data_9M4W
#
_model_server_result.job_id            PyD6g3XKWUnKTjl9m5DfXg 
_model_server_result.datetime_utc      '2025-07-03 18:58:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9m4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":802}' 
#
_entry.id    9M4W 
#
_exptl.entry_id    9M4W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              734.039 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9M4W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9M4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 P N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 556 A CYS 553 1_555 A SG CYS 561 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 556 B CYS 553 1_555 B SG CYS 561 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 556 C CYS 553 1_555 C SG CYS 561 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 556 D CYS 553 1_555 D SG CYS 561 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A ND1 HIS 175 A HIS 172 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A SG CYS 179 A CYS 176 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A SG CYS 181 A CYS 178 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 B ND1 HIS 175 B HIS 172 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc6 B SG CYS 179 B CYS 176 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc7 B SG CYS 181 B CYS 178 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc8 B SG CYS 184 B CYS 181 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc9 C ND1 HIS 175 C HIS 172 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc10 C SG CYS 179 C CYS 176 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 C SG CYS 181 C CYS 178 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc12 C SG CYS 184 C CYS 181 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc13 D ND1 HIS 175 D HIS 172 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc14 D SG CYS 179 D CYS 176 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc15 D SG CYS 181 D CYS 178 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc16 D SG CYS 184 D CYS 181 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
#
_chem_comp.formula           'C40 H80 N O8 P' 
_chem_comp.formula_weight    734.039 
_chem_comp.id                PTY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PTY sing 477 n n 
C1 C6 PTY sing 478 n n 
C1 HC11 PTY sing 479 n n 
C1 HC12 PTY sing 480 n n 
C2 C3 PTY sing 481 n n 
C2 N1 PTY sing 482 n n 
C2 HC21 PTY sing 483 n n 
C2 HC22 PTY sing 484 n n 
C3 O11 PTY sing 485 n n 
C3 HC31 PTY sing 486 n n 
C3 HC32 PTY sing 487 n n 
O4 C30 PTY sing 488 n n 
C5 C6 PTY sing 489 n n 
C5 O14 PTY sing 490 n n 
C5 HC51 PTY sing 491 n n 
C5 HC52 PTY sing 492 n n 
C6 O7 PTY sing 493 n n 
C6 HC6 PTY sing 494 n n 
O7 C8 PTY sing 495 n n 
C8 O10 PTY doub 496 n n 
C8 C11 PTY sing 497 n n 
C11 C12 PTY sing 498 n n 
C11 H111 PTY sing 499 n n 
C11 H112 PTY sing 500 n n 
C12 C13 PTY sing 501 n n 
C12 H121 PTY sing 502 n n 
C12 H122 PTY sing 503 n n 
C13 C14 PTY sing 504 n n 
C13 H131 PTY sing 505 n n 
C13 H132 PTY sing 506 n n 
C14 C15 PTY sing 507 n n 
C14 H141 PTY sing 508 n n 
C14 H142 PTY sing 509 n n 
C15 C16 PTY sing 510 n n 
C15 H151 PTY sing 511 n n 
C15 H152 PTY sing 512 n n 
C16 C17 PTY sing 513 n n 
C16 H161 PTY sing 514 n n 
C16 H162 PTY sing 515 n n 
C17 C18 PTY sing 516 n n 
C17 H171 PTY sing 517 n n 
C17 H172 PTY sing 518 n n 
C18 C19 PTY sing 519 n n 
C18 H181 PTY sing 520 n n 
C18 H182 PTY sing 521 n n 
C19 C20 PTY sing 522 n n 
C19 H191 PTY sing 523 n n 
C19 H192 PTY sing 524 n n 
C20 C21 PTY sing 525 n n 
C20 H201 PTY sing 526 n n 
C20 H202 PTY sing 527 n n 
C21 C22 PTY sing 528 n n 
C21 H211 PTY sing 529 n n 
C21 H212 PTY sing 530 n n 
C22 C23 PTY sing 531 n n 
C22 H221 PTY sing 532 n n 
C22 H222 PTY sing 533 n n 
C23 C24 PTY sing 534 n n 
C23 H231 PTY sing 535 n n 
C23 H232 PTY sing 536 n n 
C24 C25 PTY sing 537 n n 
C24 H241 PTY sing 538 n n 
C24 H242 PTY sing 539 n n 
C25 C26 PTY sing 540 n n 
C25 H251 PTY sing 541 n n 
C25 H252 PTY sing 542 n n 
C26 C27 PTY sing 543 n n 
C26 H261 PTY sing 544 n n 
C26 H262 PTY sing 545 n n 
C27 C28 PTY sing 546 n n 
C27 H271 PTY sing 547 n n 
C27 H272 PTY sing 548 n n 
C28 C29 PTY sing 549 n n 
C28 H281 PTY sing 550 n n 
C28 H282 PTY sing 551 n n 
C29 H291 PTY sing 552 n n 
C29 H292 PTY sing 553 n n 
C29 H293 PTY sing 554 n n 
C30 C31 PTY sing 555 n n 
C30 O30 PTY doub 556 n n 
C31 C32 PTY sing 557 n n 
C31 H311 PTY sing 558 n n 
C31 H312 PTY sing 559 n n 
C32 C33 PTY sing 560 n n 
C32 H321 PTY sing 561 n n 
C32 H322 PTY sing 562 n n 
C33 C34 PTY sing 563 n n 
C33 H331 PTY sing 564 n n 
C33 H332 PTY sing 565 n n 
C34 C35 PTY sing 566 n n 
C34 H341 PTY sing 567 n n 
C34 H342 PTY sing 568 n n 
C35 C36 PTY sing 569 n n 
C35 H351 PTY sing 570 n n 
C35 H352 PTY sing 571 n n 
C36 C37 PTY sing 572 n n 
C36 H361 PTY sing 573 n n 
C36 H362 PTY sing 574 n n 
C37 C38 PTY sing 575 n n 
C37 H371 PTY sing 576 n n 
C37 H372 PTY sing 577 n n 
C38 C39 PTY sing 578 n n 
C38 H381 PTY sing 579 n n 
C38 H382 PTY sing 580 n n 
C39 C40 PTY sing 581 n n 
C39 H391 PTY sing 582 n n 
C39 H392 PTY sing 583 n n 
C40 C41 PTY sing 584 n n 
C40 H401 PTY sing 585 n n 
C40 H402 PTY sing 586 n n 
C41 C42 PTY sing 587 n n 
C41 H411 PTY sing 588 n n 
C41 H412 PTY sing 589 n n 
C42 C43 PTY sing 590 n n 
C42 H421 PTY sing 591 n n 
C42 H422 PTY sing 592 n n 
C43 C44 PTY sing 593 n n 
C43 H431 PTY sing 594 n n 
C43 H432 PTY sing 595 n n 
C44 H441 PTY sing 596 n n 
C44 H442 PTY sing 597 n n 
C44 H443 PTY sing 598 n n 
P1 O11 PTY sing 599 n n 
P1 O12 PTY sing 600 n n 
P1 O13 PTY doub 601 n n 
P1 O14 PTY sing 602 n n 
O12 H12O PTY sing 603 n n 
N1 HN11 PTY sing 604 n n 
N1 HN12 PTY sing 605 n n 
#
_atom_sites.entry_id                     9M4W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 801 800 ZN ZN . 
F 3 PTY A 1 802 804 PTY PTY . 
G 4 POV A 1 803 901 POV POV . 
H 5 Y01 A 1 804 1001 Y01 Y01 . 
I 6 A1L55 A 1 805 1002 A1L55 LIG . 
J 2 ZN B 1 801 800 ZN ZN . 
K 3 PTY B 1 802 804 PTY PTY . 
L 4 POV B 1 803 901 POV POV . 
M 5 Y01 B 1 804 1001 Y01 Y01 . 
N 6 A1L55 B 1 805 1002 A1L55 LIG . 
O 2 ZN C 1 801 800 ZN ZN . 
P 3 PTY C 1 802 804 PTY PTY . 
Q 4 POV C 1 803 901 POV POV . 
R 5 Y01 C 1 804 1001 Y01 Y01 . 
S 6 A1L55 C 1 805 1002 A1L55 LIG . 
T 2 ZN D 1 801 800 ZN ZN . 
U 3 PTY D 1 802 804 PTY PTY . 
V 4 POV D 1 803 901 POV POV . 
W 5 Y01 D 1 804 1001 Y01 Y01 . 
X 6 A1L55 D 1 805 1002 A1L55 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTY . . . K 3 185.871 151.013 170.56 1 47.45 ? C1 PTY 802 B 1 
HETATM 2 O O4 PTY . . . K 3 186.357 152.109 171.327 1 47.45 ? O4 PTY 802 B 1 
HETATM 3 C C5 PTY . . . K 3 185.015 151.939 168.395 1 47.45 ? C5 PTY 802 B 1 
HETATM 4 C C6 PTY . . . K 3 184.626 151.406 169.769 1 47.45 ? C6 PTY 802 B 1 
HETATM 5 O O7 PTY . . . K 3 183.872 152.377 170.493 1 47.45 ? O7 PTY 802 B 1 
HETATM 6 C C8 PTY . . . K 3 182.48 151.982 170.649 1 47.45 ? C8 PTY 802 B 1 
HETATM 7 O O10 PTY . . . K 3 181.907 151.432 169.724 1 47.45 ? O10 PTY 802 B 1 
HETATM 8 C C11 PTY . . . K 3 181.746 152.265 171.938 1 47.45 ? C11 PTY 802 B 1 
HETATM 9 C C12 PTY . . . K 3 182.487 151.692 173.14 1 47.45 ? C12 PTY 802 B 1 
HETATM 10 C C13 PTY . . . K 3 183.564 152.647 173.64 1 47.45 ? C13 PTY 802 B 1 
HETATM 11 C C14 PTY . . . K 3 184.34 152.042 174.803 1 47.45 ? C14 PTY 802 B 1 
HETATM 12 C C15 PTY . . . K 3 183.723 152.402 176.149 1 47.45 ? C15 PTY 802 B 1 
HETATM 13 C C16 PTY . . . K 3 184.762 153.05 177.057 1 47.45 ? C16 PTY 802 B 1 
HETATM 14 C C17 PTY . . . K 3 184.189 153.308 178.445 1 47.45 ? C17 PTY 802 B 1 
HETATM 15 C C18 PTY . . . K 3 185.148 154.141 179.286 1 47.45 ? C18 PTY 802 B 1 
HETATM 16 C C19 PTY . . . K 3 184.659 154.248 180.725 1 47.45 ? C19 PTY 802 B 1 
HETATM 17 C C20 PTY . . . K 3 184.525 152.866 181.349 1 47.45 ? C20 PTY 802 B 1 
HETATM 18 C C21 PTY . . . K 3 184.301 152.939 182.854 1 47.45 ? C21 PTY 802 B 1 
HETATM 19 C C22 PTY . . . K 3 185.576 153.313 183.592 1 47.45 ? C22 PTY 802 B 1 
HETATM 20 C C23 PTY . . . K 3 185.512 152.863 185.046 1 47.45 ? C23 PTY 802 B 1 
HETATM 21 C C24 PTY . . . K 3 184.71 153.826 185.909 1 47.45 ? C24 PTY 802 B 1 
HETATM 22 C C25 PTY . . . K 3 185.37 155.196 185.95 1 47.45 ? C25 PTY 802 B 1 
HETATM 23 C C26 PTY . . . K 3 186.77 155.151 186.549 1 47.45 ? C26 PTY 802 B 1 
HETATM 24 C C27 PTY . . . K 3 186.725 154.867 188.044 1 47.45 ? C27 PTY 802 B 1 
HETATM 25 C C28 PTY . . . K 3 187.664 155.79 188.812 1 47.45 ? C28 PTY 802 B 1 
HETATM 26 C C29 PTY . . . K 3 189.081 155.712 188.292 1 47.45 ? C29 PTY 802 B 1 
HETATM 27 C C30 PTY . . . K 3 187.001 151.826 172.596 1 47.45 ? C30 PTY 802 B 1 
HETATM 28 C C31 PTY . . . K 3 187.825 152.864 173.322 1 47.45 ? C31 PTY 802 B 1 
HETATM 29 O O30 PTY . . . K 3 186.855 150.72 173.081 1 47.45 ? O30 PTY 802 B 1 
HETATM 30 C C32 PTY . . . K 3 188.365 152.223 174.594 1 47.45 ? C32 PTY 802 B 1 
HETATM 31 C C33 PTY . . . K 3 188.997 153.228 175.548 1 47.45 ? C33 PTY 802 B 1 
HETATM 32 C C34 PTY . . . K 3 189.13 152.609 176.935 1 47.45 ? C34 PTY 802 B 1 
HETATM 33 C C35 PTY . . . K 3 189.709 153.591 177.945 1 47.45 ? C35 PTY 802 B 1 
HETATM 34 C C36 PTY . . . K 3 189.532 153.066 179.364 1 47.45 ? C36 PTY 802 B 1 
HETATM 35 C C37 PTY . . . K 3 190.267 153.939 180.375 1 47.45 ? C37 PTY 802 B 1 
HETATM 36 P P1 PTY . . . K 3 186.478 150.998 166.414 1 47.45 ? P1 PTY 802 B 1 
HETATM 37 O O11 PTY . . . K 3 188.081 150.845 166.363 1 47.45 ? O11 PTY 802 B 1 
HETATM 38 O O12 PTY . . . K 3 186.096 152.236 165.638 1 47.45 ? O12 PTY 802 B 1 
HETATM 39 O O13 PTY . . . K 3 185.844 149.674 166.058 1 47.45 ? O13 PTY 802 B 1 
HETATM 40 O O14 PTY . . . K 3 186.202 151.276 167.973 1 47.45 ? O14 PTY 802 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#