data_9MF6
#
_model_server_result.job_id            Hnauan4vAz8mmVf2t2XHAg 
_model_server_result.datetime_utc      '2025-01-10 08:22:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":502}' 
#
_entry.id    9MF6 
#
_exptl.entry_id    9MF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MF6 
_cell.length_a            86.96 
_cell.length_b            86.96 
_cell.length_c            473.874 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 122 A ASP 114 1_555 H MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 H MG MG . A MG 504 1_555 I OPP PPV . A PPV 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     9MF6 
_atom_sites.fract_transf_matrix[1][1]    0.0115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0115 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HSX A 1 501 505 HSX HSX . 
F 3 AMP A 1 502 507 AMP AMP . 
G 3 AMP A 1 503 509 AMP AMP . 
H 4 MG A 1 504 1 MG MG . 
I 5 PPV A 1 505 501 PPV PPV . 
J 2 HSX B 1 501 504 HSX HSX . 
K 3 AMP B 1 502 508 AMP AMP . 
L 3 AMP B 1 503 510 AMP AMP . 
M 2 HSX C 1 501 503 HSX HSX . 
N 2 HSX D 1 501 506 HSX HSX . 
O 6 HOH A 1 601 14 HOH HOH . 
O 6 HOH A 2 602 3 HOH HOH . 
O 6 HOH A 3 603 5 HOH HOH . 
O 6 HOH A 4 604 17 HOH HOH . 
O 6 HOH A 5 605 1 HOH HOH . 
P 6 HOH B 1 601 28 HOH HOH . 
P 6 HOH B 2 602 10 HOH HOH . 
P 6 HOH B 3 603 8 HOH HOH . 
P 6 HOH B 4 604 26 HOH HOH . 
P 6 HOH B 5 605 6 HOH HOH . 
P 6 HOH B 6 606 11 HOH HOH . 
P 6 HOH B 7 607 13 HOH HOH . 
P 6 HOH B 8 608 20 HOH HOH . 
P 6 HOH B 9 609 21 HOH HOH . 
P 6 HOH B 10 610 16 HOH HOH . 
Q 6 HOH C 1 601 19 HOH HOH . 
Q 6 HOH C 2 602 15 HOH HOH . 
Q 6 HOH C 3 603 7 HOH HOH . 
Q 6 HOH C 4 604 27 HOH HOH . 
Q 6 HOH C 5 605 9 HOH HOH . 
Q 6 HOH C 6 606 18 HOH HOH . 
Q 6 HOH C 7 607 4 HOH HOH . 
Q 6 HOH C 8 608 22 HOH HOH . 
Q 6 HOH C 9 609 23 HOH HOH . 
R 6 HOH D 1 601 12 HOH HOH . 
R 6 HOH D 2 602 25 HOH HOH . 
R 6 HOH D 3 603 2 HOH HOH . 
R 6 HOH D 4 604 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . K 3 64.906 24.843 -20.483 1 117.48 ? P AMP 502 B 1 
HETATM 2 O O1P AMP . . . K 3 66.25 24.623 -21.151 1 104.76 ? O1P AMP 502 B 1 
HETATM 3 O O2P AMP . . . K 3 64.474 26.284 -20.288 1 101.62 ? O2P AMP 502 B 1 
HETATM 4 O O3P AMP . . . K 3 64.785 24.034 -19.206 1 104.46 ? O3P AMP 502 B 1 
HETATM 5 O O5' AMP . . . K 3 63.837 24.193 -21.47 1 119.43 ? O5' AMP 502 B 1 
HETATM 6 C C5' AMP . . . K 3 62.462 24.558 -21.403 1 110.97 ? C5' AMP 502 B 1 
HETATM 7 C C4' AMP . . . K 3 61.561 23.375 -21.657 1 105.16 ? C4' AMP 502 B 1 
HETATM 8 O O4' AMP . . . K 3 61.877 22.802 -22.96 1 96.57 ? O4' AMP 502 B 1 
HETATM 9 C C3' AMP . . . K 3 61.716 22.232 -20.652 1 103.31 ? C3' AMP 502 B 1 
HETATM 10 O O3' AMP . . . K 3 60.459 21.578 -20.479 1 91.48 ? O3' AMP 502 B 1 
HETATM 11 C C2' AMP . . . K 3 62.682 21.297 -21.376 1 97.78 ? C2' AMP 502 B 1 
HETATM 12 O O2' AMP . . . K 3 62.669 19.963 -20.921 1 96.61 ? O2' AMP 502 B 1 
HETATM 13 C C1' AMP . . . K 3 62.162 21.422 -22.804 1 95.63 ? C1' AMP 502 B 1 
HETATM 14 N N9 AMP . . . K 3 63.108 21.022 -23.844 1 99.01 ? N9 AMP 502 B 1 
HETATM 15 C C8 AMP . . . K 3 64.474 21.127 -23.799 1 100.02 ? C8 AMP 502 B 1 
HETATM 16 N N7 AMP . . . K 3 65.066 20.685 -24.88 1 98.14 ? N7 AMP 502 B 1 
HETATM 17 C C5 AMP . . . K 3 64.025 20.257 -25.691 1 99.49 ? C5 AMP 502 B 1 
HETATM 18 C C6 AMP . . . K 3 64.004 19.683 -26.976 1 90.65 ? C6 AMP 502 B 1 
HETATM 19 N N6 AMP . . . K 3 65.098 19.439 -27.691 1 84.66 ? N6 AMP 502 B 1 
HETATM 20 N N1 AMP . . . K 3 62.795 19.374 -27.503 1 90.44 ? N1 AMP 502 B 1 
HETATM 21 C C2 AMP . . . K 3 61.698 19.625 -26.777 1 86.87 ? C2 AMP 502 B 1 
HETATM 22 N N3 AMP . . . K 3 61.598 20.158 -25.562 1 94.98 ? N3 AMP 502 B 1 
HETATM 23 C C4 AMP . . . K 3 62.81 20.458 -25.064 1 100.68 ? C4 AMP 502 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#