data_9LVX # _model_server_result.job_id seM-A1XOf4cfywTsdJrcjg _model_server_result.datetime_utc '2025-03-06 08:06:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9lvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":102}' # _entry.id 9LVX # _exptl.entry_id 9LVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9LVX _cell.length_a 80.898 _cell.length_b 80.898 _cell.length_c 80.414 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1,2,3 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N ? 4 R N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 E SG CYS 6 E CYS 6 1_555 E SG CYS 11 E CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 E SG CYS 7 E CYS 7 1_555 F SG CYS 7 F CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 E SG CYS 20 E CYS 20 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 G SG CYS 6 G CYS 6 1_555 G SG CYS 11 G CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 G SG CYS 7 G CYS 7 1_555 H SG CYS 7 H CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 G SG CYS 20 G CYS 20 1_555 H SG CYS 19 H CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B NZ LYS 29 B LYS 29 1_555 L C1 MYR . B MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 L C8 MYR . B MYR 104 1_555 X C7 MYR . H MYR 104 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale3 D NZ LYS 29 D LYS 29 1_555 P C1 MYR . D MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 P C6 MYR . D MYR 104 1_555 E CG2 THR 8 E THR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale5 P C14 MYR . D MYR 104 1_555 T C14 MYR . F MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale6 F NZ LYS 29 F LYS 29 1_555 T C1 MYR . F MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 H NZ LYS 29 H LYS 29 1_555 X C1 MYR . H MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 J ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 1_555 J ZN ZN . B ZN 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 D NE2 HIS 10 D HIS 10 1_555 N ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 N ZN ZN . D ZN 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc5 F NE2 HIS 10 F HIS 10 1_555 R ZN ZN . F ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 F NE2 HIS 10 F HIS 10 1_555 R ZN ZN . F ZN 102 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc7 H NE2 HIS 10 H HIS 10 1_555 V ZN ZN . H ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 H NE2 HIS 10 H HIS 10 1_555 V ZN ZN . H ZN 102 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9LVX _atom_sites.fract_transf_matrix[1][1] 0.012361 _atom_sites.fract_transf_matrix[1][2] 0.007137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 IPH B 1 101 22 IPH IPH . J 4 ZN B 1 102 30 ZN ZN . K 5 CL B 1 103 31 CL CL . L 6 MYR B 1 104 39 MYR MYR . M 3 IPH D 1 101 22 IPH IPH . N 4 ZN D 1 102 30 ZN ZN . O 5 CL D 1 103 31 CL CL . P 6 MYR D 1 104 39 MYR MYR . Q 3 IPH F 1 101 22 IPH IPH . R 4 ZN F 1 102 30 ZN ZN . S 5 CL F 1 103 31 CL CL . T 6 MYR F 1 104 39 MYR MYR . U 3 IPH H 1 101 22 IPH IPH . V 4 ZN H 1 102 30 ZN ZN . W 5 CL H 1 103 31 CL CL . X 6 MYR H 1 104 39 MYR MYR . Y 7 HOH A 1 101 123 HOH HOH . Y 7 HOH A 2 102 95 HOH HOH . Y 7 HOH A 3 103 52 HOH HOH . Y 7 HOH A 4 104 94 HOH HOH . Y 7 HOH A 5 105 23 HOH HOH . Y 7 HOH A 6 106 107 HOH HOH . Y 7 HOH A 7 107 122 HOH HOH . Y 7 HOH A 8 108 50 HOH HOH . Y 7 HOH A 9 109 85 HOH HOH . Y 7 HOH A 10 110 155 HOH HOH . Y 7 HOH A 11 111 48 HOH HOH . Y 7 HOH A 12 112 48 HOH HOH . Y 7 HOH A 13 113 64 HOH HOH . Y 7 HOH A 14 114 136 HOH HOH . Y 7 HOH A 15 115 134 HOH HOH . Z 7 HOH B 1 201 30 HOH HOH . Z 7 HOH B 2 202 45 HOH HOH . Z 7 HOH B 3 203 50 HOH HOH . Z 7 HOH B 4 204 56 HOH HOH . Z 7 HOH B 5 205 60 HOH HOH . Z 7 HOH B 6 206 40 HOH HOH . Z 7 HOH B 7 207 27 HOH HOH . Z 7 HOH B 8 208 63 HOH HOH . Z 7 HOH B 9 209 62 HOH HOH . Z 7 HOH B 10 210 44 HOH HOH . Z 7 HOH B 11 211 42 HOH HOH . Z 7 HOH B 12 212 47 HOH HOH . Z 7 HOH B 13 213 49 HOH HOH . Z 7 HOH B 14 214 35 HOH HOH . Z 7 HOH B 15 215 50 HOH HOH . Z 7 HOH B 16 216 43 HOH HOH . Z 7 HOH B 17 217 41 HOH HOH . Z 7 HOH B 18 218 61 HOH HOH . Z 7 HOH B 19 219 59 HOH HOH . Z 7 HOH B 20 220 54 HOH HOH . Z 7 HOH B 21 221 71 HOH HOH . Z 7 HOH B 22 222 57 HOH HOH . Z 7 HOH B 23 223 97 HOH HOH . AA 7 HOH C 1 101 26 HOH HOH . AA 7 HOH C 2 102 41 HOH HOH . AA 7 HOH C 3 103 42 HOH HOH . AA 7 HOH C 4 104 99 HOH HOH . AA 7 HOH C 5 105 52 HOH HOH . AA 7 HOH C 6 106 140 HOH HOH . AA 7 HOH C 7 107 139 HOH HOH . AA 7 HOH C 8 108 129 HOH HOH . AA 7 HOH C 9 109 44 HOH HOH . AA 7 HOH C 10 110 162 HOH HOH . AA 7 HOH C 11 111 23 HOH HOH . AA 7 HOH C 12 112 156 HOH HOH . AA 7 HOH C 13 113 55 HOH HOH . AA 7 HOH C 14 114 45 HOH HOH . AA 7 HOH C 15 115 103 HOH HOH . AA 7 HOH C 16 116 45 HOH HOH . AA 7 HOH C 17 117 53 HOH HOH . AA 7 HOH C 18 118 144 HOH HOH . AA 7 HOH C 19 119 32 HOH HOH . BA 7 HOH D 1 201 44 HOH HOH . BA 7 HOH D 2 202 51 HOH HOH . BA 7 HOH D 3 203 41 HOH HOH . BA 7 HOH D 4 204 53 HOH HOH . BA 7 HOH D 5 205 56 HOH HOH . BA 7 HOH D 6 206 47 HOH HOH . BA 7 HOH D 7 207 55 HOH HOH . BA 7 HOH D 8 208 42 HOH HOH . BA 7 HOH D 9 209 45 HOH HOH . BA 7 HOH D 10 210 58 HOH HOH . BA 7 HOH D 11 211 46 HOH HOH . BA 7 HOH D 12 212 113 HOH HOH . BA 7 HOH D 13 213 49 HOH HOH . BA 7 HOH D 14 214 46 HOH HOH . BA 7 HOH D 15 215 43 HOH HOH . BA 7 HOH D 16 216 120 HOH HOH . BA 7 HOH D 17 217 43 HOH HOH . BA 7 HOH D 18 218 141 HOH HOH . BA 7 HOH D 19 219 51 HOH HOH . BA 7 HOH D 20 220 121 HOH HOH . BA 7 HOH D 21 221 54 HOH HOH . CA 7 HOH E 1 101 29 HOH HOH . CA 7 HOH E 2 102 143 HOH HOH . CA 7 HOH E 3 103 44 HOH HOH . CA 7 HOH E 4 104 24 HOH HOH . CA 7 HOH E 5 105 41 HOH HOH . CA 7 HOH E 6 106 28 HOH HOH . CA 7 HOH E 7 107 25 HOH HOH . CA 7 HOH E 8 108 35 HOH HOH . CA 7 HOH E 9 109 34 HOH HOH . CA 7 HOH E 10 110 142 HOH HOH . CA 7 HOH E 11 111 36 HOH HOH . DA 7 HOH F 1 201 45 HOH HOH . DA 7 HOH F 2 202 53 HOH HOH . DA 7 HOH F 3 203 40 HOH HOH . DA 7 HOH F 4 204 48 HOH HOH . DA 7 HOH F 5 205 54 HOH HOH . DA 7 HOH F 6 206 33 HOH HOH . DA 7 HOH F 7 207 44 HOH HOH . DA 7 HOH F 8 208 31 HOH HOH . DA 7 HOH F 9 209 49 HOH HOH . DA 7 HOH F 10 210 55 HOH HOH . DA 7 HOH F 11 211 59 HOH HOH . DA 7 HOH F 12 212 49 HOH HOH . DA 7 HOH F 13 213 47 HOH HOH . DA 7 HOH F 14 214 46 HOH HOH . DA 7 HOH F 15 215 52 HOH HOH . DA 7 HOH F 16 216 27 HOH HOH . DA 7 HOH F 17 217 52 HOH HOH . EA 7 HOH G 1 101 53 HOH HOH . EA 7 HOH G 2 102 43 HOH HOH . EA 7 HOH G 3 103 48 HOH HOH . EA 7 HOH G 4 104 31 HOH HOH . EA 7 HOH G 5 105 25 HOH HOH . EA 7 HOH G 6 106 52 HOH HOH . EA 7 HOH G 7 107 32 HOH HOH . EA 7 HOH G 8 108 34 HOH HOH . EA 7 HOH G 9 109 26 HOH HOH . EA 7 HOH G 10 110 46 HOH HOH . EA 7 HOH G 11 111 36 HOH HOH . EA 7 HOH G 12 112 38 HOH HOH . EA 7 HOH G 13 113 66 HOH HOH . EA 7 HOH G 14 114 29 HOH HOH . EA 7 HOH G 15 115 42 HOH HOH . EA 7 HOH G 16 116 49 HOH HOH . EA 7 HOH G 17 117 23 HOH HOH . EA 7 HOH G 18 118 50 HOH HOH . EA 7 HOH G 19 119 35 HOH HOH . EA 7 HOH G 20 120 40 HOH HOH . EA 7 HOH G 21 121 33 HOH HOH . EA 7 HOH G 22 122 28 HOH HOH . FA 7 HOH H 1 201 47 HOH HOH . FA 7 HOH H 2 202 135 HOH HOH . FA 7 HOH H 3 203 48 HOH HOH . FA 7 HOH H 4 204 40 HOH HOH . FA 7 HOH H 5 205 56 HOH HOH . FA 7 HOH H 6 206 51 HOH HOH . FA 7 HOH H 7 207 24 HOH HOH . FA 7 HOH H 8 208 54 HOH HOH . FA 7 HOH H 9 209 42 HOH HOH . FA 7 HOH H 10 210 46 HOH HOH . FA 7 HOH H 11 211 55 HOH HOH . FA 7 HOH H 12 212 42 HOH HOH . FA 7 HOH H 13 213 37 HOH HOH . FA 7 HOH H 14 214 57 HOH HOH . FA 7 HOH H 15 215 58 HOH HOH . FA 7 HOH H 16 216 41 HOH HOH . FA 7 HOH H 17 217 47 HOH HOH . FA 7 HOH H 18 218 43 HOH HOH . FA 7 HOH H 19 219 45 HOH HOH . FA 7 HOH H 20 220 51 HOH HOH . FA 7 HOH H 21 221 50 HOH HOH . FA 7 HOH H 22 222 51 HOH HOH . FA 7 HOH H 23 223 30 HOH HOH . FA 7 HOH H 24 224 37 HOH HOH . FA 7 HOH H 25 225 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 4 _atom_site.Cartn_x 0.046 _atom_site.Cartn_y -0.079 _atom_site.Cartn_z 8.384 _atom_site.occupancy 0.29 _atom_site.B_iso_or_equiv 23.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #