data_9M4W # _model_server_result.job_id KWSec8iuKekll0pgcCKAlA _model_server_result.datetime_utc '2025-07-03 18:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9m4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":804}' # _entry.id 9M4W # _exptl.entry_id 9M4W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9M4W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9M4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N ? 5 R N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 556 A CYS 553 1_555 A SG CYS 561 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 556 B CYS 553 1_555 B SG CYS 561 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 556 C CYS 553 1_555 C SG CYS 561 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 556 D CYS 553 1_555 D SG CYS 561 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A ND1 HIS 175 A HIS 172 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A SG CYS 179 A CYS 176 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A SG CYS 181 A CYS 178 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 B ND1 HIS 175 B HIS 172 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 B SG CYS 179 B CYS 176 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 B SG CYS 181 B CYS 178 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 B SG CYS 184 B CYS 181 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 C ND1 HIS 175 C HIS 172 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 C SG CYS 179 C CYS 176 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 C SG CYS 181 C CYS 178 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 C SG CYS 184 C CYS 181 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc13 D ND1 HIS 175 D HIS 172 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc14 D SG CYS 179 D CYS 176 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 D SG CYS 181 D CYS 178 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc16 D SG CYS 184 D CYS 181 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 705 n n CBA CAB Y01 sing 706 n n CBA CAN Y01 sing 707 n n CAN CAJ Y01 sing 708 n n CAJ CAO Y01 sing 709 n n CAO CBB Y01 sing 710 n n CBB CAC Y01 sing 711 n n CBB CBE Y01 sing 712 n n CBE CAP Y01 sing 713 n n CBE CBI Y01 sing 714 n n CAP CAQ Y01 sing 715 n n CAQ CBG Y01 sing 716 n n CBG CBI Y01 sing 717 n n CBG CBD Y01 sing 718 n n CBI CAE Y01 sing 719 n n CBI CAU Y01 sing 720 n n CAU CAS Y01 sing 721 n n CAS CBF Y01 sing 722 n n CBF CBD Y01 sing 723 n n CBF CBH Y01 sing 724 n n CBD CAK Y01 sing 725 n n CAK CAI Y01 sing 726 n n CAI CAZ Y01 doub 727 n n CAZ CAV Y01 sing 728 n n CAZ CBH Y01 sing 729 n n CAV CBC Y01 sing 730 n n CBH CAD Y01 sing 731 n n CBH CAT Y01 sing 732 n n CAT CAR Y01 sing 733 n n CAR CBC Y01 sing 734 n n CBC OAW Y01 sing 735 n n OAW CAY Y01 sing 736 n n CAY OAG Y01 doub 737 n n CAY CAM Y01 sing 738 n n CAM CAL Y01 sing 739 n n CAL CAX Y01 sing 740 n n CAX OAH Y01 sing 741 n n CAX OAF Y01 doub 742 n n CAA HAA1 Y01 sing 743 n n CAA HAA2 Y01 sing 744 n n CAA HAA3 Y01 sing 745 n n CBA HBA Y01 sing 746 n n CAB HAB1 Y01 sing 747 n n CAB HAB2 Y01 sing 748 n n CAB HAB3 Y01 sing 749 n n CAN HAN1 Y01 sing 750 n n CAN HAN2 Y01 sing 751 n n CAJ HAJ1 Y01 sing 752 n n CAJ HAJ2 Y01 sing 753 n n CAO HAO1 Y01 sing 754 n n CAO HAO2 Y01 sing 755 n n CBB HBB Y01 sing 756 n n CAC HAC1 Y01 sing 757 n n CAC HAC2 Y01 sing 758 n n CAC HAC3 Y01 sing 759 n n CBE HBE Y01 sing 760 n n CAP HAP1 Y01 sing 761 n n CAP HAP2 Y01 sing 762 n n CAQ HAQ1 Y01 sing 763 n n CAQ HAQ2 Y01 sing 764 n n CBG HBG Y01 sing 765 n n CBD HBD Y01 sing 766 n n CAE HAE1 Y01 sing 767 n n CAE HAE2 Y01 sing 768 n n CAE HAE3 Y01 sing 769 n n CAU HAU1 Y01 sing 770 n n CAU HAU2 Y01 sing 771 n n CAS HAS1 Y01 sing 772 n n CAS HAS2 Y01 sing 773 n n CBF HBF Y01 sing 774 n n CAK HAK1 Y01 sing 775 n n CAK HAK2 Y01 sing 776 n n CAI HAI Y01 sing 777 n n CAV HAV1 Y01 sing 778 n n CAV HAV2 Y01 sing 779 n n CBC HBC Y01 sing 780 n n CAD HAD1 Y01 sing 781 n n CAD HAD2 Y01 sing 782 n n CAD HAD3 Y01 sing 783 n n CAT HAT1 Y01 sing 784 n n CAT HAT2 Y01 sing 785 n n CAR HAR1 Y01 sing 786 n n CAR HAR2 Y01 sing 787 n n CAM HAM1 Y01 sing 788 n n CAM HAM2 Y01 sing 789 n n CAL HAL1 Y01 sing 790 n n CAL HAL2 Y01 sing 791 n n OAH HAH Y01 sing 792 n n # _atom_sites.entry_id 9M4W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 801 800 ZN ZN . F 3 PTY A 1 802 804 PTY PTY . G 4 POV A 1 803 901 POV POV . H 5 Y01 A 1 804 1001 Y01 Y01 . I 6 A1L55 A 1 805 1002 A1L55 LIG . J 2 ZN B 1 801 800 ZN ZN . K 3 PTY B 1 802 804 PTY PTY . L 4 POV B 1 803 901 POV POV . M 5 Y01 B 1 804 1001 Y01 Y01 . N 6 A1L55 B 1 805 1002 A1L55 LIG . O 2 ZN C 1 801 800 ZN ZN . P 3 PTY C 1 802 804 PTY PTY . Q 4 POV C 1 803 901 POV POV . R 5 Y01 C 1 804 1001 Y01 Y01 . S 6 A1L55 C 1 805 1002 A1L55 LIG . T 2 ZN D 1 801 800 ZN ZN . U 3 PTY D 1 802 804 PTY PTY . V 4 POV D 1 803 901 POV POV . W 5 Y01 D 1 804 1001 Y01 Y01 . X 6 A1L55 D 1 805 1002 A1L55 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . R 5 191.37 171.106 179.565 1 35.98 ? CAA Y01 804 C 1 HETATM 2 C CBA Y01 . . . R 5 190.603 172.395 179.299 1 35.98 ? CBA Y01 804 C 1 HETATM 3 C CAB Y01 . . . R 5 190.015 172.403 177.896 1 35.98 ? CAB Y01 804 C 1 HETATM 4 C CAN Y01 . . . R 5 191.488 173.614 179.524 1 35.98 ? CAN Y01 804 C 1 HETATM 5 C CAJ Y01 . . . R 5 192.756 173.552 178.683 1 35.98 ? CAJ Y01 804 C 1 HETATM 6 C CAO Y01 . . . R 5 193.157 174.959 178.248 1 35.98 ? CAO Y01 804 C 1 HETATM 7 C CBB Y01 . . . R 5 194.25 174.971 177.183 1 35.98 ? CBB Y01 804 C 1 HETATM 8 C CAC Y01 . . . R 5 195.38 174.035 177.594 1 35.98 ? CAC Y01 804 C 1 HETATM 9 C CBE Y01 . . . R 5 193.712 174.627 175.796 1 35.98 ? CBE Y01 804 C 1 HETATM 10 C CAP Y01 . . . R 5 192.235 174.984 175.606 1 35.98 ? CAP Y01 804 C 1 HETATM 11 C CAQ Y01 . . . R 5 192.058 175.432 174.156 1 35.98 ? CAQ Y01 804 C 1 HETATM 12 C CBG Y01 . . . R 5 193.405 175.124 173.529 1 35.98 ? CBG Y01 804 C 1 HETATM 13 C CBI Y01 . . . R 5 194.387 175.367 174.653 1 35.98 ? CBI Y01 804 C 1 HETATM 14 C CAE Y01 . . . R 5 194.436 176.852 174.993 1 35.98 ? CAE Y01 804 C 1 HETATM 15 C CAU Y01 . . . R 5 195.764 174.892 174.226 1 35.98 ? CAU Y01 804 C 1 HETATM 16 C CAS Y01 . . . R 5 196.173 175.677 172.983 1 35.98 ? CAS Y01 804 C 1 HETATM 17 C CBF Y01 . . . R 5 195.176 175.468 171.844 1 35.98 ? CBF Y01 804 C 1 HETATM 18 C CBD Y01 . . . R 5 193.76 175.86 172.247 1 35.98 ? CBD Y01 804 C 1 HETATM 19 C CAK Y01 . . . R 5 192.773 175.5 171.147 1 35.98 ? CAK Y01 804 C 1 HETATM 20 C CAI Y01 . . . R 5 193.303 175.97 169.814 1 35.98 ? CAI Y01 804 C 1 HETATM 21 C CAZ Y01 . . . R 5 194.598 175.83 169.508 1 35.98 ? CAZ Y01 804 C 1 HETATM 22 C CAV Y01 . . . R 5 194.958 175.355 168.12 1 35.98 ? CAV Y01 804 C 1 HETATM 23 C CBH Y01 . . . R 5 195.623 176.17 170.569 1 35.98 ? CBH Y01 804 C 1 HETATM 24 C CAD Y01 . . . R 5 195.643 177.678 170.766 1 35.98 ? CAD Y01 804 C 1 HETATM 25 C CAT Y01 . . . R 5 197.036 175.691 170.262 1 35.98 ? CAT Y01 804 C 1 HETATM 26 C CAR Y01 . . . R 5 197.325 175.598 168.778 1 35.98 ? CAR Y01 804 C 1 HETATM 27 C CBC Y01 . . . R 5 196.308 174.652 168.159 1 35.98 ? CBC Y01 804 C 1 HETATM 28 O OAW Y01 . . . R 5 196.749 174.177 166.882 1 35.98 ? OAW Y01 804 C 1 HETATM 29 C CAY Y01 . . . R 5 196.402 174.951 165.701 1 35.98 ? CAY Y01 804 C 1 HETATM 30 O OAG Y01 . . . R 5 195.729 174.409 164.844 1 35.98 ? OAG Y01 804 C 1 HETATM 31 C CAM Y01 . . . R 5 196.895 176.364 165.498 1 35.98 ? CAM Y01 804 C 1 HETATM 32 C CAL Y01 . . . R 5 198.161 176.318 164.665 1 35.98 ? CAL Y01 804 C 1 HETATM 33 C CAX Y01 . . . R 5 197.825 176.441 163.202 1 35.98 ? CAX Y01 804 C 1 HETATM 34 O OAH Y01 . . . R 5 198.33 175.685 162.396 1 35.98 ? OAH Y01 804 C 1 HETATM 35 O OAF Y01 . . . R 5 196.984 177.376 162.771 1 35.98 ? OAF Y01 804 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #