data_9M4W # _model_server_result.job_id oNd8XeHcOz-FAuvtpp8mDw _model_server_result.datetime_utc '2025-07-04 21:04:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9m4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":805}' # _entry.id 9M4W # _exptl.entry_id 9M4W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 442.545 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(-)-englerin A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9M4W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9M4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 N N N ? 6 S N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 556 A CYS 553 1_555 A SG CYS 561 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 556 B CYS 553 1_555 B SG CYS 561 B CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 556 C CYS 553 1_555 C SG CYS 561 C CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 556 D CYS 553 1_555 D SG CYS 561 D CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A ND1 HIS 175 A HIS 172 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A SG CYS 179 A CYS 176 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A SG CYS 181 A CYS 178 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 184 A CYS 181 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 B ND1 HIS 175 B HIS 172 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 B SG CYS 179 B CYS 176 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 B SG CYS 181 B CYS 178 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 B SG CYS 184 B CYS 181 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 C ND1 HIS 175 C HIS 172 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 C SG CYS 179 C CYS 176 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 C SG CYS 181 C CYS 178 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc12 C SG CYS 184 C CYS 181 1_555 O ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc13 D ND1 HIS 175 D HIS 172 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc14 D SG CYS 179 D CYS 176 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 D SG CYS 181 D CYS 178 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc16 D SG CYS 184 D CYS 181 1_555 T ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C26 H34 O6' _chem_comp.formula_weight 442.545 _chem_comp.id A1L55 _chem_comp.mon_nstd_flag . _chem_comp.name '(-)-englerin A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 A1L55 sing 1 n n C14 C13 A1L55 sing 2 n n C13 O16 A1L55 doub 3 n n C13 O12 A1L55 sing 4 n n O12 C11 A1L55 sing 5 n n C18 C17 A1L55 sing 6 n n C24 C19 A1L55 sing 7 n n C24 C23 A1L55 sing 8 n n C11 C17 A1L55 sing 9 n n C11 C10 A1L55 sing 10 n n C17 C19 A1L55 sing 11 n n C17 O09 A1L55 sing 12 n n C19 C20 A1L55 sing 13 n n C23 C21 A1L55 sing 14 n n O09 C05 A1L55 sing 15 n n C10 C05 A1L55 sing 16 n n C20 C21 A1L55 sing 17 n n C20 C04 A1L55 sing 18 n n C05 C04 A1L55 sing 19 n n C05 C06 A1L55 sing 20 n n C21 C22 A1L55 sing 21 n n C08 C06 A1L55 sing 22 n n C04 O03 A1L55 sing 23 n n C06 C07 A1L55 sing 24 n n O03 C02 A1L55 sing 25 n n C02 O01 A1L55 doub 26 n n C02 C25 A1L55 sing 27 n n C25 C26 A1L55 doub 28 e n C26 C27 A1L55 sing 29 n n C28 C27 A1L55 doub 30 n y C28 C29 A1L55 sing 31 n y C27 C32 A1L55 sing 32 n y C29 C30 A1L55 doub 33 n y C32 C31 A1L55 doub 34 n y C30 C31 A1L55 sing 35 n y C10 H1 A1L55 sing 36 n n C10 H2 A1L55 sing 37 n n C18 H3 A1L55 sing 38 n n C18 H4 A1L55 sing 39 n n C18 H5 A1L55 sing 40 n n C20 H6 A1L55 sing 41 n n C21 H7 A1L55 sing 42 n n C22 H8 A1L55 sing 43 n n C22 H9 A1L55 sing 44 n n C22 H10 A1L55 sing 45 n n C23 H11 A1L55 sing 46 n n C23 H12 A1L55 sing 47 n n C24 H13 A1L55 sing 48 n n C24 H14 A1L55 sing 49 n n C04 H15 A1L55 sing 50 n n C06 H16 A1L55 sing 51 n n C07 H17 A1L55 sing 52 n n C07 H18 A1L55 sing 53 n n C07 H19 A1L55 sing 54 n n C08 H20 A1L55 sing 55 n n C08 H21 A1L55 sing 56 n n C08 H22 A1L55 sing 57 n n C11 H23 A1L55 sing 58 n n C14 H24 A1L55 sing 59 n n C14 H25 A1L55 sing 60 n n C19 H26 A1L55 sing 61 n n C25 H27 A1L55 sing 62 n n C26 H28 A1L55 sing 63 n n C28 H29 A1L55 sing 64 n n C29 H30 A1L55 sing 65 n n C30 H31 A1L55 sing 66 n n C31 H32 A1L55 sing 67 n n C32 H33 A1L55 sing 68 n n O15 H34 A1L55 sing 69 n n # _atom_sites.entry_id 9M4W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 801 800 ZN ZN . F 3 PTY A 1 802 804 PTY PTY . G 4 POV A 1 803 901 POV POV . H 5 Y01 A 1 804 1001 Y01 Y01 . I 6 A1L55 A 1 805 1002 A1L55 LIG . J 2 ZN B 1 801 800 ZN ZN . K 3 PTY B 1 802 804 PTY PTY . L 4 POV B 1 803 901 POV POV . M 5 Y01 B 1 804 1001 Y01 Y01 . N 6 A1L55 B 1 805 1002 A1L55 LIG . O 2 ZN C 1 801 800 ZN ZN . P 3 PTY C 1 802 804 PTY PTY . Q 4 POV C 1 803 901 POV POV . R 5 Y01 C 1 804 1001 Y01 Y01 . S 6 A1L55 C 1 805 1002 A1L55 LIG . T 2 ZN D 1 801 800 ZN ZN . U 3 PTY D 1 802 804 PTY PTY . V 4 POV D 1 803 901 POV POV . W 5 Y01 D 1 804 1001 Y01 Y01 . X 6 A1L55 D 1 805 1002 A1L55 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1L55 . . . I 6 162.613 149.788 186.521 1 25.94 ? C10 A1L55 805 A 1 HETATM 2 C C13 A1L55 . . . I 6 163.131 149.94 190.077 1 25.94 ? C13 A1L55 805 A 1 HETATM 3 C C17 A1L55 . . . I 6 163.443 147.753 187.577 1 25.94 ? C17 A1L55 805 A 1 HETATM 4 C C18 A1L55 . . . I 6 163.229 146.817 188.788 1 25.94 ? C18 A1L55 805 A 1 HETATM 5 C C20 A1L55 . . . I 6 165.12 148.582 185.81 1 25.94 ? C20 A1L55 805 A 1 HETATM 6 C C21 A1L55 . . . I 6 166.574 148.238 185.43 1 25.94 ? C21 A1L55 805 A 1 HETATM 7 C C22 A1L55 . . . I 6 166.613 147.205 184.318 1 25.94 ? C22 A1L55 805 A 1 HETATM 8 C C23 A1L55 . . . I 6 167.23 147.745 186.747 1 25.94 ? C23 A1L55 805 A 1 HETATM 9 C C24 A1L55 . . . I 6 166.106 147.571 187.784 1 25.94 ? C24 A1L55 805 A 1 HETATM 10 C C02 A1L55 . . . I 6 164.492 149.421 182.392 1 25.94 ? C02 A1L55 805 A 1 HETATM 11 C C04 A1L55 . . . I 6 164.041 148.529 184.719 1 25.94 ? C04 A1L55 805 A 1 HETATM 12 C C05 A1L55 . . . I 6 162.607 148.607 185.552 1 25.94 ? C05 A1L55 805 A 1 HETATM 13 C C06 A1L55 . . . I 6 161.355 148.562 184.616 1 25.94 ? C06 A1L55 805 A 1 HETATM 14 C C07 A1L55 . . . I 6 161.394 147.516 183.491 1 25.94 ? C07 A1L55 805 A 1 HETATM 15 C C08 A1L55 . . . I 6 161.016 149.926 184.005 1 25.94 ? C08 A1L55 805 A 1 HETATM 16 C C11 A1L55 . . . I 6 163.242 149.281 187.839 1 25.94 ? C11 A1L55 805 A 1 HETATM 17 C C14 A1L55 . . . I 6 162.359 150.107 191.312 1 25.94 ? C14 A1L55 805 A 1 HETATM 18 C C19 A1L55 . . . I 6 164.84 147.531 186.93 1 25.94 ? C19 A1L55 805 A 1 HETATM 19 C C25 A1L55 . . . I 6 164.805 150.539 181.373 1 25.94 ? C25 A1L55 805 A 1 HETATM 20 C C26 A1L55 . . . I 6 165.208 151.802 181.674 1 25.94 ? C26 A1L55 805 A 1 HETATM 21 C C27 A1L55 . . . I 6 165.559 153.022 180.786 1 25.94 ? C27 A1L55 805 A 1 HETATM 22 C C28 A1L55 . . . I 6 165.041 153.203 179.494 1 25.94 ? C28 A1L55 805 A 1 HETATM 23 C C29 A1L55 . . . I 6 165.345 154.311 178.678 1 25.94 ? C29 A1L55 805 A 1 HETATM 24 C C30 A1L55 . . . I 6 166.207 155.328 179.114 1 25.94 ? C30 A1L55 805 A 1 HETATM 25 C C31 A1L55 . . . I 6 166.738 155.18 180.399 1 25.94 ? C31 A1L55 805 A 1 HETATM 26 C C32 A1L55 . . . I 6 166.414 154.06 181.197 1 25.94 ? C32 A1L55 805 A 1 HETATM 27 O O01 A1L55 . . . I 6 164.409 148.257 182.051 1 25.94 ? O01 A1L55 805 A 1 HETATM 28 O O03 A1L55 . . . I 6 164.279 149.634 183.781 1 25.94 ? O03 A1L55 805 A 1 HETATM 29 O O09 A1L55 . . . I 6 162.553 147.489 186.481 1 25.94 ? O09 A1L55 805 A 1 HETATM 30 O O12 A1L55 . . . I 6 162.461 149.549 188.963 1 25.94 ? O12 A1L55 805 A 1 HETATM 31 O O15 A1L55 . . . I 6 162.435 148.899 192.001 1 25.94 ? O15 A1L55 805 A 1 HETATM 32 O O16 A1L55 . . . I 6 164.353 150.118 189.954 1 25.94 ? O16 A1L55 805 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #