data_9MEC # _model_server_result.job_id B1c8pxlkLW5WExQWbwK0qg _model_server_result.datetime_utc '2025-01-10 18:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":505}' # _entry.id 9MEC # _exptl.entry_id 9MEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MEC _cell.length_a 86.909 _cell.length_b 86.909 _cell.length_c 473.809 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 122 A ASP 114 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc2 G O31 PPV . A PPV 503 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc3 G O22 PPV . A PPV 503 1_555 M MG MG . A MG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 122 n n C1 O1 G6P sing 123 n n C1 O5 G6P sing 124 n n C1 H1 G6P sing 125 n n C2 C3 G6P sing 126 n n C2 O2 G6P sing 127 n n C2 H2 G6P sing 128 n n C3 C4 G6P sing 129 n n C3 O3 G6P sing 130 n n C3 H3 G6P sing 131 n n C4 C5 G6P sing 132 n n C4 O4 G6P sing 133 n n C4 H4 G6P sing 134 n n C5 C6 G6P sing 135 n n C5 O5 G6P sing 136 n n C5 H5 G6P sing 137 n n C6 O6 G6P sing 138 n n C6 H61 G6P sing 139 n n C6 H62 G6P sing 140 n n O1 HO1 G6P sing 141 n n O2 HO2 G6P sing 142 n n O3 HO3 G6P sing 143 n n O4 HO4 G6P sing 144 n n O6 P G6P sing 145 n n P O1P G6P sing 146 n n P O2P G6P sing 147 n n P O3P G6P doub 148 n n O1P HO1P G6P sing 149 n n O2P HO2P G6P sing 150 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9MEC _atom_sites.fract_transf_matrix[1][1] 0.011506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 501 101 AMP AMP . F 2 AMP A 1 502 103 AMP AMP . G 3 PPV A 1 503 201 PPV PPV . H 4 GOL A 1 504 301 GOL GOL . I 5 G6P A 1 505 401 G6P G6P . J 6 PO4 A 1 506 506 PO4 PO4 . K 6 PO4 A 1 507 507 PO4 PO4 . L 7 CL A 1 508 601 CL CL . M 8 MG A 1 509 701 MG MG . N 2 AMP B 1 501 104 AMP AMP . O 5 G6P B 1 502 402 G6P G6P . P 6 PO4 B 1 503 501 PO4 PO4 . Q 6 PO4 B 1 504 503 PO4 PO4 . R 6 PO4 B 1 505 504 PO4 PO4 . S 6 PO4 B 1 506 508 PO4 PO4 . T 6 PO4 C 1 501 502 PO4 PO4 . U 6 PO4 C 1 502 505 PO4 PO4 . V 2 AMP D 1 501 102 AMP AMP . W 6 PO4 D 1 502 509 PO4 PO4 . X 9 HOH A 1 601 6 HOH HOH . Y 9 HOH B 1 601 1 HOH HOH . Y 9 HOH B 2 602 4 HOH HOH . Z 9 HOH C 1 601 2 HOH HOH . Z 9 HOH C 2 602 5 HOH HOH . AA 9 HOH D 1 601 7 HOH HOH . AA 9 HOH D 2 602 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . I 5 36.453 2.174 -8.671 1 68.62 ? C1 G6P 505 A 1 HETATM 2 C C2 G6P . . . I 5 37.597 1.566 -7.859 1 67.23 ? C2 G6P 505 A 1 HETATM 3 C C3 G6P . . . I 5 38.969 2.077 -8.181 1 70.73 ? C3 G6P 505 A 1 HETATM 4 C C4 G6P . . . I 5 38.972 3.15 -9.233 1 65.68 ? C4 G6P 505 A 1 HETATM 5 C C5 G6P . . . I 5 37.831 4.136 -9.039 1 62.67 ? C5 G6P 505 A 1 HETATM 6 C C6 G6P . . . I 5 37.904 5.309 -10.003 1 65.26 ? C6 G6P 505 A 1 HETATM 7 O O1 G6P . . . I 5 35.25 2.142 -7.918 1 71.24 ? O1 G6P 505 A 1 HETATM 8 O O2 G6P . . . I 5 37.426 1.772 -6.459 1 70.38 ? O2 G6P 505 A 1 HETATM 9 O O3 G6P . . . I 5 39.747 0.998 -8.698 1 71.55 ? O3 G6P 505 A 1 HETATM 10 O O4 G6P . . . I 5 40.158 3.884 -9.096 1 72.34 ? O4 G6P 505 A 1 HETATM 11 O O5 G6P . . . I 5 36.666 3.391 -9.298 1 64.84 ? O5 G6P 505 A 1 HETATM 12 O O6 G6P . . . I 5 38.529 6.426 -9.418 1 62.08 ? O6 G6P 505 A 1 HETATM 13 P P G6P . . . I 5 37.928 8.027 -9.669 1 58.6 ? P G6P 505 A 1 HETATM 14 O O1P G6P . . . I 5 37.664 8.516 -8.256 1 59.73 ? O1P G6P 505 A 1 HETATM 15 O O2P G6P . . . I 5 39.046 8.782 -10.375 1 56.27 ? O2P G6P 505 A 1 HETATM 16 O O3P G6P . . . I 5 36.669 7.876 -10.499 1 58.57 ? O3P G6P 505 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #