data_9M3R # _model_server_result.job_id PFaq916qnmLUtJKku0dRPg _model_server_result.datetime_utc '2025-07-12 16:56:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9m3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 9M3R # _exptl.entry_id 9M3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.439 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[4-[4-(ethylamino)-6-fluoranyl-2-oxidanylidene-3H-benzimidazol-1-yl]phenoxy]benzenesulfonyl fluoride' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9M3R _cell.length_a 109.8 _cell.length_b 109.8 _cell.length_c 84.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9M3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.8 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OH _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 292 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 308 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id A1EQH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1EQH _struct_conn.ptnr2_auth_seq_id 406 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.482 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H17 F2 N3 O4 S' _chem_comp.formula_weight 445.439 _chem_comp.id A1EQH _chem_comp.mon_nstd_flag . _chem_comp.name '3-[4-[4-(ethylamino)-6-fluoranyl-2-oxidanylidene-3H-benzimidazol-1-yl]phenoxy]benzenesulfonyl fluoride' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O S A1EQH doub 1 n n S C A1EQH sing 2 n n S O1 A1EQH doub 3 n n C20 C A1EQH doub 4 n y C20 C19 A1EQH sing 5 n y C C1 A1EQH sing 6 n y C19 C18 A1EQH doub 7 n y C1 C2 A1EQH doub 8 n y C18 C2 A1EQH sing 9 n y C2 O2 A1EQH sing 10 n n O2 C3 A1EQH sing 11 n n C3 C17 A1EQH doub 12 n y C3 C4 A1EQH sing 13 n y C17 C16 A1EQH sing 14 n y F C13 A1EQH sing 15 n n C4 C5 A1EQH doub 16 n y C16 C6 A1EQH doub 17 n y C14 C13 A1EQH doub 18 n y C14 C15 A1EQH sing 19 n y C13 C12 A1EQH sing 20 n y C5 C6 A1EQH sing 21 n y C6 N A1EQH sing 22 n n C15 N A1EQH sing 23 n n C15 C8 A1EQH doub 24 n y C12 C9 A1EQH doub 25 n y N C7 A1EQH sing 26 n n C8 C9 A1EQH sing 27 n y C8 N1 A1EQH sing 28 n n C9 N2 A1EQH sing 29 n n C7 O3 A1EQH doub 30 n n C7 N1 A1EQH sing 31 n n N2 C10 A1EQH sing 32 n n C10 C11 A1EQH sing 33 n n C10 H1 A1EQH sing 34 n n C10 H2 A1EQH sing 35 n n C11 H3 A1EQH sing 36 n n C11 H4 A1EQH sing 37 n n C11 H5 A1EQH sing 38 n n C16 H6 A1EQH sing 39 n n C17 H7 A1EQH sing 40 n n C18 H8 A1EQH sing 41 n n C19 H9 A1EQH sing 42 n n C20 H10 A1EQH sing 43 n n C1 H12 A1EQH sing 44 n n C12 H13 A1EQH sing 45 n n C14 H14 A1EQH sing 46 n n C4 H15 A1EQH sing 47 n n C5 H16 A1EQH sing 48 n n N1 H17 A1EQH sing 49 n n N2 H18 A1EQH sing 50 n n S F1 A1EQH sing 51 n n # _atom_sites.entry_id 9M3R _atom_sites.fract_transf_matrix[1][1] 0.009107 _atom_sites.fract_transf_matrix[1][2] 0.005258 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 3 TF3 A 1 402 501 TF3 TF3 . D 4 EDO A 1 403 601 EDO EDO . E 5 GOL A 1 404 701 GOL GOL . F 2 SO4 A 1 405 801 SO4 SO4 . G 6 A1EQH A 1 406 901 A1EQH L0R . H 7 HOH A 1 501 71 HOH HOH . H 7 HOH A 2 502 78 HOH HOH . H 7 HOH A 3 503 28 HOH HOH . H 7 HOH A 4 504 13 HOH HOH . H 7 HOH A 5 505 44 HOH HOH . H 7 HOH A 6 506 15 HOH HOH . H 7 HOH A 7 507 79 HOH HOH . H 7 HOH A 8 508 106 HOH HOH . H 7 HOH A 9 509 5 HOH HOH . H 7 HOH A 10 510 29 HOH HOH . H 7 HOH A 11 511 81 HOH HOH . H 7 HOH A 12 512 68 HOH HOH . H 7 HOH A 13 513 38 HOH HOH . H 7 HOH A 14 514 43 HOH HOH . H 7 HOH A 15 515 118 HOH HOH . H 7 HOH A 16 516 6 HOH HOH . H 7 HOH A 17 517 65 HOH HOH . H 7 HOH A 18 518 115 HOH HOH . H 7 HOH A 19 519 100 HOH HOH . H 7 HOH A 20 520 97 HOH HOH . H 7 HOH A 21 521 41 HOH HOH . H 7 HOH A 22 522 57 HOH HOH . H 7 HOH A 23 523 92 HOH HOH . H 7 HOH A 24 524 45 HOH HOH . H 7 HOH A 25 525 27 HOH HOH . H 7 HOH A 26 526 67 HOH HOH . H 7 HOH A 27 527 14 HOH HOH . H 7 HOH A 28 528 80 HOH HOH . H 7 HOH A 29 529 75 HOH HOH . H 7 HOH A 30 530 52 HOH HOH . H 7 HOH A 31 531 40 HOH HOH . H 7 HOH A 32 532 7 HOH HOH . H 7 HOH A 33 533 69 HOH HOH . H 7 HOH A 34 534 120 HOH HOH . H 7 HOH A 35 535 17 HOH HOH . H 7 HOH A 36 536 62 HOH HOH . H 7 HOH A 37 537 60 HOH HOH . H 7 HOH A 38 538 53 HOH HOH . H 7 HOH A 39 539 90 HOH HOH . H 7 HOH A 40 540 63 HOH HOH . H 7 HOH A 41 541 22 HOH HOH . H 7 HOH A 42 542 88 HOH HOH . H 7 HOH A 43 543 125 HOH HOH . H 7 HOH A 44 544 84 HOH HOH . H 7 HOH A 45 545 35 HOH HOH . H 7 HOH A 46 546 55 HOH HOH . H 7 HOH A 47 547 109 HOH HOH . H 7 HOH A 48 548 91 HOH HOH . H 7 HOH A 49 549 72 HOH HOH . H 7 HOH A 50 550 16 HOH HOH . H 7 HOH A 51 551 50 HOH HOH . H 7 HOH A 52 552 77 HOH HOH . H 7 HOH A 53 553 20 HOH HOH . H 7 HOH A 54 554 26 HOH HOH . H 7 HOH A 55 555 23 HOH HOH . H 7 HOH A 56 556 116 HOH HOH . H 7 HOH A 57 557 51 HOH HOH . H 7 HOH A 58 558 93 HOH HOH . H 7 HOH A 59 559 21 HOH HOH . H 7 HOH A 60 560 54 HOH HOH . H 7 HOH A 61 561 102 HOH HOH . H 7 HOH A 62 562 114 HOH HOH . H 7 HOH A 63 563 83 HOH HOH . H 7 HOH A 64 564 34 HOH HOH . H 7 HOH A 65 565 117 HOH HOH . H 7 HOH A 66 566 11 HOH HOH . H 7 HOH A 67 567 64 HOH HOH . H 7 HOH A 68 568 123 HOH HOH . H 7 HOH A 69 569 58 HOH HOH . H 7 HOH A 70 570 2 HOH HOH . H 7 HOH A 71 571 18 HOH HOH . H 7 HOH A 72 572 42 HOH HOH . H 7 HOH A 73 573 107 HOH HOH . H 7 HOH A 74 574 32 HOH HOH . H 7 HOH A 75 575 108 HOH HOH . H 7 HOH A 76 576 39 HOH HOH . H 7 HOH A 77 577 119 HOH HOH . H 7 HOH A 78 578 121 HOH HOH . H 7 HOH A 79 579 86 HOH HOH . H 7 HOH A 80 580 61 HOH HOH . H 7 HOH A 81 581 30 HOH HOH . H 7 HOH A 82 582 48 HOH HOH . H 7 HOH A 83 583 112 HOH HOH . H 7 HOH A 84 584 12 HOH HOH . H 7 HOH A 85 585 59 HOH HOH . H 7 HOH A 86 586 96 HOH HOH . H 7 HOH A 87 587 76 HOH HOH . H 7 HOH A 88 588 9 HOH HOH . H 7 HOH A 89 589 122 HOH HOH . H 7 HOH A 90 590 1 HOH HOH . H 7 HOH A 91 591 94 HOH HOH . H 7 HOH A 92 592 4 HOH HOH . H 7 HOH A 93 593 36 HOH HOH . H 7 HOH A 94 594 47 HOH HOH . H 7 HOH A 95 595 8 HOH HOH . H 7 HOH A 96 596 70 HOH HOH . H 7 HOH A 97 597 113 HOH HOH . H 7 HOH A 98 598 89 HOH HOH . H 7 HOH A 99 599 37 HOH HOH . H 7 HOH A 100 600 73 HOH HOH . H 7 HOH A 101 601 87 HOH HOH . H 7 HOH A 102 602 104 HOH HOH . H 7 HOH A 103 603 98 HOH HOH . H 7 HOH A 104 604 126 HOH HOH . H 7 HOH A 105 605 101 HOH HOH . H 7 HOH A 106 606 103 HOH HOH . H 7 HOH A 107 607 111 HOH HOH . H 7 HOH A 108 608 24 HOH HOH . H 7 HOH A 109 609 33 HOH HOH . H 7 HOH A 110 610 95 HOH HOH . H 7 HOH A 111 611 110 HOH HOH . H 7 HOH A 112 612 46 HOH HOH . H 7 HOH A 113 613 19 HOH HOH . H 7 HOH A 114 614 56 HOH HOH . H 7 HOH A 115 615 124 HOH HOH . H 7 HOH A 116 616 25 HOH HOH . H 7 HOH A 117 617 3 HOH HOH . H 7 HOH A 118 618 105 HOH HOH . H 7 HOH A 119 619 74 HOH HOH . H 7 HOH A 120 620 10 HOH HOH . H 7 HOH A 121 621 66 HOH HOH . H 7 HOH A 122 622 99 HOH HOH . H 7 HOH A 123 623 31 HOH HOH . H 7 HOH A 124 624 85 HOH HOH . H 7 HOH A 125 625 49 HOH HOH . H 7 HOH A 126 626 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1EQH . . . G 6 -56.926 10.38 -14.108 1 41.5 ? C10 A1EQH 406 A 1 HETATM 2 C C11 A1EQH . . . G 6 -56.644 9.471 -12.903 1 38.98 ? C11 A1EQH 406 A 1 HETATM 3 C C13 A1EQH . . . G 6 -58.85 11.659 -17.704 1 42.01 ? C13 A1EQH 406 A 1 HETATM 4 C C15 A1EQH . . . G 6 -60.967 11.26 -16.728 1 39.81 ? C15 A1EQH 406 A 1 HETATM 5 C C16 A1EQH . . . G 6 -63.381 12.702 -18.055 1 41.09 ? C16 A1EQH 406 A 1 HETATM 6 C C17 A1EQH . . . G 6 -64.39 13.026 -18.941 1 42.75 ? C17 A1EQH 406 A 1 HETATM 7 C C18 A1EQH . . . G 6 -65.639 10.911 -21.778 1 43.1 ? C18 A1EQH 406 A 1 HETATM 8 C C19 A1EQH . . . G 6 -65.858 10.276 -22.992 1 47.31 ? C19 A1EQH 406 A 1 HETATM 9 C C20 A1EQH . . . G 6 -66.996 10.541 -23.737 1 50.09 ? C20 A1EQH 406 A 1 HETATM 10 N N A1EQH . . . G 6 -62.336 11.134 -16.503 1 40.08 ? N A1EQH 406 A 1 HETATM 11 C C A1EQH . . . G 6 -67.93 11.438 -23.237 1 56.88 ? C A1EQH 406 A 1 HETATM 12 O O A1EQH . . . G 6 -69.569 10.929 -25.163 1 61.6 ? O A1EQH 406 A 1 HETATM 13 C C1 A1EQH . . . G 6 -67.737 12.059 -22.014 1 49.65 ? C1 A1EQH 406 A 1 HETATM 14 C C12 A1EQH . . . G 6 -58.188 11.263 -16.562 1 42.88 ? C12 A1EQH 406 A 1 HETATM 15 C C14 A1EQH . . . G 6 -60.225 11.674 -17.835 1 39.06 ? C14 A1EQH 406 A 1 HETATM 16 C C2 A1EQH . . . G 6 -66.588 11.792 -21.292 1 51.37 ? C2 A1EQH 406 A 1 HETATM 17 C C3 A1EQH . . . G 6 -65.399 12.113 -19.198 1 45.07 ? C3 A1EQH 406 A 1 HETATM 18 C C4 A1EQH . . . G 6 -65.409 10.883 -18.562 1 43.13 ? C4 A1EQH 406 A 1 HETATM 19 C C5 A1EQH . . . G 6 -64.401 10.564 -17.674 1 44.28 ? C5 A1EQH 406 A 1 HETATM 20 C C6 A1EQH . . . G 6 -63.382 11.466 -17.43 1 43.05 ? C6 A1EQH 406 A 1 HETATM 21 C C7 A1EQH . . . G 6 -62.562 10.663 -15.202 1 37.55 ? C7 A1EQH 406 A 1 HETATM 22 C C8 A1EQH . . . G 6 -60.347 10.849 -15.577 1 37.98 ? C8 A1EQH 406 A 1 HETATM 23 C C9 A1EQH . . . G 6 -58.956 10.857 -15.477 1 38.98 ? C9 A1EQH 406 A 1 HETATM 24 F F A1EQH . . . G 6 -58.103 12.07 -18.758 1 41.88 ? F A1EQH 406 A 1 HETATM 25 N N1 A1EQH . . . G 6 -61.322 10.494 -14.652 1 35.57 ? N1 A1EQH 406 A 1 HETATM 26 N N2 A1EQH . . . G 6 -58.381 10.446 -14.309 1 41.49 ? N2 A1EQH 406 A 1 HETATM 27 O O1 A1EQH . . . G 6 -70.392 11.934 -23.145 1 62.49 ? O1 A1EQH 406 A 1 HETATM 28 O O2 A1EQH . . . G 6 -66.432 12.449 -20.073 1 44.71 ? O2 A1EQH 406 A 1 HETATM 29 O O3 A1EQH . . . G 6 -63.639 10.426 -14.69 1 43.43 ? O3 A1EQH 406 A 1 HETATM 30 S S A1EQH . . . G 6 -69.34 11.824 -24.08 1 69.41 ? S A1EQH 406 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #