data_9MED # _model_server_result.job_id SPLKWphcNjHtpc-XgHA_Dw _model_server_result.datetime_utc '2024-12-22 03:00:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9med # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 9MED # _exptl.entry_id 9MED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MED _cell.length_a 86.875 _cell.length_b 86.875 _cell.length_c 475.979 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MED _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 Q N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id O32 _struct_conn.ptnr1_label_comp_id PPV _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PPV _struct_conn.ptnr1_auth_seq_id 503 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 505 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.846 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BG6 _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BG6 sing 109 n n C1 O1 BG6 sing 110 n n C1 O5 BG6 sing 111 n n C1 H1 BG6 sing 112 n n C2 C3 BG6 sing 113 n n C2 O2 BG6 sing 114 n n C2 H2 BG6 sing 115 n n O1 HO1 BG6 sing 116 n n O5 C5 BG6 sing 117 n n C3 C4 BG6 sing 118 n n C3 O3 BG6 sing 119 n n C3 H3 BG6 sing 120 n n O2 HO2 BG6 sing 121 n n C4 C5 BG6 sing 122 n n C4 O4 BG6 sing 123 n n C4 H4 BG6 sing 124 n n O3 HO3 BG6 sing 125 n n C5 C6 BG6 sing 126 n n C5 H5 BG6 sing 127 n n O4 HO4 BG6 sing 128 n n C6 O6 BG6 sing 129 n n C6 H61 BG6 sing 130 n n C6 H62 BG6 sing 131 n n O6 P BG6 sing 132 n n P O1P BG6 sing 133 n n P O2P BG6 sing 134 n n P O3P BG6 doub 135 n n O1P H1O1 BG6 sing 136 n n O2P H2O2 BG6 sing 137 n n # _pdbx_chem_comp_identifier.comp_id BG6 _pdbx_chem_comp_identifier.identifier b-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 9MED _atom_sites.fract_transf_matrix[1][1] 0.011511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 501 1 PO4 PO4 . F 3 AMP A 1 502 101 AMP AMP . G 4 PPV A 1 503 301 PPV PPV . H 2 PO4 A 1 504 407 PO4 PO4 . I 5 MG A 1 505 601 MG MG . J 3 AMP B 1 501 104 AMP AMP . K 6 BG6 B 1 502 202 BG6 BG6 . L 2 PO4 B 1 503 401 PO4 PO4 . M 2 PO4 B 1 504 403 PO4 PO4 . N 2 PO4 B 1 505 404 PO4 PO4 . O 7 CL C 1 501 1 CL CL . P 3 AMP C 1 502 103 AMP AMP . Q 6 BG6 C 1 503 201 BG6 BG6 . R 2 PO4 C 1 504 402 PO4 PO4 . S 2 PO4 C 1 505 405 PO4 PO4 . T 2 PO4 C 1 506 408 PO4 PO4 . U 3 AMP D 1 501 102 AMP AMP . V 2 PO4 D 1 502 406 PO4 PO4 . W 8 HOH A 1 601 16 HOH HOH . W 8 HOH A 2 602 8 HOH HOH . X 8 HOH B 1 601 2 HOH HOH . X 8 HOH B 2 602 15 HOH HOH . X 8 HOH B 3 603 3 HOH HOH . X 8 HOH B 4 604 7 HOH HOH . Y 8 HOH C 1 601 9 HOH HOH . Y 8 HOH C 2 602 4 HOH HOH . Y 8 HOH C 3 603 13 HOH HOH . Y 8 HOH C 4 604 17 HOH HOH . Y 8 HOH C 5 605 14 HOH HOH . Z 8 HOH D 1 601 12 HOH HOH . Z 8 HOH D 2 602 6 HOH HOH . Z 8 HOH D 3 603 5 HOH HOH . Z 8 HOH D 4 604 11 HOH HOH . Z 8 HOH D 5 605 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BG6 . . . K 6 58.815 15.542 -26.953 1 89.1 ? C1 BG6 502 B 1 HETATM 2 C C2 BG6 . . . K 6 57.386 15.575 -27.514 1 84.63 ? C2 BG6 502 B 1 HETATM 3 O O1 BG6 . . . K 6 59.644 15.241 -27.994 1 83.39 ? O1 BG6 502 B 1 HETATM 4 O O5 BG6 . . . K 6 59.127 14.57 -25.838 1 91.23 ? O5 BG6 502 B 1 HETATM 5 C C3 BG6 . . . K 6 56.366 14.966 -26.63 1 82.68 ? C3 BG6 502 B 1 HETATM 6 O O2 BG6 . . . K 6 57.034 16.95 -27.771 1 89.2 ? O2 BG6 502 B 1 HETATM 7 C C4 BG6 . . . K 6 56.899 13.661 -26.162 1 81.98 ? C4 BG6 502 B 1 HETATM 8 O O3 BG6 . . . K 6 55.123 14.75 -27.356 1 84.55 ? O3 BG6 502 B 1 HETATM 9 C C5 BG6 . . . K 6 57.971 13.992 -25.14 1 82.38 ? C5 BG6 502 B 1 HETATM 10 O O4 BG6 . . . K 6 55.889 12.845 -25.576 1 88.19 ? O4 BG6 502 B 1 HETATM 11 C C6 BG6 . . . K 6 58.375 12.726 -24.453 1 82.43 ? C6 BG6 502 B 1 HETATM 12 O O6 BG6 . . . K 6 57.97 12.752 -23.11 1 89.46 ? O6 BG6 502 B 1 HETATM 13 P P BG6 . . . K 6 59.042 12.185 -21.988 1 76.84 ? P BG6 502 B 1 HETATM 14 O O1P BG6 . . . K 6 59.848 11.063 -22.6 1 74.89 ? O1P BG6 502 B 1 HETATM 15 O O2P BG6 . . . K 6 58.306 11.677 -20.771 1 77.67 ? O2P BG6 502 B 1 HETATM 16 O O3P BG6 . . . K 6 59.962 13.307 -21.583 1 74.35 ? O3P BG6 502 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #