data_9LTA
#
_model_server_result.job_id            jYw5lroYC0Kgf5ESsRkzaQ 
_model_server_result.datetime_utc      '2025-04-16 22:25:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9lta 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    9LTA 
#
_exptl.entry_id    9LTA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              472.991 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[5-chloranyl-2-[[3-[(dimethylamino)methyl]phenyl]amino]pyrimidin-4-yl]-~{N}-morpholin-4-yl-thiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.49 
_cell.angle_gamma         90 
_cell.entry_id            9LTA 
_cell.length_a            46.643 
_cell.length_b            156.917 
_cell.length_c            49.727 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9LTA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H25 Cl N6 O2 S' 
_chem_comp.formula_weight    472.991 
_chem_comp.id                A1EKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[5-chloranyl-2-[[3-[(dimethylamino)methyl]phenyl]amino]pyrimidin-4-yl]-~{N}-morpholin-4-yl-thiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL23 C07 A1EKR sing 1 n n 
C08 C07 A1EKR doub 2 n y 
C08 N09 A1EKR sing 3 n y 
C07 C06 A1EKR sing 4 n y 
N09 C10 A1EKR doub 5 n y 
O25 C24 A1EKR doub 6 n n 
C06 C03 A1EKR sing 7 n n 
C06 N11 A1EKR doub 8 n y 
C02 C03 A1EKR sing 9 n y 
C02 C01 A1EKR doub 10 n y 
C10 N11 A1EKR sing 11 n y 
C10 N12 A1EKR sing 12 n n 
C03 C04 A1EKR doub 13 n y 
C24 C01 A1EKR sing 14 n n 
C24 N26 A1EKR sing 15 n n 
C01 S05 A1EKR sing 16 n y 
N12 C13 A1EKR sing 17 n n 
C04 S05 A1EKR sing 18 n y 
N26 N27 A1EKR sing 19 n n 
C22 N20 A1EKR sing 20 n n 
C13 C18 A1EKR doub 21 n y 
C13 C14 A1EKR sing 22 n y 
N27 C28 A1EKR sing 23 n n 
N27 C32 A1EKR sing 24 n n 
C18 C17 A1EKR sing 25 n y 
C28 C29 A1EKR sing 26 n n 
C14 C15 A1EKR doub 27 n y 
N20 C19 A1EKR sing 28 n n 
N20 C21 A1EKR sing 29 n n 
C17 C19 A1EKR sing 30 n n 
C17 C16 A1EKR doub 31 n y 
C29 O30 A1EKR sing 32 n n 
C32 C31 A1EKR sing 33 n n 
C15 C16 A1EKR sing 34 n y 
C31 O30 A1EKR sing 35 n n 
N12 H121 A1EKR sing 36 n n 
C15 H151 A1EKR sing 37 n n 
C21 H213 A1EKR sing 38 n n 
C21 H212 A1EKR sing 39 n n 
C21 H211 A1EKR sing 40 n n 
C22 H221 A1EKR sing 41 n n 
C22 H223 A1EKR sing 42 n n 
C22 H222 A1EKR sing 43 n n 
C28 H282 A1EKR sing 44 n n 
C28 H281 A1EKR sing 45 n n 
C02 H021 A1EKR sing 46 n n 
C04 H041 A1EKR sing 47 n n 
C08 H081 A1EKR sing 48 n n 
C14 H141 A1EKR sing 49 n n 
C16 H161 A1EKR sing 50 n n 
C18 H181 A1EKR sing 51 n n 
C19 H191 A1EKR sing 52 n n 
C19 H192 A1EKR sing 53 n n 
C29 H292 A1EKR sing 54 n n 
C29 H291 A1EKR sing 55 n n 
C31 H312 A1EKR sing 56 n n 
C31 H311 A1EKR sing 57 n n 
C32 H322 A1EKR sing 58 n n 
C32 H321 A1EKR sing 59 n n 
N26 H261 A1EKR sing 60 n n 
#
_atom_sites.entry_id                     9LTA 
_atom_sites.fract_transf_matrix[1][1]    0.021439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000184 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1EKR B 1 401 401 A1EKR LIG . 
D 2 A1EKR A 1 401 401 A1EKR LIG . 
E 3 HOH B 1 501 19 HOH HOH . 
E 3 HOH B 2 502 24 HOH HOH . 
E 3 HOH B 3 503 35 HOH HOH . 
E 3 HOH B 4 504 34 HOH HOH . 
E 3 HOH B 5 505 22 HOH HOH . 
E 3 HOH B 6 506 44 HOH HOH . 
E 3 HOH B 7 507 37 HOH HOH . 
E 3 HOH B 8 508 41 HOH HOH . 
E 3 HOH B 9 509 9 HOH HOH . 
E 3 HOH B 10 510 40 HOH HOH . 
E 3 HOH B 11 511 43 HOH HOH . 
E 3 HOH B 12 512 38 HOH HOH . 
E 3 HOH B 13 513 45 HOH HOH . 
E 3 HOH B 14 514 27 HOH HOH . 
E 3 HOH B 15 515 25 HOH HOH . 
E 3 HOH B 16 516 17 HOH HOH . 
E 3 HOH B 17 517 21 HOH HOH . 
E 3 HOH B 18 518 8 HOH HOH . 
E 3 HOH B 19 519 12 HOH HOH . 
E 3 HOH B 20 520 1 HOH HOH . 
E 3 HOH B 21 521 6 HOH HOH . 
E 3 HOH B 22 522 10 HOH HOH . 
E 3 HOH B 23 523 39 HOH HOH . 
E 3 HOH B 24 524 7 HOH HOH . 
E 3 HOH B 25 525 33 HOH HOH . 
E 3 HOH B 26 526 32 HOH HOH . 
E 3 HOH B 27 527 18 HOH HOH . 
E 3 HOH B 28 528 23 HOH HOH . 
E 3 HOH B 29 529 3 HOH HOH . 
E 3 HOH B 30 530 26 HOH HOH . 
E 3 HOH B 31 531 20 HOH HOH . 
E 3 HOH B 32 532 13 HOH HOH . 
E 3 HOH B 33 533 11 HOH HOH . 
E 3 HOH B 34 534 49 HOH HOH . 
E 3 HOH B 35 535 14 HOH HOH . 
E 3 HOH B 36 536 16 HOH HOH . 
E 3 HOH B 37 537 36 HOH HOH . 
E 3 HOH B 38 538 42 HOH HOH . 
E 3 HOH B 39 539 50 HOH HOH . 
F 3 HOH A 1 501 28 HOH HOH . 
F 3 HOH A 2 502 29 HOH HOH . 
F 3 HOH A 3 503 48 HOH HOH . 
F 3 HOH A 4 504 4 HOH HOH . 
F 3 HOH A 5 505 31 HOH HOH . 
F 3 HOH A 6 506 30 HOH HOH . 
F 3 HOH A 7 507 47 HOH HOH . 
F 3 HOH A 8 508 5 HOH HOH . 
F 3 HOH A 9 509 15 HOH HOH . 
F 3 HOH A 10 510 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1EKR . . . C 2 -14.758 -10.221 7.618 1 37.04 ? C10 A1EKR 401 B 1 
HETATM 2 N N12 A1EKR . . . C 2 -15.086 -9.379 6.473 1 36.23 ? N12 A1EKR 401 B 1 
HETATM 3 C C13 A1EKR . . . C 2 -15.519 -9.912 5.189 1 39.88 ? C13 A1EKR 401 B 1 
HETATM 4 C C15 A1EKR . . . C 2 -15.549 -11.571 3.452 1 42.15 ? C15 A1EKR 401 B 1 
HETATM 5 C C17 A1EKR . . . C 2 -16.935 -9.611 3.265 1 45.86 ? C17 A1EKR 401 B 1 
HETATM 6 C C21 A1EKR . . . C 2 -19.307 -7.52 3.991 1 46.69 ? C21 A1EKR 401 B 1 
HETATM 7 C C22 A1EKR . . . C 2 -20.312 -8.689 2.206 1 51.12 ? C22 A1EKR 401 B 1 
HETATM 8 C C24 A1EKR . . . C 2 -13.571 -17.512 9.197 1 46.73 ? C24 A1EKR 401 B 1 
HETATM 9 C C28 A1EKR . . . C 2 -14.234 -20.013 6.786 1 53.13 ? C28 A1EKR 401 B 1 
HETATM 10 C C01 A1EKR . . . C 2 -13.754 -16.116 8.591 1 44.52 ? C01 A1EKR 401 B 1 
HETATM 11 C C02 A1EKR . . . C 2 -13.972 -14.884 9.285 1 36.6 ? C02 A1EKR 401 B 1 
HETATM 12 C C03 A1EKR . . . C 2 -14.027 -13.739 8.274 1 37.83 ? C03 A1EKR 401 B 1 
HETATM 13 C C04 A1EKR . . . C 2 -13.837 -14.239 6.947 1 43.22 ? C04 A1EKR 401 B 1 
HETATM 14 C C06 A1EKR . . . C 2 -14.267 -12.259 8.541 1 30.9 ? C06 A1EKR 401 B 1 
HETATM 15 C C07 A1EKR . . . C 2 -14.149 -11.665 9.79 1 31.94 ? C07 A1EKR 401 B 1 
HETATM 16 C C08 A1EKR . . . C 2 -14.372 -10.305 9.886 1 28.92 ? C08 A1EKR 401 B 1 
HETATM 17 C C14 A1EKR . . . C 2 -15.072 -11.123 4.678 1 39.05 ? C14 A1EKR 401 B 1 
HETATM 18 C C16 A1EKR . . . C 2 -16.482 -10.819 2.745 1 43.44 ? C16 A1EKR 401 B 1 
HETATM 19 C C18 A1EKR . . . C 2 -16.453 -9.168 4.483 1 42.12 ? C18 A1EKR 401 B 1 
HETATM 20 C C19 A1EKR . . . C 2 -17.952 -8.748 2.509 1 44.29 ? C19 A1EKR 401 B 1 
HETATM 21 C C29 A1EKR . . . C 2 -15.555 -20.789 6.884 1 53.89 ? C29 A1EKR 401 B 1 
HETATM 22 C C31 A1EKR . . . C 2 -16.541 -19.114 8.139 1 44.9 ? C31 A1EKR 401 B 1 
HETATM 23 C C32 A1EKR . . . C 2 -15.611 -18.281 7.261 1 49.76 ? C32 A1EKR 401 B 1 
HETATM 24 N N09 A1EKR . . . C 2 -14.655 -9.632 8.793 1 33.63 ? N09 A1EKR 401 B 1 
HETATM 25 N N11 A1EKR . . . C 2 -14.549 -11.517 7.491 1 37.2 ? N11 A1EKR 401 B 1 
HETATM 26 N N20 A1EKR . . . C 2 -19.238 -8.727 3.186 1 49.76 ? N20 A1EKR 401 B 1 
HETATM 27 N N26 A1EKR . . . C 2 -13.847 -18.732 8.443 1 53.46 ? N26 A1EKR 401 B 1 
HETATM 28 N N27 A1EKR . . . C 2 -14.287 -18.72 7.28 1 54.24 ? N27 A1EKR 401 B 1 
HETATM 29 O O25 A1EKR . . . C 2 -13.175 -17.597 10.309 1 47.03 ? O25 A1EKR 401 B 1 
HETATM 30 O O30 A1EKR . . . C 2 -16.344 -20.474 7.981 1 51.56 ? O30 A1EKR 401 B 1 
HETATM 31 S S05 A1EKR . . . C 2 -13.609 -15.834 7.002 1 53.46 ? S05 A1EKR 401 B 1 
HETATM 32 CL CL23 A1EKR . . . C 2 -13.767 -12.557 11.279 1 25.41 ? CL23 A1EKR 401 B 1 
HETATM 33 H H121 A1EKR . . . C 2 -15.009 -8.386 6.574 1 43.49 ? H121 A1EKR 401 B 1 
HETATM 34 H H151 A1EKR . . . C 2 -15.194 -12.511 3.046 1 50.59 ? H151 A1EKR 401 B 1 
HETATM 35 H H213 A1EKR . . . C 2 -18.615 -7.6 4.824 1 56.03 ? H213 A1EKR 401 B 1 
HETATM 36 H H212 A1EKR . . . C 2 -19.04 -6.662 3.38 1 56.03 ? H212 A1EKR 401 B 1 
HETATM 37 H H211 A1EKR . . . C 2 -20.317 -7.395 4.37 1 56.03 ? H211 A1EKR 401 B 1 
HETATM 38 H H221 A1EKR . . . C 2 -20.142 -7.868 1.514 1 61.35 ? H221 A1EKR 401 B 1 
HETATM 39 H H223 A1EKR . . . C 2 -20.335 -9.627 1.658 1 61.35 ? H223 A1EKR 401 B 1 
HETATM 40 H H222 A1EKR . . . C 2 -21.261 -8.543 2.715 1 61.35 ? H222 A1EKR 401 B 1 
HETATM 41 H H282 A1EKR . . . C 2 -13.944 -19.966 5.743 1 63.76 ? H282 A1EKR 401 B 1 
HETATM 42 H H281 A1EKR . . . C 2 -13.479 -20.557 7.343 1 63.76 ? H281 A1EKR 401 B 1 
HETATM 43 H H021 A1EKR . . . C 2 -14.081 -14.779 10.359 1 43.92 ? H021 A1EKR 401 B 1 
HETATM 44 H H041 A1EKR . . . C 2 -13.844 -13.638 6.044 1 51.87 ? H041 A1EKR 401 B 1 
HETATM 45 H H081 A1EKR . . . C 2 -14.316 -9.802 10.845 1 34.7 ? H081 A1EKR 401 B 1 
HETATM 46 H H141 A1EKR . . . C 2 -14.354 -11.716 5.232 1 46.87 ? H141 A1EKR 401 B 1 
HETATM 47 H H161 A1EKR . . . C 2 -16.854 -11.172 1.791 1 52.13 ? H161 A1EKR 401 B 1 
HETATM 48 H H181 A1EKR . . . C 2 -16.808 -8.229 4.89 1 50.55 ? H181 A1EKR 401 B 1 
HETATM 49 H H191 A1EKR . . . C 2 -17.572 -7.732 2.44 1 53.15 ? H191 A1EKR 401 B 1 
HETATM 50 H H192 A1EKR . . . C 2 -18.084 -9.15 1.51 1 53.15 ? H192 A1EKR 401 B 1 
HETATM 51 H H292 A1EKR . . . C 2 -15.322 -21.847 6.93 1 64.67 ? H292 A1EKR 401 B 1 
HETATM 52 H H291 A1EKR . . . C 2 -16.131 -20.589 5.987 1 64.67 ? H291 A1EKR 401 B 1 
HETATM 53 H H312 A1EKR . . . C 2 -17.567 -18.878 7.881 1 53.88 ? H312 A1EKR 401 B 1 
HETATM 54 H H311 A1EKR . . . C 2 -16.364 -18.855 9.177 1 53.88 ? H311 A1EKR 401 B 1 
HETATM 55 H H322 A1EKR . . . C 2 -15.973 -18.323 6.239 1 59.72 ? H322 A1EKR 401 B 1 
HETATM 56 H H321 A1EKR . . . C 2 -15.638 -17.253 7.608 1 59.72 ? H321 A1EKR 401 B 1 
HETATM 57 H H261 A1EKR . . . C 2 -13.674 -19.616 8.881 1 64.16 ? H261 A1EKR 401 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           445 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           57 
#