data_9M4W
#
_model_server_result.job_id            1SokQG1AHJ-Iv2ZAR00cZg 
_model_server_result.datetime_utc      '2025-07-05 08:45:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9m4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":803}' 
#
_entry.id    9M4W 
#
_exptl.entry_id    9M4W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9M4W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9M4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
? 4 Q N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 556 A CYS 553 1_555 A SG CYS 561 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 556 B CYS 553 1_555 B SG CYS 561 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 556 C CYS 553 1_555 C SG CYS 561 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 556 D CYS 553 1_555 D SG CYS 561 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A ND1 HIS 175 A HIS 172 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A SG CYS 179 A CYS 176 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A SG CYS 181 A CYS 178 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 B ND1 HIS 175 B HIS 172 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc6 B SG CYS 179 B CYS 176 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc7 B SG CYS 181 B CYS 178 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc8 B SG CYS 184 B CYS 181 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc9 C ND1 HIS 175 C HIS 172 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc10 C SG CYS 179 C CYS 176 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 C SG CYS 181 C CYS 178 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc12 C SG CYS 184 C CYS 181 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc13 D ND1 HIS 175 D HIS 172 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc14 D SG CYS 179 D CYS 176 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc15 D SG CYS 181 D CYS 178 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc16 D SG CYS 184 D CYS 181 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 327 n n 
N C13 POV sing 328 n n 
N C14 POV sing 329 n n 
N C15 POV sing 330 n n 
P O11 POV sing 331 n n 
P O12 POV sing 332 n n 
P O13 POV sing 333 n n 
P O14 POV doub 334 n n 
C1 C2 POV sing 335 n n 
C1 O11 POV sing 336 n n 
C1 H1 POV sing 337 n n 
C1 H1A POV sing 338 n n 
C2 C3 POV sing 339 n n 
C2 O21 POV sing 340 n n 
C2 H2 POV sing 341 n n 
C3 O31 POV sing 342 n n 
C3 H3 POV sing 343 n n 
C3 H3A POV sing 344 n n 
C210 C211 POV sing 345 n n 
C210 C29 POV doub 346 z n 
C210 H210 POV sing 347 n n 
C310 C311 POV sing 348 n n 
C310 C39 POV sing 349 n n 
C310 H310 POV sing 350 n n 
C310 H31A POV sing 351 n n 
C11 C12 POV sing 352 n n 
C11 O12 POV sing 353 n n 
C11 H11 POV sing 354 n n 
C11 H11A POV sing 355 n n 
C211 C212 POV sing 356 n n 
C211 H211 POV sing 357 n n 
C211 H21A POV sing 358 n n 
C311 C312 POV sing 359 n n 
C311 H311 POV sing 360 n n 
C311 H31B POV sing 361 n n 
C12 H12 POV sing 362 n n 
C12 H12A POV sing 363 n n 
C212 C213 POV sing 364 n n 
C212 H212 POV sing 365 n n 
C212 H21B POV sing 366 n n 
C312 C313 POV sing 367 n n 
C312 H312 POV sing 368 n n 
C312 H31C POV sing 369 n n 
C13 H13 POV sing 370 n n 
C13 H13A POV sing 371 n n 
C13 H13B POV sing 372 n n 
C213 C214 POV sing 373 n n 
C213 H213 POV sing 374 n n 
C213 H21C POV sing 375 n n 
C313 C314 POV sing 376 n n 
C313 H313 POV sing 377 n n 
C313 H31D POV sing 378 n n 
C14 H14 POV sing 379 n n 
C14 H14A POV sing 380 n n 
C14 H14B POV sing 381 n n 
C214 C215 POV sing 382 n n 
C214 H214 POV sing 383 n n 
C214 H21D POV sing 384 n n 
C314 C315 POV sing 385 n n 
C314 H314 POV sing 386 n n 
C314 H31E POV sing 387 n n 
C15 H15 POV sing 388 n n 
C15 H15A POV sing 389 n n 
C15 H15B POV sing 390 n n 
C215 C216 POV sing 391 n n 
C215 H215 POV sing 392 n n 
C215 H21E POV sing 393 n n 
C315 C316 POV sing 394 n n 
C315 H315 POV sing 395 n n 
C315 H31F POV sing 396 n n 
C216 C217 POV sing 397 n n 
C216 H216 POV sing 398 n n 
C216 H21F POV sing 399 n n 
C316 H316 POV sing 400 n n 
C316 H31G POV sing 401 n n 
C316 H31H POV sing 402 n n 
C217 C218 POV sing 403 n n 
C217 H217 POV sing 404 n n 
C217 H21G POV sing 405 n n 
C218 H218 POV sing 406 n n 
C218 H21H POV sing 407 n n 
C218 H21J POV sing 408 n n 
C21 O21 POV sing 409 n n 
C21 C22 POV sing 410 n n 
C21 O22 POV doub 411 n n 
C22 C23 POV sing 412 n n 
C22 H22 POV sing 413 n n 
C22 H22A POV sing 414 n n 
C23 C24 POV sing 415 n n 
C23 H23 POV sing 416 n n 
C23 H23A POV sing 417 n n 
C24 C25 POV sing 418 n n 
C24 H24 POV sing 419 n n 
C24 H24A POV sing 420 n n 
C25 C26 POV sing 421 n n 
C25 H25 POV sing 422 n n 
C25 H25A POV sing 423 n n 
C26 C27 POV sing 424 n n 
C26 H26 POV sing 425 n n 
C26 H26A POV sing 426 n n 
C27 C28 POV sing 427 n n 
C27 H27 POV sing 428 n n 
C27 H27A POV sing 429 n n 
C28 C29 POV sing 430 n n 
C28 H28 POV sing 431 n n 
C28 H28A POV sing 432 n n 
C29 H29 POV sing 433 n n 
C31 O31 POV sing 434 n n 
C31 C32 POV sing 435 n n 
C31 O32 POV doub 436 n n 
C32 C33 POV sing 437 n n 
C32 H32 POV sing 438 n n 
C32 H32A POV sing 439 n n 
C33 C34 POV sing 440 n n 
C33 H33 POV sing 441 n n 
C33 H33A POV sing 442 n n 
C34 C35 POV sing 443 n n 
C34 H34 POV sing 444 n n 
C34 H34A POV sing 445 n n 
C35 C36 POV sing 446 n n 
C35 H35 POV sing 447 n n 
C35 H35A POV sing 448 n n 
C36 C37 POV sing 449 n n 
C36 H36 POV sing 450 n n 
C36 H36A POV sing 451 n n 
C37 C38 POV sing 452 n n 
C37 H37 POV sing 453 n n 
C37 H37A POV sing 454 n n 
C38 C39 POV sing 455 n n 
C38 H38 POV sing 456 n n 
C38 H38A POV sing 457 n n 
C39 H39 POV sing 458 n n 
C39 H39A POV sing 459 n n 
#
_atom_sites.entry_id                     9M4W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 801 800 ZN ZN . 
F 3 PTY A 1 802 804 PTY PTY . 
G 4 POV A 1 803 901 POV POV . 
H 5 Y01 A 1 804 1001 Y01 Y01 . 
I 6 A1L55 A 1 805 1002 A1L55 LIG . 
J 2 ZN B 1 801 800 ZN ZN . 
K 3 PTY B 1 802 804 PTY PTY . 
L 4 POV B 1 803 901 POV POV . 
M 5 Y01 B 1 804 1001 Y01 Y01 . 
N 6 A1L55 B 1 805 1002 A1L55 LIG . 
O 2 ZN C 1 801 800 ZN ZN . 
P 3 PTY C 1 802 804 PTY PTY . 
Q 4 POV C 1 803 901 POV POV . 
R 5 Y01 C 1 804 1001 Y01 Y01 . 
S 6 A1L55 C 1 805 1002 A1L55 LIG . 
T 2 ZN D 1 801 800 ZN ZN . 
U 3 PTY D 1 802 804 PTY PTY . 
V 4 POV D 1 803 901 POV POV . 
W 5 Y01 D 1 804 1001 Y01 Y01 . 
X 6 A1L55 D 1 805 1002 A1L55 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . V 4 132.841 174.866 200.053 1 59.55 ? P POV 803 D 1 
HETATM 2 C C1 POV . . . V 4 133.03 177.284 199.021 1 59.55 ? C1 POV 803 D 1 
HETATM 3 C C2 POV . . . V 4 132.918 177.911 197.642 1 59.55 ? C2 POV 803 D 1 
HETATM 4 C C3 POV . . . V 4 133.756 177.101 196.661 1 59.55 ? C3 POV 803 D 1 
HETATM 5 C C210 POV . . . V 4 135.754 181.874 188.32 1 59.55 ? C210 POV 803 D 1 
HETATM 6 C C310 POV . . . V 4 141.853 179.097 185.793 1 59.55 ? C310 POV 803 D 1 
HETATM 7 O O11 POV . . . V 4 132.416 175.999 198.993 1 59.55 ? O11 POV 803 D 1 
HETATM 8 C C211 POV . . . V 4 136.405 181.245 187.113 1 59.55 ? C211 POV 803 D 1 
HETATM 9 C C311 POV . . . V 4 141.89 179.096 184.271 1 59.55 ? C311 POV 803 D 1 
HETATM 10 O O12 POV . . . V 4 131.64 173.803 199.928 1 59.55 ? O12 POV 803 D 1 
HETATM 11 C C212 POV . . . V 4 135.749 181.777 185.845 1 59.55 ? C212 POV 803 D 1 
HETATM 12 O O13 POV . . . V 4 134.101 174.212 199.545 1 59.55 ? O13 POV 803 D 1 
HETATM 13 C C213 POV . . . V 4 136.365 181.139 184.604 1 59.55 ? C213 POV 803 D 1 
HETATM 14 O O14 POV . . . V 4 132.804 175.466 201.436 1 59.55 ? O14 POV 803 D 1 
HETATM 15 C C214 POV . . . V 4 137.833 181.519 184.459 1 59.55 ? C214 POV 803 D 1 
HETATM 16 C C215 POV . . . V 4 138.466 180.825 183.26 1 59.55 ? C215 POV 803 D 1 
HETATM 17 C C21 POV . . . V 4 132.352 180.227 197.666 1 59.55 ? C21 POV 803 D 1 
HETATM 18 O O21 POV . . . V 4 133.419 179.243 197.683 1 59.55 ? O21 POV 803 D 1 
HETATM 19 C C22 POV . . . V 4 132.518 181.482 196.849 1 59.55 ? C22 POV 803 D 1 
HETATM 20 O O22 POV . . . V 4 131.339 180.029 198.315 1 59.55 ? O22 POV 803 D 1 
HETATM 21 C C23 POV . . . V 4 132.747 181.072 195.403 1 59.55 ? C23 POV 803 D 1 
HETATM 22 C C24 POV . . . V 4 133.801 181.952 194.748 1 59.55 ? C24 POV 803 D 1 
HETATM 23 C C25 POV . . . V 4 134.276 181.343 193.435 1 59.55 ? C25 POV 803 D 1 
HETATM 24 C C26 POV . . . V 4 133.154 181.315 192.409 1 59.55 ? C26 POV 803 D 1 
HETATM 25 C C27 POV . . . V 4 133.685 180.863 191.054 1 59.55 ? C27 POV 803 D 1 
HETATM 26 C C28 POV . . . V 4 134.838 181.748 190.6 1 59.55 ? C28 POV 803 D 1 
HETATM 27 C C29 POV . . . V 4 135.486 181.129 189.387 1 59.55 ? C29 POV 803 D 1 
HETATM 28 C C31 POV . . . V 4 135.349 177.504 194.779 1 59.55 ? C31 POV 803 D 1 
HETATM 29 O O31 POV . . . V 4 134.562 177.995 195.897 1 59.55 ? O31 POV 803 D 1 
HETATM 30 C C32 POV . . . V 4 136.359 178.405 194.113 1 59.55 ? C32 POV 803 D 1 
HETATM 31 O O32 POV . . . V 4 135.176 176.362 194.387 1 59.55 ? O32 POV 803 D 1 
HETATM 32 C C33 POV . . . V 4 136.575 177.958 192.674 1 59.55 ? C33 POV 803 D 1 
HETATM 33 C C34 POV . . . V 4 137.569 178.868 191.966 1 59.55 ? C34 POV 803 D 1 
HETATM 34 C C35 POV . . . V 4 137.67 178.507 190.489 1 59.55 ? C35 POV 803 D 1 
HETATM 35 C C36 POV . . . V 4 138.97 179.027 189.888 1 59.55 ? C36 POV 803 D 1 
HETATM 36 C C37 POV . . . V 4 139.006 178.826 188.379 1 59.55 ? C37 POV 803 D 1 
HETATM 37 C C38 POV . . . V 4 140.4 179.106 187.832 1 59.55 ? C38 POV 803 D 1 
HETATM 38 C C39 POV . . . V 4 140.421 179.06 186.311 1 59.55 ? C39 POV 803 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#