data_9MDT # _model_server_result.job_id OhaB2AsfWisIDziUJec1qA _model_server_result.datetime_utc '2025-01-10 20:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":503}' # _entry.id 9MDT # _exptl.entry_id 9MDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MDT _cell.length_a 87.109 _cell.length_b 87.109 _cell.length_c 478.237 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 O N N ? 5 P N N ? 5 U N N ? 5 V N N ? 5 X N N ? 5 Y N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 348 n n P O2 PO4 sing 349 n n P O3 PO4 sing 350 n n P O4 PO4 sing 351 n n # _atom_sites.entry_id 9MDT _atom_sites.fract_transf_matrix[1][1] 0.01148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 501 101 ATP ATP . F 3 PPV A 1 502 201 PPV PPV . G 4 AMP A 1 503 301 AMP AMP . H 5 PO4 A 1 504 403 PO4 PO4 . I 5 PO4 A 1 505 405 PO4 PO4 . J 6 CL A 1 506 501 CL CL . K 6 CL A 1 507 505 CL CL . L 2 ATP B 1 501 102 ATP ATP . M 2 ATP B 1 502 103 ATP ATP . N 3 PPV B 1 503 202 PPV PPV . O 5 PO4 B 1 504 404 PO4 PO4 . P 5 PO4 B 1 505 406 PO4 PO4 . Q 6 CL B 1 506 502 CL CL . R 6 CL B 1 507 503 CL CL . S 6 CL B 1 508 1 CL CL . T 3 PPV C 1 501 203 PPV PPV . U 5 PO4 C 1 502 401 PO4 PO4 . V 5 PO4 C 1 503 408 PO4 PO4 . W 3 PPV D 1 501 204 PPV PPV . X 5 PO4 D 1 502 402 PO4 PO4 . Y 5 PO4 D 1 503 407 PO4 PO4 . Z 6 CL D 1 504 504 CL CL . AA 6 CL D 1 505 2 CL CL . BA 7 HOH A 1 601 87 HOH HOH . BA 7 HOH A 2 602 78 HOH HOH . BA 7 HOH A 3 603 84 HOH HOH . BA 7 HOH A 4 604 60 HOH HOH . BA 7 HOH A 5 605 153 HOH HOH . BA 7 HOH A 6 606 120 HOH HOH . BA 7 HOH A 7 607 104 HOH HOH . BA 7 HOH A 8 608 88 HOH HOH . BA 7 HOH A 9 609 18 HOH HOH . BA 7 HOH A 10 610 160 HOH HOH . BA 7 HOH A 11 611 42 HOH HOH . BA 7 HOH A 12 612 57 HOH HOH . BA 7 HOH A 13 613 137 HOH HOH . BA 7 HOH A 14 614 67 HOH HOH . BA 7 HOH A 15 615 150 HOH HOH . BA 7 HOH A 16 616 50 HOH HOH . BA 7 HOH A 17 617 22 HOH HOH . BA 7 HOH A 18 618 28 HOH HOH . BA 7 HOH A 19 619 167 HOH HOH . BA 7 HOH A 20 620 23 HOH HOH . BA 7 HOH A 21 621 71 HOH HOH . BA 7 HOH A 22 622 72 HOH HOH . BA 7 HOH A 23 623 86 HOH HOH . BA 7 HOH A 24 624 136 HOH HOH . BA 7 HOH A 25 625 70 HOH HOH . BA 7 HOH A 26 626 12 HOH HOH . BA 7 HOH A 27 627 19 HOH HOH . BA 7 HOH A 28 628 47 HOH HOH . BA 7 HOH A 29 629 69 HOH HOH . BA 7 HOH A 30 630 125 HOH HOH . BA 7 HOH A 31 631 122 HOH HOH . BA 7 HOH A 32 632 8 HOH HOH . BA 7 HOH A 33 633 143 HOH HOH . BA 7 HOH A 34 634 10 HOH HOH . BA 7 HOH A 35 635 103 HOH HOH . BA 7 HOH A 36 636 21 HOH HOH . BA 7 HOH A 37 637 126 HOH HOH . BA 7 HOH A 38 638 108 HOH HOH . BA 7 HOH A 39 639 5 HOH HOH . BA 7 HOH A 40 640 121 HOH HOH . BA 7 HOH A 41 641 38 HOH HOH . BA 7 HOH A 42 642 119 HOH HOH . BA 7 HOH A 43 643 95 HOH HOH . BA 7 HOH A 44 644 68 HOH HOH . BA 7 HOH A 45 645 139 HOH HOH . BA 7 HOH A 46 646 177 HOH HOH . BA 7 HOH A 47 647 92 HOH HOH . BA 7 HOH A 48 648 1 HOH HOH . BA 7 HOH A 49 649 159 HOH HOH . BA 7 HOH A 50 650 131 HOH HOH . BA 7 HOH A 51 651 147 HOH HOH . BA 7 HOH A 52 652 146 HOH HOH . BA 7 HOH A 53 653 32 HOH HOH . BA 7 HOH A 54 654 144 HOH HOH . BA 7 HOH A 55 655 48 HOH HOH . CA 7 HOH B 1 601 133 HOH HOH . CA 7 HOH B 2 602 80 HOH HOH . CA 7 HOH B 3 603 29 HOH HOH . CA 7 HOH B 4 604 115 HOH HOH . CA 7 HOH B 5 605 41 HOH HOH . CA 7 HOH B 6 606 116 HOH HOH . CA 7 HOH B 7 607 112 HOH HOH . CA 7 HOH B 8 608 148 HOH HOH . CA 7 HOH B 9 609 49 HOH HOH . CA 7 HOH B 10 610 156 HOH HOH . CA 7 HOH B 11 611 62 HOH HOH . CA 7 HOH B 12 612 82 HOH HOH . CA 7 HOH B 13 613 17 HOH HOH . CA 7 HOH B 14 614 152 HOH HOH . CA 7 HOH B 15 615 79 HOH HOH . CA 7 HOH B 16 616 155 HOH HOH . CA 7 HOH B 17 617 2 HOH HOH . CA 7 HOH B 18 618 173 HOH HOH . CA 7 HOH B 19 619 9 HOH HOH . CA 7 HOH B 20 620 96 HOH HOH . CA 7 HOH B 21 621 52 HOH HOH . CA 7 HOH B 22 622 61 HOH HOH . CA 7 HOH B 23 623 36 HOH HOH . CA 7 HOH B 24 624 34 HOH HOH . CA 7 HOH B 25 625 53 HOH HOH . CA 7 HOH B 26 626 13 HOH HOH . CA 7 HOH B 27 627 151 HOH HOH . CA 7 HOH B 28 628 24 HOH HOH . CA 7 HOH B 29 629 6 HOH HOH . CA 7 HOH B 30 630 161 HOH HOH . CA 7 HOH B 31 631 117 HOH HOH . CA 7 HOH B 32 632 73 HOH HOH . CA 7 HOH B 33 633 44 HOH HOH . CA 7 HOH B 34 634 172 HOH HOH . CA 7 HOH B 35 635 54 HOH HOH . CA 7 HOH B 36 636 97 HOH HOH . CA 7 HOH B 37 637 157 HOH HOH . CA 7 HOH B 38 638 59 HOH HOH . CA 7 HOH B 39 639 30 HOH HOH . CA 7 HOH B 40 640 178 HOH HOH . CA 7 HOH B 41 641 55 HOH HOH . DA 7 HOH C 1 601 85 HOH HOH . DA 7 HOH C 2 602 16 HOH HOH . DA 7 HOH C 3 603 33 HOH HOH . DA 7 HOH C 4 604 51 HOH HOH . DA 7 HOH C 5 605 45 HOH HOH . DA 7 HOH C 6 606 77 HOH HOH . DA 7 HOH C 7 607 105 HOH HOH . DA 7 HOH C 8 608 4 HOH HOH . DA 7 HOH C 9 609 39 HOH HOH . DA 7 HOH C 10 610 20 HOH HOH . DA 7 HOH C 11 611 123 HOH HOH . DA 7 HOH C 12 612 37 HOH HOH . DA 7 HOH C 13 613 140 HOH HOH . DA 7 HOH C 14 614 109 HOH HOH . DA 7 HOH C 15 615 98 HOH HOH . DA 7 HOH C 16 616 7 HOH HOH . DA 7 HOH C 17 617 56 HOH HOH . DA 7 HOH C 18 618 106 HOH HOH . DA 7 HOH C 19 619 102 HOH HOH . DA 7 HOH C 20 620 101 HOH HOH . DA 7 HOH C 21 621 35 HOH HOH . DA 7 HOH C 22 622 135 HOH HOH . DA 7 HOH C 23 623 138 HOH HOH . DA 7 HOH C 24 624 100 HOH HOH . DA 7 HOH C 25 625 76 HOH HOH . DA 7 HOH C 26 626 14 HOH HOH . DA 7 HOH C 27 627 171 HOH HOH . DA 7 HOH C 28 628 154 HOH HOH . DA 7 HOH C 29 629 90 HOH HOH . DA 7 HOH C 30 630 142 HOH HOH . DA 7 HOH C 31 631 134 HOH HOH . DA 7 HOH C 32 632 107 HOH HOH . DA 7 HOH C 33 633 149 HOH HOH . DA 7 HOH C 34 634 40 HOH HOH . DA 7 HOH C 35 635 75 HOH HOH . DA 7 HOH C 36 636 11 HOH HOH . DA 7 HOH C 37 637 83 HOH HOH . DA 7 HOH C 38 638 99 HOH HOH . DA 7 HOH C 39 639 127 HOH HOH . DA 7 HOH C 40 640 27 HOH HOH . DA 7 HOH C 41 641 46 HOH HOH . DA 7 HOH C 42 642 91 HOH HOH . DA 7 HOH C 43 643 124 HOH HOH . DA 7 HOH C 44 644 129 HOH HOH . DA 7 HOH C 45 645 26 HOH HOH . DA 7 HOH C 46 646 74 HOH HOH . DA 7 HOH C 47 647 118 HOH HOH . EA 7 HOH D 1 601 63 HOH HOH . EA 7 HOH D 2 602 58 HOH HOH . EA 7 HOH D 3 603 132 HOH HOH . EA 7 HOH D 4 604 179 HOH HOH . EA 7 HOH D 5 605 165 HOH HOH . EA 7 HOH D 6 606 43 HOH HOH . EA 7 HOH D 7 607 164 HOH HOH . EA 7 HOH D 8 608 170 HOH HOH . EA 7 HOH D 9 609 66 HOH HOH . EA 7 HOH D 10 610 169 HOH HOH . EA 7 HOH D 11 611 166 HOH HOH . EA 7 HOH D 12 612 168 HOH HOH . EA 7 HOH D 13 613 110 HOH HOH . EA 7 HOH D 14 614 111 HOH HOH . EA 7 HOH D 15 615 65 HOH HOH . EA 7 HOH D 16 616 158 HOH HOH . EA 7 HOH D 17 617 141 HOH HOH . EA 7 HOH D 18 618 25 HOH HOH . EA 7 HOH D 19 619 81 HOH HOH . EA 7 HOH D 20 620 128 HOH HOH . EA 7 HOH D 21 621 114 HOH HOH . EA 7 HOH D 22 622 15 HOH HOH . EA 7 HOH D 23 623 174 HOH HOH . EA 7 HOH D 24 624 94 HOH HOH . EA 7 HOH D 25 625 163 HOH HOH . EA 7 HOH D 26 626 176 HOH HOH . EA 7 HOH D 27 627 93 HOH HOH . EA 7 HOH D 28 628 64 HOH HOH . EA 7 HOH D 29 629 3 HOH HOH . EA 7 HOH D 30 630 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . Y 5 48.235 27.846 -8.621 1 116.23 ? P PO4 503 D 1 HETATM 2 O O1 PO4 . . . Y 5 49.667 28.341 -8.216 1 107.03 ? O1 PO4 503 D 1 HETATM 3 O O2 PO4 . . . Y 5 47.442 29.048 -9.241 1 93.8 ? O2 PO4 503 D 1 HETATM 4 O O3 PO4 . . . Y 5 48.365 26.687 -9.674 1 101.07 ? O3 PO4 503 D 1 HETATM 5 O O4 PO4 . . . Y 5 47.469 27.31 -7.359 1 93.79 ? O4 PO4 503 D 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #