data_9MEC # _model_server_result.job_id FAKhOKxYjUwXKTft8XP2NQ _model_server_result.datetime_utc '2025-01-10 18:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 9MEC # _exptl.entry_id 9MEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MEC _cell.length_a 86.909 _cell.length_b 86.909 _cell.length_c 473.809 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 122 A ASP 114 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc2 G O31 PPV . A PPV 503 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc3 G O22 PPV . A PPV 503 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 345 n n O11 H11 PPV sing 346 n n P1 O21 PPV sing 347 n n P1 O31 PPV doub 348 n n P1 OPP PPV sing 349 n n O21 H21 PPV sing 350 n n OPP P2 PPV sing 351 n n P2 O12 PPV sing 352 n n P2 O22 PPV doub 353 n n P2 O32 PPV sing 354 n n O12 H12 PPV sing 355 n n O32 H32 PPV sing 356 n n # _atom_sites.entry_id 9MEC _atom_sites.fract_transf_matrix[1][1] 0.011506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 501 101 AMP AMP . F 2 AMP A 1 502 103 AMP AMP . G 3 PPV A 1 503 201 PPV PPV . H 4 GOL A 1 504 301 GOL GOL . I 5 G6P A 1 505 401 G6P G6P . J 6 PO4 A 1 506 506 PO4 PO4 . K 6 PO4 A 1 507 507 PO4 PO4 . L 7 CL A 1 508 601 CL CL . M 8 MG A 1 509 701 MG MG . N 2 AMP B 1 501 104 AMP AMP . O 5 G6P B 1 502 402 G6P G6P . P 6 PO4 B 1 503 501 PO4 PO4 . Q 6 PO4 B 1 504 503 PO4 PO4 . R 6 PO4 B 1 505 504 PO4 PO4 . S 6 PO4 B 1 506 508 PO4 PO4 . T 6 PO4 C 1 501 502 PO4 PO4 . U 6 PO4 C 1 502 505 PO4 PO4 . V 2 AMP D 1 501 102 AMP AMP . W 6 PO4 D 1 502 509 PO4 PO4 . X 9 HOH A 1 601 6 HOH HOH . Y 9 HOH B 1 601 1 HOH HOH . Y 9 HOH B 2 602 4 HOH HOH . Z 9 HOH C 1 601 2 HOH HOH . Z 9 HOH C 2 602 5 HOH HOH . AA 9 HOH D 1 601 7 HOH HOH . AA 9 HOH D 2 602 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . G 3 21.171 -21.516 -26.844 1 85.95 ? O11 PPV 503 A 1 HETATM 2 P P1 PPV . . . G 3 21.225 -20.233 -26.021 1 90.63 ? P1 PPV 503 A 1 HETATM 3 O O21 PPV . . . G 3 22.381 -19.299 -26.409 1 89.16 ? O21 PPV 503 A 1 HETATM 4 O O31 PPV . . . G 3 21.103 -20.461 -24.511 1 101.78 ? O31 PPV 503 A 1 HETATM 5 O OPP PPV . . . G 3 19.918 -19.301 -26.428 1 94.38 ? OPP PPV 503 A 1 HETATM 6 P P2 PPV . . . G 3 19.329 -17.85 -25.89 1 109.88 ? P2 PPV 503 A 1 HETATM 7 O O12 PPV . . . G 3 17.842 -17.819 -26.269 1 101.62 ? O12 PPV 503 A 1 HETATM 8 O O22 PPV . . . G 3 19.583 -17.816 -24.377 1 116.29 ? O22 PPV 503 A 1 HETATM 9 O O32 PPV . . . G 3 20.211 -16.861 -26.665 1 99.57 ? O32 PPV 503 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #