data_9LVD
#
_model_server_result.job_id            Gp6OFNR_SctB2vBHQTgnEQ 
_model_server_result.datetime_utc      '2025-03-04 09:36:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9lvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":104}' 
#
_entry.id    9LVD 
#
_exptl.entry_id    9LVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              228.371 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MYRISTIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9LVD 
_cell.length_a            80.711 
_cell.length_b            80.711 
_cell.length_c            39.64 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9LVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 B NZ LYS 29 B LYS 29 1_555 H C1 MYR . B MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 H C14 MYR . B MYR 104 1_555 L C13 MYR . D MYR 104 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale3 D NZ LYS 29 D LYS 29 1_555 L C1 MYR . D MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc2 B NE2 HIS 10 B HIS 10 1_555 F ZN ZN . B ZN 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc3 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 102 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C14 H28 O2' 
_chem_comp.formula_weight    228.371 
_chem_comp.id                MYR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MYRISTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MYR doub 216 n n 
C1 O2 MYR sing 217 n n 
C1 C2 MYR sing 218 n n 
O2 HO2 MYR sing 219 n n 
C2 C3 MYR sing 220 n n 
C2 H21 MYR sing 221 n n 
C2 H22 MYR sing 222 n n 
C3 C4 MYR sing 223 n n 
C3 H31 MYR sing 224 n n 
C3 H32 MYR sing 225 n n 
C4 C5 MYR sing 226 n n 
C4 H41 MYR sing 227 n n 
C4 H42 MYR sing 228 n n 
C5 C6 MYR sing 229 n n 
C5 H51 MYR sing 230 n n 
C5 H52 MYR sing 231 n n 
C6 C7 MYR sing 232 n n 
C6 H61 MYR sing 233 n n 
C6 H62 MYR sing 234 n n 
C7 C8 MYR sing 235 n n 
C7 H71 MYR sing 236 n n 
C7 H72 MYR sing 237 n n 
C8 C9 MYR sing 238 n n 
C8 H81 MYR sing 239 n n 
C8 H82 MYR sing 240 n n 
C9 C10 MYR sing 241 n n 
C9 H91 MYR sing 242 n n 
C9 H92 MYR sing 243 n n 
C10 C11 MYR sing 244 n n 
C10 H101 MYR sing 245 n n 
C10 H102 MYR sing 246 n n 
C11 C12 MYR sing 247 n n 
C11 H111 MYR sing 248 n n 
C11 H112 MYR sing 249 n n 
C12 C13 MYR sing 250 n n 
C12 H121 MYR sing 251 n n 
C12 H122 MYR sing 252 n n 
C13 C14 MYR sing 253 n n 
C13 H131 MYR sing 254 n n 
C13 H132 MYR sing 255 n n 
C14 H141 MYR sing 256 n n 
C14 H142 MYR sing 257 n n 
C14 H143 MYR sing 258 n n 
#
_atom_sites.entry_id                     9LVD 
_atom_sites.fract_transf_matrix[1][1]    0.01239 
_atom_sites.fract_transf_matrix[1][2]    0.007153 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 IPH B 1 101 22 IPH IPH . 
F 4 ZN B 1 102 30 ZN ZN . 
G 5 CL B 1 103 31 CL CL . 
H 6 MYR B 1 104 39 MYR MYR . 
I 3 IPH D 1 101 22 IPH IPH . 
J 4 ZN D 1 102 30 ZN ZN . 
K 5 CL D 1 103 31 CL CL . 
L 6 MYR D 1 104 39 MYR MYR . 
M 7 HOH B 1 201 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYR . . . L 6 -8.785 11.791 2.437 0 200.06 ? C1 MYR 104 D 1 
HETATM 2 O O1 MYR . . . L 6 -9.691 11.761 1.579 0 199.33 ? O1 MYR 104 D 1 
HETATM 3 C C2 MYR . . . L 6 -7.349 11.53 2.044 0 198.67 ? C2 MYR 104 D 1 
HETATM 4 C C3 MYR . . . L 6 -6.859 12.617 1.094 0 195.53 ? C3 MYR 104 D 1 
HETATM 5 C C4 MYR . . . L 6 -5.499 12.243 0.518 0 190.24 ? C4 MYR 104 D 1 
HETATM 6 C C5 MYR . . . L 6 -5.644 11.431 -0.764 0 191.7 ? C5 MYR 104 D 1 
HETATM 7 C C6 MYR . . . L 6 -5.158 9.999 -0.591 0 191.96 ? C6 MYR 104 D 1 
HETATM 8 C C7 MYR . . . L 6 -4.758 9.406 -1.936 0 185.06 ? C7 MYR 104 D 1 
HETATM 9 C C8 MYR . . . L 6 -3.662 10.214 -2.621 0 176.29 ? C8 MYR 104 D 1 
HETATM 10 C C9 MYR . . . L 6 -3.006 9.385 -3.717 0 170.98 ? C9 MYR 104 D 1 
HETATM 11 C C10 MYR . . . L 6 -2.66 8.006 -3.177 0 168.17 ? C10 MYR 104 D 1 
HETATM 12 C C11 MYR . . . L 6 -2.965 6.844 -4.111 0 163.95 ? C11 MYR 104 D 1 
HETATM 13 C C12 MYR . . . L 6 -2.406 5.548 -3.536 0 163.08 ? C12 MYR 104 D 1 
HETATM 14 C C13 MYR . . . L 6 -3.512 4.563 -3.176 0 167.26 ? C13 MYR 104 D 1 
HETATM 15 C C14 MYR . . . L 6 -3.9 3.735 -4.395 0 181.82 ? C14 MYR 104 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#