data_9LVR # _model_server_result.job_id e13gJkctCspg8n3ViCxWvQ _model_server_result.datetime_utc '2025-09-05 14:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9lvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9LVR # _exptl.entry_id 9LVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.427 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(1,3-dihydroisoindol-2-yl)-3-(5-methylpyridin-3-yl)-1-[[3,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9LVR _cell.length_a 67.83 _cell.length_b 101.249 _cell.length_c 104.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C24 H18 F3 N5 O2' _chem_comp.formula_weight 465.427 _chem_comp.id A1L7P _chem_comp.mon_nstd_flag . _chem_comp.name 6-(1,3-dihydroisoindol-2-yl)-3-(5-methylpyridin-3-yl)-1-[[3,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 A1L7P sing 1 n n C02 C07 A1L7P sing 2 n y C02 C03 A1L7P doub 3 n y C07 N06 A1L7P doub 4 n y C03 C04 A1L7P sing 5 n y N06 C05 A1L7P sing 6 n y C04 C05 A1L7P doub 7 n y C04 N08 A1L7P sing 8 n n O10 C09 A1L7P doub 9 n n N08 C09 A1L7P sing 10 n n N08 C33 A1L7P sing 11 n n C09 N11 A1L7P sing 12 n n O34 C33 A1L7P doub 13 n n C33 N22 A1L7P sing 14 n n N11 C12 A1L7P doub 15 n n N22 C12 A1L7P sing 16 n n N22 C23 A1L7P sing 17 n n C12 N13 A1L7P sing 18 n n C23 C24 A1L7P sing 19 n n N13 C14 A1L7P sing 20 n n N13 C21 A1L7P sing 21 n n C14 C15 A1L7P sing 22 n n C24 C25 A1L7P sing 23 n y C24 C32 A1L7P doub 24 n y C21 C20 A1L7P sing 25 n n C25 C26 A1L7P doub 26 n y C32 C30 A1L7P sing 27 n y C15 C20 A1L7P sing 28 n y C15 C16 A1L7P doub 29 n y C20 C19 A1L7P doub 30 n y C16 C17 A1L7P sing 31 n y C26 F27 A1L7P sing 32 n n C26 C28 A1L7P sing 33 n y C30 C28 A1L7P doub 34 n y C30 F31 A1L7P sing 35 n n C28 F29 A1L7P sing 36 n n C19 C18 A1L7P sing 37 n y C17 C18 A1L7P doub 38 n y C14 H1 A1L7P sing 39 n n C01 H2 A1L7P sing 40 n n C01 H3 A1L7P sing 41 n n C01 H4 A1L7P sing 42 n n C03 H5 A1L7P sing 43 n n C05 H6 A1L7P sing 44 n n C07 H7 A1L7P sing 45 n n C16 H8 A1L7P sing 46 n n C17 H9 A1L7P sing 47 n n C18 H10 A1L7P sing 48 n n C19 H11 A1L7P sing 49 n n C21 H12 A1L7P sing 50 n n C23 H13 A1L7P sing 51 n n C23 H14 A1L7P sing 52 n n C25 H15 A1L7P sing 53 n n C32 H16 A1L7P sing 54 n n C14 H17 A1L7P sing 55 n n C21 H18 A1L7P sing 56 n n # _atom_sites.entry_id 9LVR _atom_sites.fract_transf_matrix[1][1] 0.014743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1L7P A 1 501 501 A1L7P MOL . D 3 EDO A 1 502 1 EDO EDO . E 2 A1L7P B 1 401 502 A1L7P MOL . F 4 HOH A 1 601 53 HOH HOH . F 4 HOH A 2 602 54 HOH HOH . F 4 HOH A 3 603 50 HOH HOH . F 4 HOH A 4 604 17 HOH HOH . F 4 HOH A 5 605 42 HOH HOH . F 4 HOH A 6 606 46 HOH HOH . F 4 HOH A 7 607 11 HOH HOH . F 4 HOH A 8 608 43 HOH HOH . F 4 HOH A 9 609 45 HOH HOH . F 4 HOH A 10 610 20 HOH HOH . F 4 HOH A 11 611 3 HOH HOH . F 4 HOH A 12 612 34 HOH HOH . F 4 HOH A 13 613 9 HOH HOH . F 4 HOH A 14 614 30 HOH HOH . F 4 HOH A 15 615 22 HOH HOH . F 4 HOH A 16 616 55 HOH HOH . F 4 HOH A 17 617 29 HOH HOH . F 4 HOH A 18 618 4 HOH HOH . F 4 HOH A 19 619 23 HOH HOH . F 4 HOH A 20 620 51 HOH HOH . F 4 HOH A 21 621 52 HOH HOH . F 4 HOH A 22 622 16 HOH HOH . F 4 HOH A 23 623 65 HOH HOH . F 4 HOH A 24 624 63 HOH HOH . F 4 HOH A 25 625 19 HOH HOH . F 4 HOH A 26 626 31 HOH HOH . F 4 HOH A 27 627 62 HOH HOH . G 4 HOH B 1 501 5 HOH HOH . G 4 HOH B 2 502 57 HOH HOH . G 4 HOH B 3 503 48 HOH HOH . G 4 HOH B 4 504 68 HOH HOH . G 4 HOH B 5 505 15 HOH HOH . G 4 HOH B 6 506 47 HOH HOH . G 4 HOH B 7 507 6 HOH HOH . G 4 HOH B 8 508 7 HOH HOH . G 4 HOH B 9 509 12 HOH HOH . G 4 HOH B 10 510 2 HOH HOH . G 4 HOH B 11 511 44 HOH HOH . G 4 HOH B 12 512 66 HOH HOH . G 4 HOH B 13 513 26 HOH HOH . G 4 HOH B 14 514 24 HOH HOH . G 4 HOH B 15 515 58 HOH HOH . G 4 HOH B 16 516 18 HOH HOH . G 4 HOH B 17 517 39 HOH HOH . G 4 HOH B 18 518 1 HOH HOH . G 4 HOH B 19 519 35 HOH HOH . G 4 HOH B 20 520 21 HOH HOH . G 4 HOH B 21 521 59 HOH HOH . G 4 HOH B 22 522 38 HOH HOH . G 4 HOH B 23 523 60 HOH HOH . G 4 HOH B 24 524 32 HOH HOH . G 4 HOH B 25 525 13 HOH HOH . G 4 HOH B 26 526 33 HOH HOH . G 4 HOH B 27 527 8 HOH HOH . G 4 HOH B 28 528 27 HOH HOH . G 4 HOH B 29 529 25 HOH HOH . G 4 HOH B 30 530 37 HOH HOH . G 4 HOH B 31 531 67 HOH HOH . G 4 HOH B 32 532 36 HOH HOH . G 4 HOH B 33 533 49 HOH HOH . G 4 HOH B 34 534 41 HOH HOH . G 4 HOH B 35 535 40 HOH HOH . G 4 HOH B 36 536 61 HOH HOH . G 4 HOH B 37 537 56 HOH HOH . G 4 HOH B 38 538 28 HOH HOH . G 4 HOH B 39 539 10 HOH HOH . G 4 HOH B 40 540 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A1L7P . . . C 2 49.173 13.73 -3.044 1 49.82 ? C12 A1L7P 501 A 1 HETATM 2 C C14 A1L7P . . . C 2 49.167 16.038 -1.759 1 63.82 ? C14 A1L7P 501 A 1 HETATM 3 C C15 A1L7P . . . C 2 49.779 16.549 -0.424 1 68.01 ? C15 A1L7P 501 A 1 HETATM 4 C C01 A1L7P . . . C 2 48.156 11.036 -10.141 1 44.48 ? C01 A1L7P 501 A 1 HETATM 5 C C02 A1L7P . . . C 2 47.65 10.711 -8.689 1 46.28 ? C02 A1L7P 501 A 1 HETATM 6 C C03 A1L7P . . . C 2 48.08 11.437 -7.545 1 42.07 ? C03 A1L7P 501 A 1 HETATM 7 C C04 A1L7P . . . C 2 47.618 11.145 -6.219 1 42.24 ? C04 A1L7P 501 A 1 HETATM 8 C C05 A1L7P . . . C 2 46.704 10.079 -6.077 1 40.04 ? C05 A1L7P 501 A 1 HETATM 9 N N06 A1L7P . . . C 2 46.259 9.35 -7.163 1 41.25 ? N06 A1L7P 501 A 1 HETATM 10 C C07 A1L7P . . . C 2 46.7 9.642 -8.434 1 43.83 ? C07 A1L7P 501 A 1 HETATM 11 N N08 A1L7P . . . C 2 48.118 11.926 -5.128 1 41.97 ? N08 A1L7P 501 A 1 HETATM 12 C C09 A1L7P . . . C 2 47.628 13.336 -4.913 1 46.86 ? C09 A1L7P 501 A 1 HETATM 13 O O10 A1L7P . . . C 2 46.742 13.782 -5.614 1 45.96 ? O10 A1L7P 501 A 1 HETATM 14 N N11 A1L7P . . . C 2 48.218 14.122 -3.856 1 49.35 ? N11 A1L7P 501 A 1 HETATM 15 N N13 A1L7P . . . C 2 49.652 14.615 -2.015 1 57.28 ? N13 A1L7P 501 A 1 HETATM 16 C C16 A1L7P . . . C 2 49.589 17.749 0.32 1 75.24 ? C16 A1L7P 501 A 1 HETATM 17 C C17 A1L7P . . . C 2 50.274 17.958 1.549 1 73.58 ? C17 A1L7P 501 A 1 HETATM 18 C C18 A1L7P . . . C 2 51.149 16.958 2.018 1 71.62 ? C18 A1L7P 501 A 1 HETATM 19 C C19 A1L7P . . . C 2 51.33 15.784 1.26 1 65.97 ? C19 A1L7P 501 A 1 HETATM 20 C C20 A1L7P . . . C 2 50.652 15.57 0.058 1 64.4 ? C20 A1L7P 501 A 1 HETATM 21 C C21 A1L7P . . . C 2 50.71 14.389 -0.961 1 61.73 ? C21 A1L7P 501 A 1 HETATM 22 N N22 A1L7P . . . C 2 49.702 12.311 -3.199 1 45.81 ? N22 A1L7P 501 A 1 HETATM 23 C C23 A1L7P . . . C 2 50.854 11.743 -2.49 1 47.17 ? C23 A1L7P 501 A 1 HETATM 24 C C24 A1L7P . . . C 2 50.916 10.958 -1.275 1 45.97 ? C24 A1L7P 501 A 1 HETATM 25 C C25 A1L7P . . . C 2 52.227 10.733 -0.785 1 43.31 ? C25 A1L7P 501 A 1 HETATM 26 C C26 A1L7P . . . C 2 52.435 9.996 0.363 1 47.32 ? C26 A1L7P 501 A 1 HETATM 27 F F27 A1L7P . . . C 2 53.655 9.797 0.828 1 48.72 ? F27 A1L7P 501 A 1 HETATM 28 C C28 A1L7P . . . C 2 51.304 9.443 1.041 1 46.82 ? C28 A1L7P 501 A 1 HETATM 29 F F29 A1L7P . . . C 2 51.458 8.751 2.121 1 45.61 ? F29 A1L7P 501 A 1 HETATM 30 C C30 A1L7P . . . C 2 49.994 9.673 0.521 1 48.9 ? C30 A1L7P 501 A 1 HETATM 31 F F31 A1L7P . . . C 2 48.973 9.163 1.157 1 51.48 ? F31 A1L7P 501 A 1 HETATM 32 C C32 A1L7P . . . C 2 49.811 10.439 -0.648 1 45.56 ? C32 A1L7P 501 A 1 HETATM 33 C C33 A1L7P . . . C 2 49.195 11.448 -4.3 1 42.5 ? C33 A1L7P 501 A 1 HETATM 34 O O34 A1L7P . . . C 2 49.661 10.311 -4.453 1 36.46 ? O34 A1L7P 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #