data_9M3R # _model_server_result.job_id 9LLrc7wqymQjg8wHW1JlCw _model_server_result.datetime_utc '2025-07-12 17:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9m3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 9M3R # _exptl.entry_id 9M3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9M3R _cell.length_a 109.8 _cell.length_b 109.8 _cell.length_c 84.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9M3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OH _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 292 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id A1EQH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1EQH _struct_conn.ptnr2_auth_seq_id 406 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.482 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 189 n n C1 C2 GOL sing 190 n n C1 H11 GOL sing 191 n n C1 H12 GOL sing 192 n n O1 HO1 GOL sing 193 n n C2 O2 GOL sing 194 n n C2 C3 GOL sing 195 n n C2 H2 GOL sing 196 n n O2 HO2 GOL sing 197 n n C3 O3 GOL sing 198 n n C3 H31 GOL sing 199 n n C3 H32 GOL sing 200 n n O3 HO3 GOL sing 201 n n # _atom_sites.entry_id 9M3R _atom_sites.fract_transf_matrix[1][1] 0.009107 _atom_sites.fract_transf_matrix[1][2] 0.005258 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 3 TF3 A 1 402 501 TF3 TF3 . D 4 EDO A 1 403 601 EDO EDO . E 5 GOL A 1 404 701 GOL GOL . F 2 SO4 A 1 405 801 SO4 SO4 . G 6 A1EQH A 1 406 901 A1EQH L0R . H 7 HOH A 1 501 71 HOH HOH . H 7 HOH A 2 502 78 HOH HOH . H 7 HOH A 3 503 28 HOH HOH . H 7 HOH A 4 504 13 HOH HOH . H 7 HOH A 5 505 44 HOH HOH . H 7 HOH A 6 506 15 HOH HOH . H 7 HOH A 7 507 79 HOH HOH . H 7 HOH A 8 508 106 HOH HOH . H 7 HOH A 9 509 5 HOH HOH . H 7 HOH A 10 510 29 HOH HOH . H 7 HOH A 11 511 81 HOH HOH . H 7 HOH A 12 512 68 HOH HOH . H 7 HOH A 13 513 38 HOH HOH . H 7 HOH A 14 514 43 HOH HOH . H 7 HOH A 15 515 118 HOH HOH . H 7 HOH A 16 516 6 HOH HOH . H 7 HOH A 17 517 65 HOH HOH . H 7 HOH A 18 518 115 HOH HOH . H 7 HOH A 19 519 100 HOH HOH . H 7 HOH A 20 520 97 HOH HOH . H 7 HOH A 21 521 41 HOH HOH . H 7 HOH A 22 522 57 HOH HOH . H 7 HOH A 23 523 92 HOH HOH . H 7 HOH A 24 524 45 HOH HOH . H 7 HOH A 25 525 27 HOH HOH . H 7 HOH A 26 526 67 HOH HOH . H 7 HOH A 27 527 14 HOH HOH . H 7 HOH A 28 528 80 HOH HOH . H 7 HOH A 29 529 75 HOH HOH . H 7 HOH A 30 530 52 HOH HOH . H 7 HOH A 31 531 40 HOH HOH . H 7 HOH A 32 532 7 HOH HOH . H 7 HOH A 33 533 69 HOH HOH . H 7 HOH A 34 534 120 HOH HOH . H 7 HOH A 35 535 17 HOH HOH . H 7 HOH A 36 536 62 HOH HOH . H 7 HOH A 37 537 60 HOH HOH . H 7 HOH A 38 538 53 HOH HOH . H 7 HOH A 39 539 90 HOH HOH . H 7 HOH A 40 540 63 HOH HOH . H 7 HOH A 41 541 22 HOH HOH . H 7 HOH A 42 542 88 HOH HOH . H 7 HOH A 43 543 125 HOH HOH . H 7 HOH A 44 544 84 HOH HOH . H 7 HOH A 45 545 35 HOH HOH . H 7 HOH A 46 546 55 HOH HOH . H 7 HOH A 47 547 109 HOH HOH . H 7 HOH A 48 548 91 HOH HOH . H 7 HOH A 49 549 72 HOH HOH . H 7 HOH A 50 550 16 HOH HOH . H 7 HOH A 51 551 50 HOH HOH . H 7 HOH A 52 552 77 HOH HOH . H 7 HOH A 53 553 20 HOH HOH . H 7 HOH A 54 554 26 HOH HOH . H 7 HOH A 55 555 23 HOH HOH . H 7 HOH A 56 556 116 HOH HOH . H 7 HOH A 57 557 51 HOH HOH . H 7 HOH A 58 558 93 HOH HOH . H 7 HOH A 59 559 21 HOH HOH . H 7 HOH A 60 560 54 HOH HOH . H 7 HOH A 61 561 102 HOH HOH . H 7 HOH A 62 562 114 HOH HOH . H 7 HOH A 63 563 83 HOH HOH . H 7 HOH A 64 564 34 HOH HOH . H 7 HOH A 65 565 117 HOH HOH . H 7 HOH A 66 566 11 HOH HOH . H 7 HOH A 67 567 64 HOH HOH . H 7 HOH A 68 568 123 HOH HOH . H 7 HOH A 69 569 58 HOH HOH . H 7 HOH A 70 570 2 HOH HOH . H 7 HOH A 71 571 18 HOH HOH . H 7 HOH A 72 572 42 HOH HOH . H 7 HOH A 73 573 107 HOH HOH . H 7 HOH A 74 574 32 HOH HOH . H 7 HOH A 75 575 108 HOH HOH . H 7 HOH A 76 576 39 HOH HOH . H 7 HOH A 77 577 119 HOH HOH . H 7 HOH A 78 578 121 HOH HOH . H 7 HOH A 79 579 86 HOH HOH . H 7 HOH A 80 580 61 HOH HOH . H 7 HOH A 81 581 30 HOH HOH . H 7 HOH A 82 582 48 HOH HOH . H 7 HOH A 83 583 112 HOH HOH . H 7 HOH A 84 584 12 HOH HOH . H 7 HOH A 85 585 59 HOH HOH . H 7 HOH A 86 586 96 HOH HOH . H 7 HOH A 87 587 76 HOH HOH . H 7 HOH A 88 588 9 HOH HOH . H 7 HOH A 89 589 122 HOH HOH . H 7 HOH A 90 590 1 HOH HOH . H 7 HOH A 91 591 94 HOH HOH . H 7 HOH A 92 592 4 HOH HOH . H 7 HOH A 93 593 36 HOH HOH . H 7 HOH A 94 594 47 HOH HOH . H 7 HOH A 95 595 8 HOH HOH . H 7 HOH A 96 596 70 HOH HOH . H 7 HOH A 97 597 113 HOH HOH . H 7 HOH A 98 598 89 HOH HOH . H 7 HOH A 99 599 37 HOH HOH . H 7 HOH A 100 600 73 HOH HOH . H 7 HOH A 101 601 87 HOH HOH . H 7 HOH A 102 602 104 HOH HOH . H 7 HOH A 103 603 98 HOH HOH . H 7 HOH A 104 604 126 HOH HOH . H 7 HOH A 105 605 101 HOH HOH . H 7 HOH A 106 606 103 HOH HOH . H 7 HOH A 107 607 111 HOH HOH . H 7 HOH A 108 608 24 HOH HOH . H 7 HOH A 109 609 33 HOH HOH . H 7 HOH A 110 610 95 HOH HOH . H 7 HOH A 111 611 110 HOH HOH . H 7 HOH A 112 612 46 HOH HOH . H 7 HOH A 113 613 19 HOH HOH . H 7 HOH A 114 614 56 HOH HOH . H 7 HOH A 115 615 124 HOH HOH . H 7 HOH A 116 616 25 HOH HOH . H 7 HOH A 117 617 3 HOH HOH . H 7 HOH A 118 618 105 HOH HOH . H 7 HOH A 119 619 74 HOH HOH . H 7 HOH A 120 620 10 HOH HOH . H 7 HOH A 121 621 66 HOH HOH . H 7 HOH A 122 622 99 HOH HOH . H 7 HOH A 123 623 31 HOH HOH . H 7 HOH A 124 624 85 HOH HOH . H 7 HOH A 125 625 49 HOH HOH . H 7 HOH A 126 626 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -39.356 35.153 -25.49 1 84.49 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 5 -40.637 34.731 -25.087 1 76.66 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 5 -38.326 34.605 -24.454 1 85.2 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 5 -38.03 35.547 -23.49 1 98.78 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 5 -37.057 34.203 -25.266 1 90.09 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 5 -36.701 32.909 -24.862 1 90.67 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #