data_9LJT
#
_model_server_result.job_id            F8ZzilZf1T8_VY2gBqhQhw 
_model_server_result.datetime_utc      '2025-08-15 03:05:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ljt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    9LJT 
#
_exptl.entry_id    9LJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9LJT 
_cell.length_a            139.843 
_cell.length_b            139.843 
_cell.length_c            92.651 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9LJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 221 A ASP 220 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A OD1 ASP 221 A ASP 220 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc3 A O THR 222 A THR 221 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc4 A OD1 ASP 319 A ASP 318 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc5 A OD2 ASP 319 A ASP 318 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc6 A OD1 ASP 320 A ASP 319 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc7 C O2A CDP . A CDP 601 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc8 C O1B CDP . A CDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc9 C O2A CDP . A CDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 124 n n 
PA O2A FAD sing 125 n n 
PA O5B FAD sing 126 n n 
PA O3P FAD sing 127 n n 
O2A HOA2 FAD sing 128 n n 
O5B C5B FAD sing 129 n n 
C5B C4B FAD sing 130 n n 
C5B H51A FAD sing 131 n n 
C5B H52A FAD sing 132 n n 
C4B O4B FAD sing 133 n n 
C4B C3B FAD sing 134 n n 
C4B H4B FAD sing 135 n n 
O4B C1B FAD sing 136 n n 
C3B O3B FAD sing 137 n n 
C3B C2B FAD sing 138 n n 
C3B H3B FAD sing 139 n n 
O3B HO3A FAD sing 140 n n 
C2B O2B FAD sing 141 n n 
C2B C1B FAD sing 142 n n 
C2B H2B FAD sing 143 n n 
O2B HO2A FAD sing 144 n n 
C1B N9A FAD sing 145 n n 
C1B H1B FAD sing 146 n n 
N9A C8A FAD sing 147 n y 
N9A C4A FAD sing 148 n y 
C8A N7A FAD doub 149 n y 
C8A H8A FAD sing 150 n n 
N7A C5A FAD sing 151 n y 
C5A C6A FAD sing 152 n y 
C5A C4A FAD doub 153 n y 
C6A N6A FAD sing 154 n n 
C6A N1A FAD doub 155 n y 
N6A H61A FAD sing 156 n n 
N6A H62A FAD sing 157 n n 
N1A C2A FAD sing 158 n y 
C2A N3A FAD doub 159 n y 
C2A H2A FAD sing 160 n n 
N3A C4A FAD sing 161 n y 
N1 C2 FAD sing 162 n n 
N1 C10 FAD doub 163 n n 
C2 O2 FAD doub 164 n n 
C2 N3 FAD sing 165 n n 
N3 C4 FAD sing 166 n n 
N3 HN3 FAD sing 167 n n 
C4 O4 FAD doub 168 n n 
C4 C4X FAD sing 169 n n 
C4X N5 FAD doub 170 n n 
C4X C10 FAD sing 171 n n 
N5 C5X FAD sing 172 n n 
C5X C6 FAD doub 173 n y 
C5X C9A FAD sing 174 n y 
C6 C7 FAD sing 175 n y 
C6 H6 FAD sing 176 n n 
C7 C7M FAD sing 177 n n 
C7 C8 FAD doub 178 n y 
C7M HM71 FAD sing 179 n n 
C7M HM72 FAD sing 180 n n 
C7M HM73 FAD sing 181 n n 
C8 C8M FAD sing 182 n n 
C8 C9 FAD sing 183 n y 
C8M HM81 FAD sing 184 n n 
C8M HM82 FAD sing 185 n n 
C8M HM83 FAD sing 186 n n 
C9 C9A FAD doub 187 n y 
C9 H9 FAD sing 188 n n 
C9A N10 FAD sing 189 n n 
N10 C10 FAD sing 190 n n 
N10 C1' FAD sing 191 n n 
C1' C2' FAD sing 192 n n 
C1' "H1'1" FAD sing 193 n n 
C1' "H1'2" FAD sing 194 n n 
C2' O2' FAD sing 195 n n 
C2' C3' FAD sing 196 n n 
C2' H2' FAD sing 197 n n 
O2' HO2' FAD sing 198 n n 
C3' O3' FAD sing 199 n n 
C3' C4' FAD sing 200 n n 
C3' H3' FAD sing 201 n n 
O3' HO3' FAD sing 202 n n 
C4' O4' FAD sing 203 n n 
C4' C5' FAD sing 204 n n 
C4' H4' FAD sing 205 n n 
O4' HO4' FAD sing 206 n n 
C5' O5' FAD sing 207 n n 
C5' "H5'1" FAD sing 208 n n 
C5' "H5'2" FAD sing 209 n n 
O5' P FAD sing 210 n n 
P O1P FAD doub 211 n n 
P O2P FAD sing 212 n n 
P O3P FAD sing 213 n n 
O2P HOP2 FAD sing 214 n n 
#
_atom_sites.entry_id                     9LJT 
_atom_sites.fract_transf_matrix[1][1]    0.007151 
_atom_sites.fract_transf_matrix[1][2]    0.004129 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CDP A 1 601 602 CDP CDP . 
D 4 MN A 1 602 1 MN MN . 
E 4 MN A 1 603 2 MN MN . 
F 5 FAD T 1 601 601 FAD FAD . 
G 6 HOH A 1 701 33 HOH HOH . 
G 6 HOH A 2 702 64 HOH HOH . 
G 6 HOH A 3 703 29 HOH HOH . 
G 6 HOH A 4 704 86 HOH HOH . 
G 6 HOH A 5 705 34 HOH HOH . 
G 6 HOH A 6 706 10 HOH HOH . 
G 6 HOH A 7 707 106 HOH HOH . 
G 6 HOH A 8 708 14 HOH HOH . 
G 6 HOH A 9 709 43 HOH HOH . 
G 6 HOH A 10 710 126 HOH HOH . 
G 6 HOH A 11 711 109 HOH HOH . 
G 6 HOH A 12 712 5 HOH HOH . 
G 6 HOH A 13 713 76 HOH HOH . 
G 6 HOH A 14 714 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 5 48.351 -47.322 7.993 1 91.37 ? PA FAD 601 T 1 
HETATM 2 O O1A FAD . . . F 5 49.648 -46.636 7.822 1 89.16 ? O1A FAD 601 T 1 
HETATM 3 O O2A FAD . . . F 5 47.445 -46.445 8.869 1 91.79 ? O2A FAD 601 T 1 
HETATM 4 O O5B FAD . . . F 5 47.635 -47.587 6.53 1 90.53 ? O5B FAD 601 T 1 
HETATM 5 C C5B FAD . . . F 5 46.274 -47.61 6.475 1 88.18 ? C5B FAD 601 T 1 
HETATM 6 C C4B FAD . . . F 5 45.815 -49.103 6.391 1 89.84 ? C4B FAD 601 T 1 
HETATM 7 O O4B FAD . . . F 5 45.742 -49.614 7.598 1 91.39 ? O4B FAD 601 T 1 
HETATM 8 C C3B FAD . . . F 5 44.414 -49.201 5.801 1 80.64 ? C3B FAD 601 T 1 
HETATM 9 O O3B FAD . . . F 5 44.258 -50.386 5.16 1 76.67 ? O3B FAD 601 T 1 
HETATM 10 C C2B FAD . . . F 5 43.461 -49.186 7.022 1 90.33 ? C2B FAD 601 T 1 
HETATM 11 O O2B FAD . . . F 5 42.396 -50.247 6.804 1 80.11 ? O2B FAD 601 T 1 
HETATM 12 C C1B FAD . . . F 5 44.196 -49.474 8.068 1 91.64 ? C1B FAD 601 T 1 
HETATM 13 N N9A FAD . . . F 5 44.054 -48.487 9.2 1 85.04 ? N9A FAD 601 T 1 
HETATM 14 C C8A FAD . . . F 5 44.963 -47.641 9.681 1 84.72 ? C8A FAD 601 T 1 
HETATM 15 N N7A FAD . . . F 5 44.427 -46.938 10.718 1 81.53 ? N7A FAD 601 T 1 
HETATM 16 C C5A FAD . . . F 5 43.166 -47.375 10.864 1 79.3 ? C5A FAD 601 T 1 
HETATM 17 C C6A FAD . . . F 5 42.172 -47.014 11.757 1 74.22 ? C6A FAD 601 T 1 
HETATM 18 N N6A FAD . . . F 5 42.072 -46.055 12.856 1 68.02 ? N6A FAD 601 T 1 
HETATM 19 N N1A FAD . . . F 5 40.987 -47.609 11.686 1 75.38 ? N1A FAD 601 T 1 
HETATM 20 C C2A FAD . . . F 5 40.745 -48.57 10.747 1 72.28 ? C2A FAD 601 T 1 
HETATM 21 N N3A FAD . . . F 5 41.718 -48.938 9.868 1 69.16 ? N3A FAD 601 T 1 
HETATM 22 C C4A FAD . . . F 5 42.919 -48.332 9.938 1 78.49 ? C4A FAD 601 T 1 
HETATM 23 N N1 FAD . . . F 5 43.497 -47.929 16.096 1 78.02 ? N1 FAD 601 T 1 
HETATM 24 C C2 FAD . . . F 5 43.004 -47.254 17.321 1 81.11 ? C2 FAD 601 T 1 
HETATM 25 O O2 FAD . . . F 5 43.741 -46.493 17.95 1 92.03 ? O2 FAD 601 T 1 
HETATM 26 N N3 FAD . . . F 5 41.592 -47.492 17.807 1 69.56 ? N3 FAD 601 T 1 
HETATM 27 C C4 FAD . . . F 5 40.756 -48.381 17.064 1 72.74 ? C4 FAD 601 T 1 
HETATM 28 O O4 FAD . . . F 5 39.637 -48.592 17.416 1 76.77 ? O4 FAD 601 T 1 
HETATM 29 C C4X FAD . . . F 5 41.283 -49.07 15.807 1 68.6 ? C4X FAD 601 T 1 
HETATM 30 N N5 FAD . . . F 5 40.395 -49.963 15.084 1 65.04 ? N5 FAD 601 T 1 
HETATM 31 C C5X FAD . . . F 5 40.898 -50.627 13.861 1 65.93 ? C5X FAD 601 T 1 
HETATM 32 C C6 FAD . . . F 5 40.031 -51.495 13.16 1 66.96 ? C6 FAD 601 T 1 
HETATM 33 C C7 FAD . . . F 5 40.486 -52.132 12.002 1 65.01 ? C7 FAD 601 T 1 
HETATM 34 C C7M FAD . . . F 5 39.411 -53.037 11.376 1 51.94 ? C7M FAD 601 T 1 
HETATM 35 C C8 FAD . . . F 5 41.797 -51.901 11.551 1 70.87 ? C8 FAD 601 T 1 
HETATM 36 C C8M FAD . . . F 5 42.378 -52.564 10.288 1 69.69 ? C8M FAD 601 T 1 
HETATM 37 C C9 FAD . . . F 5 42.666 -51.03 12.256 1 72.86 ? C9 FAD 601 T 1 
HETATM 38 C C9A FAD . . . F 5 42.202 -50.394 13.414 1 68.97 ? C9A FAD 601 T 1 
HETATM 39 N N10 FAD . . . F 5 43.125 -49.457 14.169 1 68.53 ? N10 FAD 601 T 1 
HETATM 40 C C10 FAD . . . F 5 42.632 -48.825 15.35 1 68.85 ? C10 FAD 601 T 1 
HETATM 41 C C1' FAD . . . F 5 44.521 -49.211 13.716 1 74.37 ? C1' FAD 601 T 1 
HETATM 42 C C2' FAD . . . F 5 45.405 -50.273 14.322 1 77.01 ? C2' FAD 601 T 1 
HETATM 43 O O2' FAD . . . F 5 45.628 -50.012 15.649 1 79.34 ? O2' FAD 601 T 1 
HETATM 44 C C3' FAD . . . F 5 46.78 -50.325 13.625 1 80.08 ? C3' FAD 601 T 1 
HETATM 45 O O3' FAD . . . F 5 47.442 -49.122 13.825 1 80.17 ? O3' FAD 601 T 1 
HETATM 46 C C4' FAD . . . F 5 46.581 -50.699 12.161 1 87.72 ? C4' FAD 601 T 1 
HETATM 47 O O4' FAD . . . F 5 47.165 -51.94 11.893 1 93.93 ? O4' FAD 601 T 1 
HETATM 48 C C5' FAD . . . F 5 47.224 -49.687 11.209 1 92.55 ? C5' FAD 601 T 1 
HETATM 49 O O5' FAD . . . F 5 48.627 -49.918 11.109 1 100.12 ? O5' FAD 601 T 1 
HETATM 50 P P FAD . . . F 5 49.417 -48.743 10.231 1 99.41 ? P FAD 601 T 1 
HETATM 51 O O1P FAD . . . F 5 50.91 -49.061 10.099 1 89.99 ? O1P FAD 601 T 1 
HETATM 52 O O2P FAD . . . F 5 49.206 -47.347 10.892 1 81.53 ? O2P FAD 601 T 1 
HETATM 53 O O3P FAD . . . F 5 48.661 -48.783 8.764 1 88.63 ? O3P FAD 601 T 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           53 
#