . G 6 HOH A 7 707 33 HOH HOH . G 6 HOH A 8 708 39 HOH HOH . G 6 HOH A 9 709 2 HOH HOH . G 6 HOH A 10 710 29 HOH HOH . G 6 HOH A 11 711 9 HOH HOH . G 6 HOH A 12 712 44 HOH HOH . G 6 HOH A 13 713 14 HOH HOH . G 6 HOH A 14 714 48 HOH HOH . G 6 HOH A 15 715 21 HOH HOH . G 6 HOH A 16 716 61 HOH HOH . G 6 HOH A 17 717 15 HOH HOH . G 6 HOH A 18 718 78 HOH HOH . G 6 HOH A 19 719 62 HOH HOH . G 6 HOH A 20 720 16 HOH HOH . G 6 HOH A 21 721 68 HOH HOH . G 6 HOH A 22 722 23 HOH HOH . G 6 HOH A 23 723 53 HOH HOH . G 6 HOH A 24 724 31 HOH HOH . G 6 HOH A 25 725 71 HOH HOH . G 6 HOH A 26 726 35 HOH HOH . G 6 HOH A 27 727 24 HOH HOH . G 6 HOH A 28 728 40 HOH HOH . G 6 HOH A 29 729 30 HOH HOH . G 6 HOH A 30 730 36 HOH HOH . G 6 HOH A 31 731 49 HOH HOH . G 6 HOH A 32 732 65 HOH HOH . G 6 HOH A 33 733 45 HOH HOH . G 6 HOH A 34 734 43 HOH HOH . G 6 HOH A 35 735 32 HOH HOH . G 6 HOH A 36 736 72 HOH HOH . G 6 HOH A 37 737 70 HOH HOH . G 6 HOH A 38 738 66 HOH HOH . G 6 HOH A 39 739 34 HOH HOH . G 6 HOH A 40 740 59 HOH HOH . G 6 HOH A 41 741 47 HOH HOH . G 6 HOH A 42 742 20 HOH HOH . G 6 HOH A 43 743 79 HOH HOH . G 6 HOH A 44 744 58 HOH HOH . G 6 HOH A 45 745 41 HOH HOH . G 6 HOH A 46 746 80 HOH HOH . G 6 HOH A 47 747 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 65.014 -17.622 8.283 1 87.24 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . C 3 63.642 -17.847 7.743 1 65.22 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . C 3 65.248 -18.374 9.628 1 75 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . C 3 65.179 -15.98 8.581 1 78.41 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . C 3 65.695 -15.541 9.773 1 71.5 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . C 3 65.173 -14.112 10.176 1 63.81 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . C 3 65.218 -13.282 9.15 1 64.11 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . C 3 63.699 -14.152 10.583 1 62.21 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . C 3 63.55 -14.397 11.907 1 55.81 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . C 3 63.139 -12.751 10.178 1 62.04 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . C 3 63.327 -11.684 11.252 1 56.28 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . C 3 63.818 -12.45 9.107 1 59.62 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . C 3 63.067 -12.81 7.868 1 56.95 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . C 3 62.841 -14.026 7.373 1 59.5 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . C 3 62.129 -13.916 6.219 1 57.42 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . C 3 61.93 -12.605 6.015 1 59.85 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . C 3 61.28 -11.934 4.997 1 54.64 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . C 3 60.583 -12.373 3.791 1 49.24 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . C 3 61.22 -10.602 5.022 1 56.72 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . C 3 61.795 -9.882 6.03 1 52.08 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . C 3 62.439 -10.549 7.035 1 57.15 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . C 3 62.501 -11.903 7.02 1 61.39 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . C 3 62.318 -13.12 0.103 1 56.21 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . C 3 61.55 -12.885 -1.144 1 62.26 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . C 3 61.163 -13.843 -1.822 1 71.19 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . C 3 61.24 -11.461 -1.577 1 59.06 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . C 3 61.707 -10.356 -0.783 1 54.27 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . C 3 61.496 -9.211 -1.088 1 56.83 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . C 3 62.49 -10.634 0.489 1 46.37 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . C 3 62.954 -9.507 1.274 1 51.31 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . C 3 63.721 -9.742 2.529 1 53.92 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . C 3 64.155 -8.635 3.306 1 52.73 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . C 3 64.875 -8.855 4.485 1 52.55 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . C 3 65.267 -7.538 5.155 1 52.71 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . C 3 65.164 -10.163 4.912 1 54.06 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . C 3 65.954 -10.514 6.19 1 53.3 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . C 3 64.713 -11.258 4.141 1 54.66 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . C 3 63.997 -11.046 2.944 1 53.58 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . C 3 63.505 -12.22 2.11 1 50.7 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . C 3 62.768 -11.987 0.904 1 50.07 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . C 3 63.822 -13.613 2.508 1 56.58 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . C 3 65.32 -13.825 2.299 1 56.94 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . C 3 65.743 -13.661 0.998 1 60.17 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . C 3 65.739 -15.215 2.805 1 56.65 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . C 3 65.048 -16.169 2.089 1 55.97 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . C 3 65.326 -15.289 4.257 1 65.42 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . C 3 66.106 -14.433 5.05 1 66.93 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . C 3 65.48 -16.735 4.745 1 70.26 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . C 3 66.88 -16.945 4.905 1 81.99 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . C 3 67.43 -17.265 6.446 1 82.27 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . C 3 68.754 -18.027 6.345 1 66.24 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . C 3 67.714 -15.911 7.167 1 70.47 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . C 3 66.173 -18.158 7.125 1 76.31 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #