data_9MEA # _model_server_result.job_id 3YbFCXJ3J7A8XmtX0ctY5A _model_server_result.datetime_utc '2025-01-10 20:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 9MEA # _exptl.entry_id 9MEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MEA _cell.length_a 87.527 _cell.length_b 87.527 _cell.length_c 475.639 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 M N N ? 2 P N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 122 n n P1 O2P FBP sing 123 n n P1 O3P FBP sing 124 n n P1 O1 FBP sing 125 n n O2P HOP2 FBP sing 126 n n O3P HOP3 FBP sing 127 n n O1 C1 FBP sing 128 n n C1 C2 FBP sing 129 n n C1 H11 FBP sing 130 n n C1 H12 FBP sing 131 n n C2 O2 FBP sing 132 n n C2 C3 FBP sing 133 n n C2 O5 FBP sing 134 n n O2 HO2 FBP sing 135 n n C3 O3 FBP sing 136 n n C3 C4 FBP sing 137 n n C3 H3 FBP sing 138 n n O3 HO3 FBP sing 139 n n C4 O4 FBP sing 140 n n C4 C5 FBP sing 141 n n C4 H4 FBP sing 142 n n O4 HO4 FBP sing 143 n n C5 O5 FBP sing 144 n n C5 C6 FBP sing 145 n n C5 H5 FBP sing 146 n n C6 O6 FBP sing 147 n n C6 H61 FBP sing 148 n n C6 H62 FBP sing 149 n n O6 P2 FBP sing 150 n n P2 O4P FBP doub 151 n n P2 O5P FBP sing 152 n n P2 O6P FBP sing 153 n n O5P HOP5 FBP sing 154 n n O6P HOP6 FBP sing 155 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9MEA _atom_sites.fract_transf_matrix[1][1] 0.011425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FBP A 1 501 201 FBP FBP . F 3 PO4 A 1 502 302 PO4 PO4 . G 4 AMP B 1 501 104 AMP AMP . H 2 FBP B 1 502 202 FBP FBP . I 3 PO4 B 1 503 303 PO4 PO4 . J 3 PO4 B 1 504 304 PO4 PO4 . K 4 AMP C 1 501 101 AMP AMP . L 4 AMP C 1 502 103 AMP AMP . M 2 FBP C 1 503 203 FBP FBP . N 3 PO4 C 1 504 301 PO4 PO4 . O 4 AMP D 1 501 102 AMP AMP . P 2 FBP D 1 502 204 FBP FBP . Q 5 HOH A 1 601 1 HOH HOH . Q 5 HOH A 2 602 2 HOH HOH . R 5 HOH B 1 601 5 HOH HOH . R 5 HOH B 2 602 9 HOH HOH . R 5 HOH B 3 603 8 HOH HOH . R 5 HOH B 4 604 4 HOH HOH . S 5 HOH C 1 601 7 HOH HOH . S 5 HOH C 2 602 11 HOH HOH . S 5 HOH C 3 603 10 HOH HOH . S 5 HOH C 4 604 3 HOH HOH . T 5 HOH D 1 601 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . H 2 54.609 -0.063 -53.324 1 64.69 ? P1 FBP 502 B 1 HETATM 2 O O1P FBP . . . H 2 55.142 1.358 -53.373 1 65.71 ? O1P FBP 502 B 1 HETATM 3 O O2P FBP . . . H 2 54.739 -0.758 -54.663 1 63.01 ? O2P FBP 502 B 1 HETATM 4 O O3P FBP . . . H 2 53.152 -0.067 -52.895 1 60.56 ? O3P FBP 502 B 1 HETATM 5 O O1 FBP . . . H 2 55.48 -0.881 -52.202 1 57.41 ? O1 FBP 502 B 1 HETATM 6 C C1 FBP . . . H 2 55.145 -0.548 -50.852 1 57.51 ? C1 FBP 502 B 1 HETATM 7 C C2 FBP . . . H 2 56.113 -1.363 -49.978 1 58.14 ? C2 FBP 502 B 1 HETATM 8 O O2 FBP . . . H 2 55.441 -1.835 -48.822 1 57.76 ? O2 FBP 502 B 1 HETATM 9 C C3 FBP . . . H 2 57.389 -0.509 -49.579 1 55.61 ? C3 FBP 502 B 1 HETATM 10 O O3 FBP . . . H 2 57.203 0.173 -48.429 1 58.83 ? O3 FBP 502 B 1 HETATM 11 C C4 FBP . . . H 2 58.448 -1.567 -49.395 1 53.67 ? C4 FBP 502 B 1 HETATM 12 O O4 FBP . . . H 2 59.785 -0.993 -49.706 1 61.45 ? O4 FBP 502 B 1 HETATM 13 C C5 FBP . . . H 2 58.156 -2.492 -50.312 1 54.29 ? C5 FBP 502 B 1 HETATM 14 O O5 FBP . . . H 2 56.592 -2.328 -50.714 1 58.93 ? O5 FBP 502 B 1 HETATM 15 C C6 FBP . . . H 2 58.32 -3.926 -49.88 1 49.94 ? C6 FBP 502 B 1 HETATM 16 O O6 FBP . . . H 2 58.775 -4.607 -51.042 1 46.02 ? O6 FBP 502 B 1 HETATM 17 P P2 FBP . . . H 2 58.571 -6.222 -51.303 1 51.83 ? P2 FBP 502 B 1 HETATM 18 O O4P FBP . . . H 2 58.887 -6.975 -50.023 1 41.35 ? O4P FBP 502 B 1 HETATM 19 O O5P FBP . . . H 2 59.524 -6.634 -52.394 1 64.72 ? O5P FBP 502 B 1 HETATM 20 O O6P FBP . . . H 2 57.166 -6.52 -51.768 1 50.08 ? O6P FBP 502 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 95 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #