data_9LJU # _model_server_result.job_id ZYkuNX-DO8_gVQuI-COj_Q _model_server_result.datetime_utc '2025-08-15 07:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9lju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 9LJU # _exptl.entry_id 9LJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9LJU _cell.length_a 139.313 _cell.length_b 139.313 _cell.length_c 93.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 221 A ASP 220 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A OD1 ASP 221 A ASP 220 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A O THR 222 A THR 221 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 A OD2 ASP 319 A ASP 318 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 A OD1 ASP 319 A ASP 318 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc6 A OD1 ASP 320 A ASP 319 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc7 D O1B GDP . A GDP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc8 D O3A GDP . A GDP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 D O1A GDP . A GDP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9LJU _atom_sites.fract_transf_matrix[1][1] 0.007178 _atom_sites.fract_transf_matrix[1][2] 0.004144 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 601 604 FAD FAD . D 4 GDP A 1 602 603 GDP GDP . E 5 MN A 1 603 3 MN MN . F 5 MN A 1 604 4 MN MN . G 6 HOH A 1 701 19 HOH HOH . G 6 HOH A 2 702 21 HOH HOH . G 6 HOH A 3 703 5 HOH HOH . G 6 HOH A 4 704 75 HOH HOH . G 6 HOH A 5 705 45 HOH HOH . G 6 HOH A 6 706 35 HOH HOH . G 6 HOH A 7 707 11 HOH HOH . G 6 HOH A 8 708 95 HOH HOH . G 6 HOH A 9 709 74 HOH HOH . G 6 HOH A 10 710 7 HOH HOH . G 6 HOH A 11 711 53 HOH HOH . G 6 HOH A 12 712 3 HOH HOH . G 6 HOH A 13 713 62 HOH HOH . G 6 HOH A 14 714 54 HOH HOH . G 6 HOH A 15 715 39 HOH HOH . G 6 HOH A 16 716 2 HOH HOH . G 6 HOH A 17 717 32 HOH HOH . G 6 HOH A 18 718 1 HOH HOH . G 6 HOH A 19 719 78 HOH HOH . G 6 HOH A 20 720 23 HOH HOH . G 6 HOH A 21 721 68 HOH HOH . G 6 HOH A 22 722 24 HOH HOH . G 6 HOH A 23 723 6 HOH HOH . G 6 HOH A 24 724 10 HOH HOH . G 6 HOH A 25 725 18 HOH HOH . G 6 HOH A 26 726 37 HOH HOH . G 6 HOH A 27 727 94 HOH HOH . G 6 HOH A 28 728 28 HOH HOH . G 6 HOH A 29 729 96 HOH HOH . G 6 HOH A 30 730 38 HOH HOH . G 6 HOH A 31 731 63 HOH HOH . G 6 HOH A 32 732 46 HOH HOH . G 6 HOH A 33 733 56 HOH HOH . G 6 HOH A 34 734 41 HOH HOH . G 6 HOH A 35 735 42 HOH HOH . G 6 HOH A 36 736 20 HOH HOH . G 6 HOH A 37 737 57 HOH HOH . G 6 HOH A 38 738 73 HOH HOH . G 6 HOH A 39 739 72 HOH HOH . G 6 HOH A 40 740 80 HOH HOH . G 6 HOH A 41 741 49 HOH HOH . G 6 HOH A 42 742 70 HOH HOH . G 6 HOH A 43 743 44 HOH HOH . G 6 HOH A 44 744 40 HOH HOH . G 6 HOH A 45 745 82 HOH HOH . G 6 HOH A 46 746 67 HOH HOH . G 6 HOH A 47 747 65 HOH HOH . G 6 HOH A 48 748 69 HOH HOH . G 6 HOH A 49 749 66 HOH HOH . G 6 HOH A 50 750 47 HOH HOH . G 6 HOH A 51 751 92 HOH HOH . G 6 HOH A 52 752 51 HOH HOH . G 6 HOH A 53 753 91 HOH HOH . G 6 HOH A 54 754 79 HOH HOH . G 6 HOH A 55 755 81 HOH HOH . G 6 HOH A 56 756 64 HOH HOH . G 6 HOH A 57 757 83 HOH HOH . G 6 HOH A 58 758 71 HOH HOH . H 6 HOH T 1 101 85 HOH HOH . H 6 HOH T 2 102 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 59.919 _atom_site.Cartn_y -15.751 _atom_site.Cartn_z 30.809 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #