data_9LRJ
#
_model_server_result.job_id            oakGzxriVwlCXUDTNYSRqA 
_model_server_result.datetime_utc      '2025-02-22 18:22:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9lrj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    9LRJ 
#
_exptl.entry_id    9LRJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.293 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.35 
_cell.angle_gamma         90 
_cell.entry_id            9LRJ 
_cell.length_a            87.716 
_cell.length_b            171.782 
_cell.length_c            153.378 
_cell.Z_PDB               14 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9LRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I 1 1 
B,J,K 2 1 
C,L,M 3 1 
D,N,O 4 1 
E,P 5 1 
F,Q,R 6 1 
G,S 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
#
_chem_comp.formula           'C15 H23 F N2 O16 P2' 
_chem_comp.formula_weight    568.293 
_chem_comp.id                U2F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 U2F sing 379 n n 
C1 C2 U2F sing 380 n n 
C1 O5 U2F sing 381 n n 
C1 H1 U2F sing 382 n n 
O1 PB U2F sing 383 n n 
PB O1B U2F doub 384 n n 
PB O2B U2F sing 385 n n 
PB O3A U2F sing 386 n n 
O3A PA U2F sing 387 n n 
PA O1A U2F doub 388 n n 
PA O2A U2F sing 389 n n 
PA O5' U2F sing 390 n n 
O5' C5' U2F sing 391 n n 
C5' C4' U2F sing 392 n n 
C5' "H5'1" U2F sing 393 n n 
C5' "H5'2" U2F sing 394 n n 
C4' O4' U2F sing 395 n n 
C4' C3' U2F sing 396 n n 
C4' H4' U2F sing 397 n n 
O4' C1' U2F sing 398 n n 
C1' C2' U2F sing 399 n n 
C1' N1 U2F sing 400 n n 
C1' H1' U2F sing 401 n n 
C2' C3' U2F sing 402 n n 
C2' O2' U2F sing 403 n n 
C2' H2' U2F sing 404 n n 
C3' O3' U2F sing 405 n n 
C3' H3' U2F sing 406 n n 
O3' HB U2F sing 407 n n 
O2' HA U2F sing 408 n n 
N1 C6' U2F sing 409 n n 
N1 C9' U2F sing 410 n n 
C6' O6' U2F doub 411 n n 
C6' N3 U2F sing 412 n n 
N3 C7' U2F sing 413 n n 
N3 H3 U2F sing 414 n n 
C7' O7' U2F doub 415 n n 
C7' C8' U2F sing 416 n n 
C8' C9' U2F doub 417 n n 
C8' H8' U2F sing 418 n n 
C9' H9' U2F sing 419 n n 
C2 F1 U2F sing 420 n n 
C2 C3 U2F sing 421 n n 
C2 H2 U2F sing 422 n n 
C3 O3 U2F sing 423 n n 
C3 C4 U2F sing 424 n n 
C3 HC U2F sing 425 n n 
O3 HD U2F sing 426 n n 
C4 O4 U2F sing 427 n n 
C4 C5 U2F sing 428 n n 
C4 H4 U2F sing 429 n n 
O4 HE U2F sing 430 n n 
C5 C6 U2F sing 431 n n 
C5 O5 U2F sing 432 n n 
C5 H5 U2F sing 433 n n 
C6 O6 U2F sing 434 n n 
C6 H6C1 U2F sing 435 n n 
C6 H6C2 U2F sing 436 n n 
O6 H6 U2F sing 437 n n 
HO1 O2A U2F sing 438 n n 
HO2 O2B U2F sing 439 n n 
#
_atom_sites.entry_id                     9LRJ 
_atom_sites.fract_transf_matrix[1][1]    0.0114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000667 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006531 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 U2F A 1 501 501 U2F U2F . 
I 3 T83 A 1 502 502 T83 T83 . 
J 2 U2F B 1 501 501 U2F U2F . 
K 3 T83 B 1 502 502 T83 T83 . 
L 2 U2F C 1 501 501 U2F U2F . 
M 3 T83 C 1 502 502 T83 T83 . 
N 2 U2F D 1 501 501 U2F U2F . 
O 3 T83 D 1 502 502 T83 T83 . 
P 2 U2F E 1 501 501 U2F U2F . 
Q 2 U2F F 1 501 501 U2F U2F . 
R 3 T83 F 1 502 502 T83 T83 . 
S 2 U2F G 1 501 501 U2F U2F . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U2F . . . N 2 84.697 79.086 -6.079 1 63.39 ? C1 U2F 501 D 1 
HETATM 2 O O1 U2F . . . N 2 85.351 79.527 -4.879 1 54.94 ? O1 U2F 501 D 1 
HETATM 3 P PB U2F . . . N 2 86.051 78.45 -3.784 1 43.88 ? PB U2F 501 D 1 
HETATM 4 O O1B U2F . . . N 2 87.35 77.917 -4.322 1 40.43 ? O1B U2F 501 D 1 
HETATM 5 O O2B U2F . . . N 2 86.274 79.072 -2.415 1 39.18 ? O2B U2F 501 D 1 
HETATM 6 O O3A U2F . . . N 2 84.972 77.24 -3.641 1 44.87 ? O3A U2F 501 D 1 
HETATM 7 P PA U2F . . . N 2 84.787 76.321 -2.313 1 41.28 ? PA U2F 501 D 1 
HETATM 8 O O1A U2F . . . N 2 83.974 75.149 -2.777 1 35.67 ? O1A U2F 501 D 1 
HETATM 9 O O2A U2F . . . N 2 84.011 77.028 -1.245 1 34.05 ? O2A U2F 501 D 1 
HETATM 10 O O5' U2F . . . N 2 86.329 75.854 -1.859 1 44.34 ? O5' U2F 501 D 1 
HETATM 11 C C5' U2F . . . N 2 86.529 75.141 -0.624 1 46.85 ? C5' U2F 501 D 1 
HETATM 12 C C4' U2F . . . N 2 87.169 73.845 -0.93 1 47.82 ? C4' U2F 501 D 1 
HETATM 13 O O4' U2F . . . N 2 88.627 73.741 -0.141 1 49.96 ? O4' U2F 501 D 1 
HETATM 14 C C1' U2F . . . N 2 88.483 72.996 0.917 1 50.73 ? C1' U2F 501 D 1 
HETATM 15 C C2' U2F . . . N 2 86.909 72.646 0.98 1 49.79 ? C2' U2F 501 D 1 
HETATM 16 C C3' U2F . . . N 2 86.471 72.777 -0.478 1 48.82 ? C3' U2F 501 D 1 
HETATM 17 O O3' U2F . . . N 2 86.87 71.551 -1.216 1 52.84 ? O3' U2F 501 D 1 
HETATM 18 O O2' U2F . . . N 2 86.698 71.417 1.432 1 45.48 ? O2' U2F 501 D 1 
HETATM 19 N N1 U2F . . . N 2 88.95 73.727 2.106 1 51.41 ? N1 U2F 501 D 1 
HETATM 20 C C6' U2F . . . N 2 89.463 73.106 3.158 1 48.8 ? C6' U2F 501 D 1 
HETATM 21 O O6' U2F . . . N 2 89.554 71.919 3.189 1 44.26 ? O6' U2F 501 D 1 
HETATM 22 N N3 U2F . . . N 2 89.906 73.765 4.227 1 47.86 ? N3 U2F 501 D 1 
HETATM 23 C C7' U2F . . . N 2 89.85 75.077 4.287 1 49.28 ? C7' U2F 501 D 1 
HETATM 24 O O7' U2F . . . N 2 90.307 75.757 5.403 1 51.24 ? O7' U2F 501 D 1 
HETATM 25 C C8' U2F . . . N 2 89.325 75.781 3.217 1 51.89 ? C8' U2F 501 D 1 
HETATM 26 C C9' U2F . . . N 2 88.877 75.064 2.119 1 51.43 ? C9' U2F 501 D 1 
HETATM 27 C C2 U2F . . . N 2 83.441 79.877 -6.289 1 65.12 ? C2 U2F 501 D 1 
HETATM 28 F F1 U2F . . . N 2 82.941 80.396 -5.027 1 67.4 ? F1 U2F 501 D 1 
HETATM 29 C C3 U2F . . . N 2 82.34 79.172 -6.937 1 66.71 ? C3 U2F 501 D 1 
HETATM 30 O O3 U2F . . . N 2 82.669 78.894 -8.345 1 84.37 ? O3 U2F 501 D 1 
HETATM 31 C C4 U2F . . . N 2 81.97 77.871 -6.354 1 63.67 ? C4 U2F 501 D 1 
HETATM 32 O O4 U2F . . . N 2 81.297 78.12 -5.108 1 53.79 ? O4 U2F 501 D 1 
HETATM 33 C C5 U2F . . . N 2 83.174 76.898 -6.143 1 68.07 ? C5 U2F 501 D 1 
HETATM 34 C C6 U2F . . . N 2 83.207 75.882 -7.184 1 69.64 ? C6 U2F 501 D 1 
HETATM 35 O O6 U2F . . . N 2 83.829 76.364 -8.341 1 69 ? O6 U2F 501 D 1 
HETATM 36 O O5 U2F . . . N 2 84.55 77.609 -6.109 1 67.08 ? O5 U2F 501 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#