data_9MDC # _model_server_result.job_id iUNmBIkki9uq8USg6yicgw _model_server_result.datetime_utc '2025-07-13 14:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9MDC # _exptl.entry_id 9MDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MDC _cell.length_a 129.03 _cell.length_b 51.12 _cell.length_c 60.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 69 A GLU 225 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OE1 GLU 69 A GLU 225 1_555 F MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 A OD1 ASP 71 A ASP 227 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A OD2 ASP 71 A ASP 227 1_555 F MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 A OD2 ASP 163 A ASP 319 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 A NE2 HIS 234 A HIS 390 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc7 A SG CYS 240 A CYS 396 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 A SG CYS 241 A CYS 397 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc9 A SG CYS 248 A CYS 404 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc10 C N3 A1BJA . A A1BJA 602 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc11 C O1 A1BJA . A A1BJA 602 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc12 D O2A ANP . A ANP 603 1_555 E MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc13 D O2G ANP . A ANP 603 1_555 F MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 D O2B ANP . A ANP 603 1_555 F MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc15 D O2A ANP . A ANP 603 1_555 F MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc16 F MN MN . A MN 605 1_555 G O HOH . A HOH 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9MDC _atom_sites.fract_transf_matrix[1][1] 0.00775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 A1BJA A 1 602 601 A1BJA UNL . D 4 ANP A 1 603 1 ANP ANP . E 5 MN A 1 604 1 MN MN . F 5 MN A 1 605 2 MN MN . G 6 HOH A 1 701 188 HOH HOH . G 6 HOH A 2 702 196 HOH HOH . G 6 HOH A 3 703 154 HOH HOH . G 6 HOH A 4 704 203 HOH HOH . G 6 HOH A 5 705 78 HOH HOH . G 6 HOH A 6 706 75 HOH HOH . G 6 HOH A 7 707 119 HOH HOH . G 6 HOH A 8 708 42 HOH HOH . G 6 HOH A 9 709 123 HOH HOH . G 6 HOH A 10 710 12 HOH HOH . G 6 HOH A 11 711 160 HOH HOH . G 6 HOH A 12 712 102 HOH HOH . G 6 HOH A 13 713 146 HOH HOH . G 6 HOH A 14 714 51 HOH HOH . G 6 HOH A 15 715 62 HOH HOH . G 6 HOH A 16 716 114 HOH HOH . G 6 HOH A 17 717 103 HOH HOH . G 6 HOH A 18 718 56 HOH HOH . G 6 HOH A 19 719 150 HOH HOH . G 6 HOH A 20 720 200 HOH HOH . G 6 HOH A 21 721 14 HOH HOH . G 6 HOH A 22 722 121 HOH HOH . G 6 HOH A 23 723 54 HOH HOH . G 6 HOH A 24 724 31 HOH HOH . G 6 HOH A 25 725 94 HOH HOH . G 6 HOH A 26 726 80 HOH HOH . G 6 HOH A 27 727 33 HOH HOH . G 6 HOH A 28 728 8 HOH HOH . G 6 HOH A 29 729 2 HOH HOH . G 6 HOH A 30 730 17 HOH HOH . G 6 HOH A 31 731 24 HOH HOH . G 6 HOH A 32 732 29 HOH HOH . G 6 HOH A 33 733 9 HOH HOH . G 6 HOH A 34 734 69 HOH HOH . G 6 HOH A 35 735 4 HOH HOH . G 6 HOH A 36 736 87 HOH HOH . G 6 HOH A 37 737 49 HOH HOH . G 6 HOH A 38 738 3 HOH HOH . G 6 HOH A 39 739 10 HOH HOH . G 6 HOH A 40 740 116 HOH HOH . G 6 HOH A 41 741 27 HOH HOH . G 6 HOH A 42 742 214 HOH HOH . G 6 HOH A 43 743 18 HOH HOH . G 6 HOH A 44 744 149 HOH HOH . G 6 HOH A 45 745 136 HOH HOH . G 6 HOH A 46 746 162 HOH HOH . G 6 HOH A 47 747 46 HOH HOH . G 6 HOH A 48 748 16 HOH HOH . G 6 HOH A 49 749 39 HOH HOH . G 6 HOH A 50 750 111 HOH HOH . G 6 HOH A 51 751 53 HOH HOH . G 6 HOH A 52 752 165 HOH HOH . G 6 HOH A 53 753 131 HOH HOH . G 6 HOH A 54 754 20 HOH HOH . G 6 HOH A 55 755 139 HOH HOH . G 6 HOH A 56 756 81 HOH HOH . G 6 HOH A 57 757 105 HOH HOH . G 6 HOH A 58 758 216 HOH HOH . G 6 HOH A 59 759 74 HOH HOH . G 6 HOH A 60 760 83 HOH HOH . G 6 HOH A 61 761 179 HOH HOH . G 6 HOH A 62 762 6 HOH HOH . G 6 HOH A 63 763 13 HOH HOH . G 6 HOH A 64 764 128 HOH HOH . G 6 HOH A 65 765 21 HOH HOH . G 6 HOH A 66 766 212 HOH HOH . G 6 HOH A 67 767 19 HOH HOH . G 6 HOH A 68 768 86 HOH HOH . G 6 HOH A 69 769 30 HOH HOH . G 6 HOH A 70 770 222 HOH HOH . G 6 HOH A 71 771 43 HOH HOH . G 6 HOH A 72 772 197 HOH HOH . G 6 HOH A 73 773 65 HOH HOH . G 6 HOH A 74 774 15 HOH HOH . G 6 HOH A 75 775 50 HOH HOH . G 6 HOH A 76 776 90 HOH HOH . G 6 HOH A 77 777 5 HOH HOH . G 6 HOH A 78 778 153 HOH HOH . G 6 HOH A 79 779 40 HOH HOH . G 6 HOH A 80 780 71 HOH HOH . G 6 HOH A 81 781 22 HOH HOH . G 6 HOH A 82 782 57 HOH HOH . G 6 HOH A 83 783 147 HOH HOH . G 6 HOH A 84 784 224 HOH HOH . G 6 HOH A 85 785 176 HOH HOH . G 6 HOH A 86 786 82 HOH HOH . G 6 HOH A 87 787 221 HOH HOH . G 6 HOH A 88 788 76 HOH HOH . G 6 HOH A 89 789 38 HOH HOH . G 6 HOH A 90 790 64 HOH HOH . G 6 HOH A 91 791 88 HOH HOH . G 6 HOH A 92 792 217 HOH HOH . G 6 HOH A 93 793 202 HOH HOH . G 6 HOH A 94 794 163 HOH HOH . G 6 HOH A 95 795 100 HOH HOH . G 6 HOH A 96 796 95 HOH HOH . G 6 HOH A 97 797 129 HOH HOH . G 6 HOH A 98 798 226 HOH HOH . G 6 HOH A 99 799 41 HOH HOH . G 6 HOH A 100 800 127 HOH HOH . G 6 HOH A 101 801 207 HOH HOH . G 6 HOH A 102 802 187 HOH HOH . G 6 HOH A 103 803 11 HOH HOH . G 6 HOH A 104 804 120 HOH HOH . G 6 HOH A 105 805 47 HOH HOH . G 6 HOH A 106 806 104 HOH HOH . G 6 HOH A 107 807 108 HOH HOH . G 6 HOH A 108 808 151 HOH HOH . G 6 HOH A 109 809 7 HOH HOH . G 6 HOH A 110 810 220 HOH HOH . G 6 HOH A 111 811 130 HOH HOH . G 6 HOH A 112 812 28 HOH HOH . G 6 HOH A 113 813 79 HOH HOH . G 6 HOH A 114 814 132 HOH HOH . G 6 HOH A 115 815 89 HOH HOH . G 6 HOH A 116 816 118 HOH HOH . G 6 HOH A 117 817 72 HOH HOH . G 6 HOH A 118 818 191 HOH HOH . G 6 HOH A 119 819 219 HOH HOH . G 6 HOH A 120 820 215 HOH HOH . G 6 HOH A 121 821 99 HOH HOH . G 6 HOH A 122 822 186 HOH HOH . G 6 HOH A 123 823 138 HOH HOH . G 6 HOH A 124 824 112 HOH HOH . G 6 HOH A 125 825 206 HOH HOH . G 6 HOH A 126 826 55 HOH HOH . G 6 HOH A 127 827 44 HOH HOH . G 6 HOH A 128 828 61 HOH HOH . G 6 HOH A 129 829 204 HOH HOH . G 6 HOH A 130 830 201 HOH HOH . G 6 HOH A 131 831 32 HOH HOH . G 6 HOH A 132 832 73 HOH HOH . G 6 HOH A 133 833 209 HOH HOH . G 6 HOH A 134 834 213 HOH HOH . G 6 HOH A 135 835 195 HOH HOH . G 6 HOH A 136 836 227 HOH HOH . G 6 HOH A 137 837 198 HOH HOH . G 6 HOH A 138 838 199 HOH HOH . G 6 HOH A 139 839 135 HOH HOH . G 6 HOH A 140 840 211 HOH HOH . G 6 HOH A 141 841 193 HOH HOH . G 6 HOH A 142 842 177 HOH HOH . G 6 HOH A 143 843 228 HOH HOH . G 6 HOH A 144 844 218 HOH HOH . G 6 HOH A 145 845 180 HOH HOH . G 6 HOH A 146 846 190 HOH HOH . G 6 HOH A 147 847 52 HOH HOH . G 6 HOH A 148 848 223 HOH HOH . G 6 HOH A 149 849 192 HOH HOH . G 6 HOH A 150 850 225 HOH HOH . G 6 HOH A 151 851 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.636 _atom_site.Cartn_y 15.829 _atom_site.Cartn_z -0.376 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #