data_9MEA # _model_server_result.job_id 89_gtXQlTzmgZjYDhdrHYg _model_server_result.datetime_utc '2025-01-10 20:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 9MEA # _exptl.entry_id 9MEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MEA _cell.length_a 87.527 _cell.length_b 87.527 _cell.length_c 475.639 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 K N N ? 4 L N N ? 4 O N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 9MEA _atom_sites.fract_transf_matrix[1][1] 0.011425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 501 201 FBP FBP . F 3 PO4 A 1 502 302 PO4 PO4 . G 4 AMP B 1 501 104 AMP AMP . H 2 FBP B 1 502 202 FBP FBP . I 3 PO4 B 1 503 303 PO4 PO4 . J 3 PO4 B 1 504 304 PO4 PO4 . K 4 AMP C 1 501 101 AMP AMP . L 4 AMP C 1 502 103 AMP AMP . M 2 FBP C 1 503 203 FBP FBP . N 3 PO4 C 1 504 301 PO4 PO4 . O 4 AMP D 1 501 102 AMP AMP . P 2 FBP D 1 502 204 FBP FBP . Q 5 HOH A 1 601 1 HOH HOH . Q 5 HOH A 2 602 2 HOH HOH . R 5 HOH B 1 601 5 HOH HOH . R 5 HOH B 2 602 9 HOH HOH . R 5 HOH B 3 603 8 HOH HOH . R 5 HOH B 4 604 4 HOH HOH . S 5 HOH C 1 601 7 HOH HOH . S 5 HOH C 2 602 11 HOH HOH . S 5 HOH C 3 603 10 HOH HOH . S 5 HOH C 4 604 3 HOH HOH . T 5 HOH D 1 601 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . K 4 39.159 7.496 4.454 1 66.47 ? P AMP 501 C 1 HETATM 2 O O1P AMP . . . K 4 40.37 8.321 4.846 1 60.96 ? O1P AMP 501 C 1 HETATM 3 O O2P AMP . . . K 4 37.885 8.3 4.318 1 65.41 ? O2P AMP 501 C 1 HETATM 4 O O3P AMP . . . K 4 38.988 6.196 5.211 1 60.23 ? O3P AMP 501 C 1 HETATM 5 O O5' AMP . . . K 4 39.476 7.048 2.957 1 63.43 ? O5' AMP 501 C 1 HETATM 6 C C5' AMP . . . K 4 40.717 6.437 2.627 1 60.32 ? C5' AMP 501 C 1 HETATM 7 C C4' AMP . . . K 4 40.828 6.135 1.152 1 55.57 ? C4' AMP 501 C 1 HETATM 8 O O4' AMP . . . K 4 39.779 5.209 0.763 1 56.65 ? O4' AMP 501 C 1 HETATM 9 C C3' AMP . . . K 4 40.702 7.339 0.215 1 57.35 ? C3' AMP 501 C 1 HETATM 10 O O3' AMP . . . K 4 41.635 7.199 -0.859 1 54.13 ? O3' AMP 501 C 1 HETATM 11 C C2' AMP . . . K 4 39.269 7.224 -0.31 1 59.02 ? C2' AMP 501 C 1 HETATM 12 O O2' AMP . . . K 4 39.041 7.84 -1.563 1 61.13 ? O2' AMP 501 C 1 HETATM 13 C C1' AMP . . . K 4 39.099 5.712 -0.37 1 56.84 ? C1' AMP 501 C 1 HETATM 14 N N9 AMP . . . K 4 37.719 5.231 -0.305 1 56.18 ? N9 AMP 501 C 1 HETATM 15 C C8 AMP . . . K 4 36.756 5.689 0.518 1 56.26 ? C8 AMP 501 C 1 HETATM 16 N N7 AMP . . . K 4 35.602 5.009 0.325 1 57.15 ? N7 AMP 501 C 1 HETATM 17 C C5 AMP . . . K 4 35.831 4.091 -0.633 1 55.13 ? C5 AMP 501 C 1 HETATM 18 C C6 AMP . . . K 4 35.038 3.042 -1.306 1 53.81 ? C6 AMP 501 C 1 HETATM 19 N N6 AMP . . . K 4 33.743 2.866 -0.952 1 55.19 ? N6 AMP 501 C 1 HETATM 20 N N1 AMP . . . K 4 35.643 2.284 -2.256 1 52.97 ? N1 AMP 501 C 1 HETATM 21 C C2 AMP . . . K 4 36.938 2.471 -2.592 1 52.18 ? C2 AMP 501 C 1 HETATM 22 N N3 AMP . . . K 4 37.716 3.41 -2.011 1 56.37 ? N3 AMP 501 C 1 HETATM 23 C C4 AMP . . . K 4 37.229 4.237 -1.048 1 56.35 ? C4 AMP 501 C 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #