data_9M3U # _model_server_result.job_id c5jg6tgVsC-4DET05ACJiA _model_server_result.datetime_utc '2025-07-09 16:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9m3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 9M3U # _exptl.entry_id 9M3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.567 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-cyano-N-[(3R)-1-[(3S)-3-ethyl-7-(ethylamino)-5-fluoranyl-2-oxidanylidene-1H-indol-3-yl]piperidin-3-yl]-2-azaspiro[3.3]heptane-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9M3U _cell.length_a 110.63 _cell.length_b 110.63 _cell.length_c 84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9M3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -110.63 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H33 F N6 O2' _chem_comp.formula_weight 468.567 _chem_comp.id A1EQJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-cyano-N-[(3R)-1-[(3S)-3-ethyl-7-(ethylamino)-5-fluoranyl-2-oxidanylidene-1H-indol-3-yl]piperidin-3-yl]-2-azaspiro[3.3]heptane-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N34 C33 A1EQJ trip 1 n n C33 N29 A1EQJ sing 2 n n N29 C28 A1EQJ sing 3 n n N29 C30 A1EQJ sing 4 n n C28 C27 A1EQJ sing 5 n n C30 C27 A1EQJ sing 6 n n C27 C24 A1EQJ sing 7 n n C27 C26 A1EQJ sing 8 n n C24 C25 A1EQJ sing 9 n n C26 C25 A1EQJ sing 10 n n C25 C31 A1EQJ sing 11 n n C31 O32 A1EQJ doub 12 n n C31 N23 A1EQJ sing 13 n n N23 C21 A1EQJ sing 14 n n F7 C6 A1EQJ sing 15 n n C22 C21 A1EQJ sing 16 n n C22 N17 A1EQJ sing 17 n n C21 C20 A1EQJ sing 18 n n C8 C6 A1EQJ doub 19 n y C8 C9 A1EQJ sing 20 n y C15 C16 A1EQJ sing 21 n n C15 C10 A1EQJ sing 22 n n C6 C5 A1EQJ sing 23 n y C20 C19 A1EQJ sing 24 n n C9 C10 A1EQJ sing 25 n n C9 C13 A1EQJ doub 26 n y N17 C10 A1EQJ sing 27 n n N17 C18 A1EQJ sing 28 n n C10 C11 A1EQJ sing 29 n n C5 C1 A1EQJ doub 30 n y C18 C19 A1EQJ sing 31 n n C13 C1 A1EQJ sing 32 n y C13 N14 A1EQJ sing 33 n n C1 N2 A1EQJ sing 34 n n C11 O12 A1EQJ doub 35 n n C11 N14 A1EQJ sing 36 n n N2 C3 A1EQJ sing 37 n n C3 C4 A1EQJ sing 38 n n C15 H1 A1EQJ sing 39 n n C15 H2 A1EQJ sing 40 n n C16 H3 A1EQJ sing 41 n n C16 H4 A1EQJ sing 42 n n C16 H5 A1EQJ sing 43 n n C18 H6 A1EQJ sing 44 n n C18 H7 A1EQJ sing 45 n n C19 H8 A1EQJ sing 46 n n C19 H9 A1EQJ sing 47 n n C20 H10 A1EQJ sing 48 n n C20 H11 A1EQJ sing 49 n n C21 H12 A1EQJ sing 50 n n C22 H13 A1EQJ sing 51 n n C22 H14 A1EQJ sing 52 n n C24 H15 A1EQJ sing 53 n n C24 H16 A1EQJ sing 54 n n C25 H17 A1EQJ sing 55 n n C26 H18 A1EQJ sing 56 n n C26 H19 A1EQJ sing 57 n n C28 H20 A1EQJ sing 58 n n C28 H21 A1EQJ sing 59 n n C3 H22 A1EQJ sing 60 n n C3 H23 A1EQJ sing 61 n n C30 H24 A1EQJ sing 62 n n C30 H25 A1EQJ sing 63 n n C4 H26 A1EQJ sing 64 n n C4 H27 A1EQJ sing 65 n n C4 H28 A1EQJ sing 66 n n C5 H29 A1EQJ sing 67 n n C8 H30 A1EQJ sing 68 n n N14 H31 A1EQJ sing 69 n n N2 H33 A1EQJ sing 70 n n N23 H34 A1EQJ sing 71 n n # _atom_sites.entry_id 9M3U _atom_sites.fract_transf_matrix[1][1] 0.009039 _atom_sites.fract_transf_matrix[1][2] 0.005219 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 2 EDO A 1 402 501 EDO EDO . D 2 EDO A 1 403 601 EDO EDO . E 3 TF3 A 1 404 701 TF3 TF3 . F 4 GOL A 1 405 801 GOL GOL . G 5 A1EQJ A 1 406 901 A1EQJ L0R . H 2 EDO A 1 407 1001 EDO EDO . I 6 HOH A 1 501 131 HOH HOH . I 6 HOH A 2 502 115 HOH HOH . I 6 HOH A 3 503 84 HOH HOH . I 6 HOH A 4 504 26 HOH HOH . I 6 HOH A 5 505 54 HOH HOH . I 6 HOH A 6 506 138 HOH HOH . I 6 HOH A 7 507 45 HOH HOH . I 6 HOH A 8 508 108 HOH HOH . I 6 HOH A 9 509 4 HOH HOH . I 6 HOH A 10 510 46 HOH HOH . I 6 HOH A 11 511 111 HOH HOH . I 6 HOH A 12 512 64 HOH HOH . I 6 HOH A 13 513 2 HOH HOH . I 6 HOH A 14 514 32 HOH HOH . I 6 HOH A 15 515 1 HOH HOH . I 6 HOH A 16 516 143 HOH HOH . I 6 HOH A 17 517 76 HOH HOH . I 6 HOH A 18 518 154 HOH HOH . I 6 HOH A 19 519 71 HOH HOH . I 6 HOH A 20 520 52 HOH HOH . I 6 HOH A 21 521 161 HOH HOH . I 6 HOH A 22 522 97 HOH HOH . I 6 HOH A 23 523 78 HOH HOH . I 6 HOH A 24 524 133 HOH HOH . I 6 HOH A 25 525 99 HOH HOH . I 6 HOH A 26 526 51 HOH HOH . I 6 HOH A 27 527 18 HOH HOH . I 6 HOH A 28 528 6 HOH HOH . I 6 HOH A 29 529 36 HOH HOH . I 6 HOH A 30 530 43 HOH HOH . I 6 HOH A 31 531 67 HOH HOH . I 6 HOH A 32 532 77 HOH HOH . I 6 HOH A 33 533 16 HOH HOH . I 6 HOH A 34 534 73 HOH HOH . I 6 HOH A 35 535 162 HOH HOH . I 6 HOH A 36 536 5 HOH HOH . I 6 HOH A 37 537 24 HOH HOH . I 6 HOH A 38 538 146 HOH HOH . I 6 HOH A 39 539 44 HOH HOH . I 6 HOH A 40 540 41 HOH HOH . I 6 HOH A 41 541 7 HOH HOH . I 6 HOH A 42 542 100 HOH HOH . I 6 HOH A 43 543 42 HOH HOH . I 6 HOH A 44 544 59 HOH HOH . I 6 HOH A 45 545 20 HOH HOH . I 6 HOH A 46 546 135 HOH HOH . I 6 HOH A 47 547 55 HOH HOH . I 6 HOH A 48 548 21 HOH HOH . I 6 HOH A 49 549 23 HOH HOH . I 6 HOH A 50 550 106 HOH HOH . I 6 HOH A 51 551 22 HOH HOH . I 6 HOH A 52 552 148 HOH HOH . I 6 HOH A 53 553 126 HOH HOH . I 6 HOH A 54 554 15 HOH HOH . I 6 HOH A 55 555 132 HOH HOH . I 6 HOH A 56 556 63 HOH HOH . I 6 HOH A 57 557 53 HOH HOH . I 6 HOH A 58 558 50 HOH HOH . I 6 HOH A 59 559 33 HOH HOH . I 6 HOH A 60 560 152 HOH HOH . I 6 HOH A 61 561 8 HOH HOH . I 6 HOH A 62 562 35 HOH HOH . I 6 HOH A 63 563 48 HOH HOH . I 6 HOH A 64 564 10 HOH HOH . I 6 HOH A 65 565 118 HOH HOH . I 6 HOH A 66 566 75 HOH HOH . I 6 HOH A 67 567 74 HOH HOH . I 6 HOH A 68 568 30 HOH HOH . I 6 HOH A 69 569 155 HOH HOH . I 6 HOH A 70 570 69 HOH HOH . I 6 HOH A 71 571 47 HOH HOH . I 6 HOH A 72 572 151 HOH HOH . I 6 HOH A 73 573 14 HOH HOH . I 6 HOH A 74 574 39 HOH HOH . I 6 HOH A 75 575 130 HOH HOH . I 6 HOH A 76 576 34 HOH HOH . I 6 HOH A 77 577 13 HOH HOH . I 6 HOH A 78 578 121 HOH HOH . I 6 HOH A 79 579 66 HOH HOH . I 6 HOH A 80 580 129 HOH HOH . I 6 HOH A 81 581 49 HOH HOH . I 6 HOH A 82 582 19 HOH HOH . I 6 HOH A 83 583 56 HOH HOH . I 6 HOH A 84 584 139 HOH HOH . I 6 HOH A 85 585 156 HOH HOH . I 6 HOH A 86 586 68 HOH HOH . I 6 HOH A 87 587 58 HOH HOH . I 6 HOH A 88 588 70 HOH HOH . I 6 HOH A 89 589 12 HOH HOH . I 6 HOH A 90 590 149 HOH HOH . I 6 HOH A 91 591 85 HOH HOH . I 6 HOH A 92 592 144 HOH HOH . I 6 HOH A 93 593 119 HOH HOH . I 6 HOH A 94 594 160 HOH HOH . I 6 HOH A 95 595 88 HOH HOH . I 6 HOH A 96 596 103 HOH HOH . I 6 HOH A 97 597 31 HOH HOH . I 6 HOH A 98 598 136 HOH HOH . I 6 HOH A 99 599 87 HOH HOH . I 6 HOH A 100 600 122 HOH HOH . I 6 HOH A 101 601 116 HOH HOH . I 6 HOH A 102 602 117 HOH HOH . I 6 HOH A 103 603 61 HOH HOH . I 6 HOH A 104 604 25 HOH HOH . I 6 HOH A 105 605 96 HOH HOH . I 6 HOH A 106 606 89 HOH HOH . I 6 HOH A 107 607 107 HOH HOH . I 6 HOH A 108 608 27 HOH HOH . I 6 HOH A 109 609 159 HOH HOH . I 6 HOH A 110 610 3 HOH HOH . I 6 HOH A 111 611 142 HOH HOH . I 6 HOH A 112 612 105 HOH HOH . I 6 HOH A 113 613 86 HOH HOH . I 6 HOH A 114 614 38 HOH HOH . I 6 HOH A 115 615 125 HOH HOH . I 6 HOH A 116 616 141 HOH HOH . I 6 HOH A 117 617 29 HOH HOH . I 6 HOH A 118 618 57 HOH HOH . I 6 HOH A 119 619 134 HOH HOH . I 6 HOH A 120 620 127 HOH HOH . I 6 HOH A 121 621 112 HOH HOH . I 6 HOH A 122 622 153 HOH HOH . I 6 HOH A 123 623 17 HOH HOH . I 6 HOH A 124 624 37 HOH HOH . I 6 HOH A 125 625 11 HOH HOH . I 6 HOH A 126 626 102 HOH HOH . I 6 HOH A 127 627 91 HOH HOH . I 6 HOH A 128 628 9 HOH HOH . I 6 HOH A 129 629 81 HOH HOH . I 6 HOH A 130 630 98 HOH HOH . I 6 HOH A 131 631 92 HOH HOH . I 6 HOH A 132 632 28 HOH HOH . I 6 HOH A 133 633 93 HOH HOH . I 6 HOH A 134 634 65 HOH HOH . I 6 HOH A 135 635 80 HOH HOH . I 6 HOH A 136 636 150 HOH HOH . I 6 HOH A 137 637 140 HOH HOH . I 6 HOH A 138 638 60 HOH HOH . I 6 HOH A 139 639 82 HOH HOH . I 6 HOH A 140 640 94 HOH HOH . I 6 HOH A 141 641 72 HOH HOH . I 6 HOH A 142 642 124 HOH HOH . I 6 HOH A 143 643 109 HOH HOH . I 6 HOH A 144 644 123 HOH HOH . I 6 HOH A 145 645 95 HOH HOH . I 6 HOH A 146 646 158 HOH HOH . I 6 HOH A 147 647 83 HOH HOH . I 6 HOH A 148 648 147 HOH HOH . I 6 HOH A 149 649 101 HOH HOH . I 6 HOH A 150 650 40 HOH HOH . I 6 HOH A 151 651 128 HOH HOH . I 6 HOH A 152 652 114 HOH HOH . I 6 HOH A 153 653 90 HOH HOH . I 6 HOH A 154 654 62 HOH HOH . I 6 HOH A 155 655 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1EQJ . . . G 5 -62.877 11 -17.369 1 45.75 ? C10 A1EQJ 406 A 1 HETATM 2 C C11 A1EQJ . . . G 5 -63.01 10.444 -15.926 1 41.94 ? C11 A1EQJ 406 A 1 HETATM 3 O O12 A1EQJ . . . G 5 -64.043 10.119 -15.348 1 45.17 ? O12 A1EQJ 406 A 1 HETATM 4 C C13 A1EQJ . . . G 5 -60.759 10.842 -16.189 1 37.96 ? C13 A1EQJ 406 A 1 HETATM 5 C C15 A1EQJ . . . G 5 -63.355 9.976 -18.431 1 40.49 ? C15 A1EQJ 406 A 1 HETATM 6 C C16 A1EQJ . . . G 5 -62.65 8.605 -18.37 1 42.48 ? C16 A1EQJ 406 A 1 HETATM 7 C C18 A1EQJ . . . G 5 -63.212 13.478 -16.496 1 48.13 ? C18 A1EQJ 406 A 1 HETATM 8 C C19 A1EQJ . . . G 5 -64.31 14.579 -16.375 1 48.44 ? C19 A1EQJ 406 A 1 HETATM 9 C C20 A1EQJ . . . G 5 -64.541 15.257 -17.712 1 51.16 ? C20 A1EQJ 406 A 1 HETATM 10 C C21 A1EQJ . . . G 5 -65.035 14.185 -18.676 1 53.53 ? C21 A1EQJ 406 A 1 HETATM 11 C C22 A1EQJ . . . G 5 -64 12.974 -18.772 1 52.5 ? C22 A1EQJ 406 A 1 HETATM 12 C C24 A1EQJ . . . G 5 -66.639 14.513 -23.318 1 61.34 ? C24 A1EQJ 406 A 1 HETATM 13 C C25 A1EQJ . . . G 5 -66.028 15.322 -22.15 1 60.28 ? C25 A1EQJ 406 A 1 HETATM 14 C C26 A1EQJ . . . G 5 -67.003 16.477 -22.452 1 63.73 ? C26 A1EQJ 406 A 1 HETATM 15 C C27 A1EQJ . . . G 5 -67.336 15.793 -23.781 1 66.76 ? C27 A1EQJ 406 A 1 HETATM 16 C C28 A1EQJ . . . G 5 -66.915 16.455 -25.117 1 64.99 ? C28 A1EQJ 406 A 1 HETATM 17 C C1 A1EQJ . . . G 5 -59.374 10.954 -15.954 1 37.27 ? C1 A1EQJ 406 A 1 HETATM 18 C C3 A1EQJ . . . G 5 -57.396 10.49 -14.57 1 35.83 ? C3 A1EQJ 406 A 1 HETATM 19 C C30 A1EQJ . . . G 5 -68.795 15.763 -24.27 1 67.46 ? C30 A1EQJ 406 A 1 HETATM 20 C C31 A1EQJ . . . G 5 -66.207 14.711 -20.811 1 57.34 ? C31 A1EQJ 406 A 1 HETATM 21 C C33 A1EQJ . . . G 5 -68.824 16.391 -26.661 1 71.69 ? C33 A1EQJ 406 A 1 HETATM 22 C C4 A1EQJ . . . G 5 -57.186 9.633 -13.3 1 38.94 ? C4 A1EQJ 406 A 1 HETATM 23 C C5 A1EQJ . . . G 5 -58.559 11.408 -16.988 1 38.54 ? C5 A1EQJ 406 A 1 HETATM 24 C C6 A1EQJ . . . G 5 -59.132 11.745 -18.2 1 38.75 ? C6 A1EQJ 406 A 1 HETATM 25 C C8 A1EQJ . . . G 5 -60.524 11.656 -18.472 1 41.58 ? C8 A1EQJ 406 A 1 HETATM 26 C C9 A1EQJ . . . G 5 -61.34 11.193 -17.427 1 42.07 ? C9 A1EQJ 406 A 1 HETATM 27 F F7 A1EQJ . . . G 5 -58.296 12.183 -19.15 1 44.26 ? F7 A1EQJ 406 A 1 HETATM 28 N N14 A1EQJ . . . G 5 -61.751 10.4 -15.29 1 36.28 ? N14 A1EQJ 406 A 1 HETATM 29 N N17 A1EQJ . . . G 5 -63.692 12.36 -17.42 1 51.77 ? N17 A1EQJ 406 A 1 HETATM 30 N N2 A1EQJ . . . G 5 -58.863 10.605 -14.718 1 37.28 ? N2 A1EQJ 406 A 1 HETATM 31 N N23 A1EQJ . . . G 5 -65.09 14.749 -20.015 1 53.18 ? N23 A1EQJ 406 A 1 HETATM 32 N N29 A1EQJ . . . G 5 -68.388 16.719 -25.391 1 69.34 ? N29 A1EQJ 406 A 1 HETATM 33 N N34 A1EQJ . . . G 5 -69.293 16.075 -27.682 1 72.64 ? N34 A1EQJ 406 A 1 HETATM 34 O O32 A1EQJ . . . G 5 -67.269 14.231 -20.438 1 60.47 ? O32 A1EQJ 406 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #