data_9LVY # _model_server_result.job_id 6jB7Qc7-MJUFOdQETFTRMA _model_server_result.datetime_utc '2025-03-04 05:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9lvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":104}' # _entry.id 9LVY # _exptl.entry_id 9LVY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9LVY _cell.length_a 81.24 _cell.length_b 81.24 _cell.length_c 40.322 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9LVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A CG2 THR 8 A THR 8 1_555 L C6 MYR . D MYR 104 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale2 B NZ LYS 29 B LYS 29 1_555 H C1 MYR . B MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 H C14 MYR . B MYR 104 1_555 L C13 MYR . D MYR 104 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale4 D NZ LYS 29 D LYS 29 1_555 L C1 MYR . D MYR 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 F ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 1_555 F ZN ZN . B ZN 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc3 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 102 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 216 n n C1 O2 MYR sing 217 n n C1 C2 MYR sing 218 n n O2 HO2 MYR sing 219 n n C2 C3 MYR sing 220 n n C2 H21 MYR sing 221 n n C2 H22 MYR sing 222 n n C3 C4 MYR sing 223 n n C3 H31 MYR sing 224 n n C3 H32 MYR sing 225 n n C4 C5 MYR sing 226 n n C4 H41 MYR sing 227 n n C4 H42 MYR sing 228 n n C5 C6 MYR sing 229 n n C5 H51 MYR sing 230 n n C5 H52 MYR sing 231 n n C6 C7 MYR sing 232 n n C6 H61 MYR sing 233 n n C6 H62 MYR sing 234 n n C7 C8 MYR sing 235 n n C7 H71 MYR sing 236 n n C7 H72 MYR sing 237 n n C8 C9 MYR sing 238 n n C8 H81 MYR sing 239 n n C8 H82 MYR sing 240 n n C9 C10 MYR sing 241 n n C9 H91 MYR sing 242 n n C9 H92 MYR sing 243 n n C10 C11 MYR sing 244 n n C10 H101 MYR sing 245 n n C10 H102 MYR sing 246 n n C11 C12 MYR sing 247 n n C11 H111 MYR sing 248 n n C11 H112 MYR sing 249 n n C12 C13 MYR sing 250 n n C12 H121 MYR sing 251 n n C12 H122 MYR sing 252 n n C13 C14 MYR sing 253 n n C13 H131 MYR sing 254 n n C13 H132 MYR sing 255 n n C14 H141 MYR sing 256 n n C14 H142 MYR sing 257 n n C14 H143 MYR sing 258 n n # _atom_sites.entry_id 9LVY _atom_sites.fract_transf_matrix[1][1] 0.012309 _atom_sites.fract_transf_matrix[1][2] 0.007107 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 IPH B 1 101 22 IPH IPH . F 4 ZN B 1 102 30 ZN ZN . G 5 CL B 1 103 31 CL CL . H 6 MYR B 1 104 39 MYR MYR . I 3 IPH D 1 101 22 IPH IPH . J 4 ZN D 1 102 30 ZN ZN . K 5 CL D 1 103 31 CL CL . L 6 MYR D 1 104 39 MYR MYR . M 7 HOH B 1 201 2 HOH HOH . M 7 HOH B 2 202 3 HOH HOH . M 7 HOH B 3 203 1 HOH HOH . N 7 HOH C 1 101 4 HOH HOH . N 7 HOH C 2 102 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . L 6 -8.86 11.821 -37.559 0.37 105.52 ? C1 MYR 104 D 1 HETATM 2 O O1 MYR . . . L 6 -9.811 11.941 -38.36 0.37 103.93 ? O1 MYR 104 D 1 HETATM 3 C C2 MYR . . . L 6 -7.455 11.601 -38.064 0.37 100.14 ? C2 MYR 104 D 1 HETATM 4 C C3 MYR . . . L 6 -7.046 12.758 -38.967 0.37 93.21 ? C3 MYR 104 D 1 HETATM 5 C C4 MYR . . . L 6 -5.635 12.557 -39.512 0.37 87.59 ? C4 MYR 104 D 1 HETATM 6 C C5 MYR . . . L 6 -5.649 11.914 -40.893 0.37 84.23 ? C5 MYR 104 D 1 HETATM 7 C C6 MYR . . . L 6 -5.506 10.398 -40.827 0.37 82.92 ? C6 MYR 104 D 1 HETATM 8 C C7 MYR . . . L 6 -5.032 9.853 -42.168 0.37 83.64 ? C7 MYR 104 D 1 HETATM 9 C C8 MYR . . . L 6 -3.803 10.61 -42.661 0.37 83.1 ? C8 MYR 104 D 1 HETATM 10 C C9 MYR . . . L 6 -3.124 9.869 -43.805 0.37 86.24 ? C9 MYR 104 D 1 HETATM 11 C C10 MYR . . . L 6 -2.522 8.556 -43.325 0.37 83.18 ? C10 MYR 104 D 1 HETATM 12 C C11 MYR . . . L 6 -3.151 7.341 -43.992 0.37 84.44 ? C11 MYR 104 D 1 HETATM 13 C C12 MYR . . . L 6 -2.498 6.067 -43.471 0.37 83.19 ? C12 MYR 104 D 1 HETATM 14 C C13 MYR . . . L 6 -3.518 4.968 -43.194 0.37 81.55 ? C13 MYR 104 D 1 HETATM 15 C C14 MYR . . . L 6 -3.987 4.329 -44.499 0.37 83.07 ? C14 MYR 104 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #