data_9M4W
#
_model_server_result.job_id            zuMxz0L6AB5JzXfXSbbdFQ 
_model_server_result.datetime_utc      '2025-07-07 03:04:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9m4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":804}' 
#
_entry.id    9M4W 
#
_exptl.entry_id    9M4W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9M4W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9M4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 M N N 
? 5 R N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 556 A CYS 553 1_555 A SG CYS 561 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 556 B CYS 553 1_555 B SG CYS 561 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 556 C CYS 553 1_555 C SG CYS 561 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 556 D CYS 553 1_555 D SG CYS 561 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A ND1 HIS 175 A HIS 172 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A SG CYS 179 A CYS 176 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A SG CYS 181 A CYS 178 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc5 B ND1 HIS 175 B HIS 172 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc6 B SG CYS 179 B CYS 176 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc7 B SG CYS 181 B CYS 178 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc8 B SG CYS 184 B CYS 181 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc9 C ND1 HIS 175 C HIS 172 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc10 C SG CYS 179 C CYS 176 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 C SG CYS 181 C CYS 178 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc12 C SG CYS 184 C CYS 181 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc13 D ND1 HIS 175 D HIS 172 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc14 D SG CYS 179 D CYS 176 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc15 D SG CYS 181 D CYS 178 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc16 D SG CYS 184 D CYS 181 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 705 n n 
CBA CAB Y01 sing 706 n n 
CBA CAN Y01 sing 707 n n 
CAN CAJ Y01 sing 708 n n 
CAJ CAO Y01 sing 709 n n 
CAO CBB Y01 sing 710 n n 
CBB CAC Y01 sing 711 n n 
CBB CBE Y01 sing 712 n n 
CBE CAP Y01 sing 713 n n 
CBE CBI Y01 sing 714 n n 
CAP CAQ Y01 sing 715 n n 
CAQ CBG Y01 sing 716 n n 
CBG CBI Y01 sing 717 n n 
CBG CBD Y01 sing 718 n n 
CBI CAE Y01 sing 719 n n 
CBI CAU Y01 sing 720 n n 
CAU CAS Y01 sing 721 n n 
CAS CBF Y01 sing 722 n n 
CBF CBD Y01 sing 723 n n 
CBF CBH Y01 sing 724 n n 
CBD CAK Y01 sing 725 n n 
CAK CAI Y01 sing 726 n n 
CAI CAZ Y01 doub 727 n n 
CAZ CAV Y01 sing 728 n n 
CAZ CBH Y01 sing 729 n n 
CAV CBC Y01 sing 730 n n 
CBH CAD Y01 sing 731 n n 
CBH CAT Y01 sing 732 n n 
CAT CAR Y01 sing 733 n n 
CAR CBC Y01 sing 734 n n 
CBC OAW Y01 sing 735 n n 
OAW CAY Y01 sing 736 n n 
CAY OAG Y01 doub 737 n n 
CAY CAM Y01 sing 738 n n 
CAM CAL Y01 sing 739 n n 
CAL CAX Y01 sing 740 n n 
CAX OAH Y01 sing 741 n n 
CAX OAF Y01 doub 742 n n 
CAA HAA1 Y01 sing 743 n n 
CAA HAA2 Y01 sing 744 n n 
CAA HAA3 Y01 sing 745 n n 
CBA HBA Y01 sing 746 n n 
CAB HAB1 Y01 sing 747 n n 
CAB HAB2 Y01 sing 748 n n 
CAB HAB3 Y01 sing 749 n n 
CAN HAN1 Y01 sing 750 n n 
CAN HAN2 Y01 sing 751 n n 
CAJ HAJ1 Y01 sing 752 n n 
CAJ HAJ2 Y01 sing 753 n n 
CAO HAO1 Y01 sing 754 n n 
CAO HAO2 Y01 sing 755 n n 
CBB HBB Y01 sing 756 n n 
CAC HAC1 Y01 sing 757 n n 
CAC HAC2 Y01 sing 758 n n 
CAC HAC3 Y01 sing 759 n n 
CBE HBE Y01 sing 760 n n 
CAP HAP1 Y01 sing 761 n n 
CAP HAP2 Y01 sing 762 n n 
CAQ HAQ1 Y01 sing 763 n n 
CAQ HAQ2 Y01 sing 764 n n 
CBG HBG Y01 sing 765 n n 
CBD HBD Y01 sing 766 n n 
CAE HAE1 Y01 sing 767 n n 
CAE HAE2 Y01 sing 768 n n 
CAE HAE3 Y01 sing 769 n n 
CAU HAU1 Y01 sing 770 n n 
CAU HAU2 Y01 sing 771 n n 
CAS HAS1 Y01 sing 772 n n 
CAS HAS2 Y01 sing 773 n n 
CBF HBF Y01 sing 774 n n 
CAK HAK1 Y01 sing 775 n n 
CAK HAK2 Y01 sing 776 n n 
CAI HAI Y01 sing 777 n n 
CAV HAV1 Y01 sing 778 n n 
CAV HAV2 Y01 sing 779 n n 
CBC HBC Y01 sing 780 n n 
CAD HAD1 Y01 sing 781 n n 
CAD HAD2 Y01 sing 782 n n 
CAD HAD3 Y01 sing 783 n n 
CAT HAT1 Y01 sing 784 n n 
CAT HAT2 Y01 sing 785 n n 
CAR HAR1 Y01 sing 786 n n 
CAR HAR2 Y01 sing 787 n n 
CAM HAM1 Y01 sing 788 n n 
CAM HAM2 Y01 sing 789 n n 
CAL HAL1 Y01 sing 790 n n 
CAL HAL2 Y01 sing 791 n n 
OAH HAH Y01 sing 792 n n 
#
_atom_sites.entry_id                     9M4W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 801 800 ZN ZN . 
F 3 PTY A 1 802 804 PTY PTY . 
G 4 POV A 1 803 901 POV POV . 
H 5 Y01 A 1 804 1001 Y01 Y01 . 
I 6 A1L55 A 1 805 1002 A1L55 LIG . 
J 2 ZN B 1 801 800 ZN ZN . 
K 3 PTY B 1 802 804 PTY PTY . 
L 4 POV B 1 803 901 POV POV . 
M 5 Y01 B 1 804 1001 Y01 Y01 . 
N 6 A1L55 B 1 805 1002 A1L55 LIG . 
O 2 ZN C 1 801 800 ZN ZN . 
P 3 PTY C 1 802 804 PTY PTY . 
Q 4 POV C 1 803 901 POV POV . 
R 5 Y01 C 1 804 1001 Y01 Y01 . 
S 6 A1L55 C 1 805 1002 A1L55 LIG . 
T 2 ZN D 1 801 800 ZN ZN . 
U 3 PTY D 1 802 804 PTY PTY . 
V 4 POV D 1 803 901 POV POV . 
W 5 Y01 D 1 804 1001 Y01 Y01 . 
X 6 A1L55 D 1 805 1002 A1L55 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . R 5 191.37 171.106 179.565 1 35.98 ? CAA Y01 804 C 1 
HETATM 2 C CBA Y01 . . . R 5 190.603 172.395 179.299 1 35.98 ? CBA Y01 804 C 1 
HETATM 3 C CAB Y01 . . . R 5 190.015 172.403 177.896 1 35.98 ? CAB Y01 804 C 1 
HETATM 4 C CAN Y01 . . . R 5 191.488 173.614 179.524 1 35.98 ? CAN Y01 804 C 1 
HETATM 5 C CAJ Y01 . . . R 5 192.756 173.552 178.683 1 35.98 ? CAJ Y01 804 C 1 
HETATM 6 C CAO Y01 . . . R 5 193.157 174.959 178.248 1 35.98 ? CAO Y01 804 C 1 
HETATM 7 C CBB Y01 . . . R 5 194.25 174.971 177.183 1 35.98 ? CBB Y01 804 C 1 
HETATM 8 C CAC Y01 . . . R 5 195.38 174.035 177.594 1 35.98 ? CAC Y01 804 C 1 
HETATM 9 C CBE Y01 . . . R 5 193.712 174.627 175.796 1 35.98 ? CBE Y01 804 C 1 
HETATM 10 C CAP Y01 . . . R 5 192.235 174.984 175.606 1 35.98 ? CAP Y01 804 C 1 
HETATM 11 C CAQ Y01 . . . R 5 192.058 175.432 174.156 1 35.98 ? CAQ Y01 804 C 1 
HETATM 12 C CBG Y01 . . . R 5 193.405 175.124 173.529 1 35.98 ? CBG Y01 804 C 1 
HETATM 13 C CBI Y01 . . . R 5 194.387 175.367 174.653 1 35.98 ? CBI Y01 804 C 1 
HETATM 14 C CAE Y01 . . . R 5 194.436 176.852 174.993 1 35.98 ? CAE Y01 804 C 1 
HETATM 15 C CAU Y01 . . . R 5 195.764 174.892 174.226 1 35.98 ? CAU Y01 804 C 1 
HETATM 16 C CAS Y01 . . . R 5 196.173 175.677 172.983 1 35.98 ? CAS Y01 804 C 1 
HETATM 17 C CBF Y01 . . . R 5 195.176 175.468 171.844 1 35.98 ? CBF Y01 804 C 1 
HETATM 18 C CBD Y01 . . . R 5 193.76 175.86 172.247 1 35.98 ? CBD Y01 804 C 1 
HETATM 19 C CAK Y01 . . . R 5 192.773 175.5 171.147 1 35.98 ? CAK Y01 804 C 1 
HETATM 20 C CAI Y01 . . . R 5 193.303 175.97 169.814 1 35.98 ? CAI Y01 804 C 1 
HETATM 21 C CAZ Y01 . . . R 5 194.598 175.83 169.508 1 35.98 ? CAZ Y01 804 C 1 
HETATM 22 C CAV Y01 . . . R 5 194.958 175.355 168.12 1 35.98 ? CAV Y01 804 C 1 
HETATM 23 C CBH Y01 . . . R 5 195.623 176.17 170.569 1 35.98 ? CBH Y01 804 C 1 
HETATM 24 C CAD Y01 . . . R 5 195.643 177.678 170.766 1 35.98 ? CAD Y01 804 C 1 
HETATM 25 C CAT Y01 . . . R 5 197.036 175.691 170.262 1 35.98 ? CAT Y01 804 C 1 
HETATM 26 C CAR Y01 . . . R 5 197.325 175.598 168.778 1 35.98 ? CAR Y01 804 C 1 
HETATM 27 C CBC Y01 . . . R 5 196.308 174.652 168.159 1 35.98 ? CBC Y01 804 C 1 
HETATM 28 O OAW Y01 . . . R 5 196.749 174.177 166.882 1 35.98 ? OAW Y01 804 C 1 
HETATM 29 C CAY Y01 . . . R 5 196.402 174.951 165.701 1 35.98 ? CAY Y01 804 C 1 
HETATM 30 O OAG Y01 . . . R 5 195.729 174.409 164.844 1 35.98 ? OAG Y01 804 C 1 
HETATM 31 C CAM Y01 . . . R 5 196.895 176.364 165.498 1 35.98 ? CAM Y01 804 C 1 
HETATM 32 C CAL Y01 . . . R 5 198.161 176.318 164.665 1 35.98 ? CAL Y01 804 C 1 
HETATM 33 C CAX Y01 . . . R 5 197.825 176.441 163.202 1 35.98 ? CAX Y01 804 C 1 
HETATM 34 O OAH Y01 . . . R 5 198.33 175.685 162.396 1 35.98 ? OAH Y01 804 C 1 
HETATM 35 O OAF Y01 . . . R 5 196.984 177.376 162.771 1 35.98 ? OAF Y01 804 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#