data_9MED
#
_model_server_result.job_id            CBcc67wROKguk0KwBE2HsA 
_model_server_result.datetime_utc      '2024-12-22 03:29:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9med 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":503}' 
#
_entry.id    9MED 
#
_exptl.entry_id    9MED 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MED 
_cell.length_a            86.875 
_cell.length_b            86.875 
_cell.length_c            475.979 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MED 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 Q N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            G 
_struct_conn.ptnr1_label_atom_id            O32 
_struct_conn.ptnr1_label_comp_id            PPV 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PPV 
_struct_conn.ptnr1_auth_seq_id              503 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            MG 
_struct_conn.ptnr2_label_comp_id            MG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MG 
_struct_conn.ptnr2_auth_seq_id              505 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.846 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                BG6 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BG6 sing 109 n n 
C1 O1 BG6 sing 110 n n 
C1 O5 BG6 sing 111 n n 
C1 H1 BG6 sing 112 n n 
C2 C3 BG6 sing 113 n n 
C2 O2 BG6 sing 114 n n 
C2 H2 BG6 sing 115 n n 
O1 HO1 BG6 sing 116 n n 
O5 C5 BG6 sing 117 n n 
C3 C4 BG6 sing 118 n n 
C3 O3 BG6 sing 119 n n 
C3 H3 BG6 sing 120 n n 
O2 HO2 BG6 sing 121 n n 
C4 C5 BG6 sing 122 n n 
C4 O4 BG6 sing 123 n n 
C4 H4 BG6 sing 124 n n 
O3 HO3 BG6 sing 125 n n 
C5 C6 BG6 sing 126 n n 
C5 H5 BG6 sing 127 n n 
O4 HO4 BG6 sing 128 n n 
C6 O6 BG6 sing 129 n n 
C6 H61 BG6 sing 130 n n 
C6 H62 BG6 sing 131 n n 
O6 P BG6 sing 132 n n 
P O1P BG6 sing 133 n n 
P O2P BG6 sing 134 n n 
P O3P BG6 doub 135 n n 
O1P H1O1 BG6 sing 136 n n 
O2P H2O2 BG6 sing 137 n n 
#
_pdbx_chem_comp_identifier.comp_id            BG6 
_pdbx_chem_comp_identifier.identifier         b-D-Glcp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     9MED 
_atom_sites.fract_transf_matrix[1][1]    0.011511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002101 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 501 1 PO4 PO4 . 
F 3 AMP A 1 502 101 AMP AMP . 
G 4 PPV A 1 503 301 PPV PPV . 
H 2 PO4 A 1 504 407 PO4 PO4 . 
I 5 MG A 1 505 601 MG MG . 
J 3 AMP B 1 501 104 AMP AMP . 
K 6 BG6 B 1 502 202 BG6 BG6 . 
L 2 PO4 B 1 503 401 PO4 PO4 . 
M 2 PO4 B 1 504 403 PO4 PO4 . 
N 2 PO4 B 1 505 404 PO4 PO4 . 
O 7 CL C 1 501 1 CL CL . 
P 3 AMP C 1 502 103 AMP AMP . 
Q 6 BG6 C 1 503 201 BG6 BG6 . 
R 2 PO4 C 1 504 402 PO4 PO4 . 
S 2 PO4 C 1 505 405 PO4 PO4 . 
T 2 PO4 C 1 506 408 PO4 PO4 . 
U 3 AMP D 1 501 102 AMP AMP . 
V 2 PO4 D 1 502 406 PO4 PO4 . 
W 8 HOH A 1 601 16 HOH HOH . 
W 8 HOH A 2 602 8 HOH HOH . 
X 8 HOH B 1 601 2 HOH HOH . 
X 8 HOH B 2 602 15 HOH HOH . 
X 8 HOH B 3 603 3 HOH HOH . 
X 8 HOH B 4 604 7 HOH HOH . 
Y 8 HOH C 1 601 9 HOH HOH . 
Y 8 HOH C 2 602 4 HOH HOH . 
Y 8 HOH C 3 603 13 HOH HOH . 
Y 8 HOH C 4 604 17 HOH HOH . 
Y 8 HOH C 5 605 14 HOH HOH . 
Z 8 HOH D 1 601 12 HOH HOH . 
Z 8 HOH D 2 602 6 HOH HOH . 
Z 8 HOH D 3 603 5 HOH HOH . 
Z 8 HOH D 4 604 11 HOH HOH . 
Z 8 HOH D 5 605 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BG6 . . . Q 6 37.044 3.01 -7.853 1 69.61 ? C1 BG6 503 C 1 
HETATM 2 C C2 BG6 . . . Q 6 38.067 1.985 -8.361 1 71.57 ? C2 BG6 503 C 1 
HETATM 3 O O1 BG6 . . . Q 6 35.848 2.362 -7.787 1 74.01 ? O1 BG6 503 C 1 
HETATM 4 O O5 BG6 . . . Q 6 36.835 4.267 -8.664 1 87.7 ? O5 BG6 503 C 1 
HETATM 5 C C3 BG6 . . . Q 6 39.034 2.478 -9.372 1 76.98 ? C3 BG6 503 C 1 
HETATM 6 O O2 BG6 . . . Q 6 38.797 1.484 -7.222 1 72.45 ? O2 BG6 503 C 1 
HETATM 7 C C4 BG6 . . . Q 6 38.329 3.384 -10.321 1 76.37 ? C4 BG6 503 C 1 
HETATM 8 O O3 BG6 . . . Q 6 39.607 1.343 -10.089 1 73.1 ? O3 BG6 503 C 1 
HETATM 9 C C5 BG6 . . . Q 6 37.977 4.618 -9.512 1 67.19 ? C5 BG6 503 C 1 
HETATM 10 O O4 BG6 . . . Q 6 39.14 3.735 -11.44 1 79.64 ? O4 BG6 503 C 1 
HETATM 11 C C6 BG6 . . . Q 6 37.638 5.756 -10.423 1 70.19 ? C6 BG6 503 C 1 
HETATM 12 O O6 BG6 . . . Q 6 38.577 6.781 -10.227 1 73.13 ? O6 BG6 503 C 1 
HETATM 13 P P BG6 . . . Q 6 38.024 8.28 -9.817 1 60.15 ? P BG6 503 C 1 
HETATM 14 O O1P BG6 . . . Q 6 36.649 8.475 -10.408 1 71.57 ? O1P BG6 503 C 1 
HETATM 15 O O2P BG6 . . . Q 6 38.965 9.332 -10.356 1 68.68 ? O2P BG6 503 C 1 
HETATM 16 O O3P BG6 . . . Q 6 37.945 8.404 -8.318 1 64 ? O3P BG6 503 C 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#