data_9MF6
#
_model_server_result.job_id            qVwh7nsenct3IV-0os6euQ 
_model_server_result.datetime_utc      '2025-01-10 08:10:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    9MF6 
#
_exptl.entry_id    9MF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MF6 
_cell.length_a            86.96 
_cell.length_b            86.96 
_cell.length_c            473.874 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 122 A ASP 114 1_555 H MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 H MG MG . A MG 504 1_555 I OPP PPV . A PPV 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     9MF6 
_atom_sites.fract_transf_matrix[1][1]    0.0115 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0115 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HSX A 1 501 505 HSX HSX . 
F 3 AMP A 1 502 507 AMP AMP . 
G 3 AMP A 1 503 509 AMP AMP . 
H 4 MG A 1 504 1 MG MG . 
I 5 PPV A 1 505 501 PPV PPV . 
J 2 HSX B 1 501 504 HSX HSX . 
K 3 AMP B 1 502 508 AMP AMP . 
L 3 AMP B 1 503 510 AMP AMP . 
M 2 HSX C 1 501 503 HSX HSX . 
N 2 HSX D 1 501 506 HSX HSX . 
O 6 HOH A 1 601 14 HOH HOH . 
O 6 HOH A 2 602 3 HOH HOH . 
O 6 HOH A 3 603 5 HOH HOH . 
O 6 HOH A 4 604 17 HOH HOH . 
O 6 HOH A 5 605 1 HOH HOH . 
P 6 HOH B 1 601 28 HOH HOH . 
P 6 HOH B 2 602 10 HOH HOH . 
P 6 HOH B 3 603 8 HOH HOH . 
P 6 HOH B 4 604 26 HOH HOH . 
P 6 HOH B 5 605 6 HOH HOH . 
P 6 HOH B 6 606 11 HOH HOH . 
P 6 HOH B 7 607 13 HOH HOH . 
P 6 HOH B 8 608 20 HOH HOH . 
P 6 HOH B 9 609 21 HOH HOH . 
P 6 HOH B 10 610 16 HOH HOH . 
Q 6 HOH C 1 601 19 HOH HOH . 
Q 6 HOH C 2 602 15 HOH HOH . 
Q 6 HOH C 3 603 7 HOH HOH . 
Q 6 HOH C 4 604 27 HOH HOH . 
Q 6 HOH C 5 605 9 HOH HOH . 
Q 6 HOH C 6 606 18 HOH HOH . 
Q 6 HOH C 7 607 4 HOH HOH . 
Q 6 HOH C 8 608 22 HOH HOH . 
Q 6 HOH C 9 609 23 HOH HOH . 
R 6 HOH D 1 601 12 HOH HOH . 
R 6 HOH D 2 602 25 HOH HOH . 
R 6 HOH D 3 603 2 HOH HOH . 
R 6 HOH D 4 604 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . G 3 43.682 -35.453 -48.006 1 117.07 ? P AMP 503 A 1 
HETATM 2 O O1P AMP . . . G 3 44.76 -35.089 -49.011 1 89.3 ? O1P AMP 503 A 1 
HETATM 3 O O2P AMP . . . G 3 44.106 -36.41 -46.91 1 106.38 ? O2P AMP 503 A 1 
HETATM 4 O O3P AMP . . . G 3 42.396 -35.894 -48.681 1 102.34 ? O3P AMP 503 A 1 
HETATM 5 O O5' AMP . . . G 3 43.311 -34.083 -47.279 1 106.62 ? O5' AMP 503 A 1 
HETATM 6 C C5' AMP . . . G 3 42.182 -33.99 -46.417 1 109.01 ? C5' AMP 503 A 1 
HETATM 7 C C4' AMP . . . G 3 42.038 -32.6 -45.845 1 104.08 ? C4' AMP 503 A 1 
HETATM 8 O O4' AMP . . . G 3 43.126 -32.363 -44.902 1 99.81 ? O4' AMP 503 A 1 
HETATM 9 C C3' AMP . . . G 3 42.126 -31.473 -46.873 1 101.58 ? C3' AMP 503 A 1 
HETATM 10 O O3' AMP . . . G 3 41.31 -30.379 -46.454 1 93.16 ? O3' AMP 503 A 1 
HETATM 11 C C2' AMP . . . G 3 43.6 -31.076 -46.791 1 100.87 ? C2' AMP 503 A 1 
HETATM 12 O O2' AMP . . . G 3 43.888 -29.78 -47.267 1 100.29 ? O2' AMP 503 A 1 
HETATM 13 C C1' AMP . . . G 3 43.839 -31.199 -45.29 1 99.95 ? C1' AMP 503 A 1 
HETATM 14 N N9 AMP . . . G 3 45.239 -31.366 -44.892 1 96.24 ? N9 AMP 503 A 1 
HETATM 15 C C8 AMP . . . G 3 46.219 -32.03 -45.585 1 93.39 ? C8 AMP 503 A 1 
HETATM 16 N N7 AMP . . . G 3 47.382 -32.018 -44.983 1 87.61 ? N7 AMP 503 A 1 
HETATM 17 C C5 AMP . . . G 3 47.161 -31.297 -43.818 1 90.16 ? C5 AMP 503 A 1 
HETATM 18 C C6 AMP . . . G 3 48.009 -30.934 -42.754 1 84.69 ? C6 AMP 503 A 1 
HETATM 19 N N6 AMP . . . G 3 49.298 -31.261 -42.691 1 70.99 ? N6 AMP 503 A 1 
HETATM 20 N N1 AMP . . . G 3 47.471 -30.209 -41.745 1 85.84 ? N1 AMP 503 A 1 
HETATM 21 C C2 AMP . . . G 3 46.173 -29.885 -41.814 1 83.27 ? C2 AMP 503 A 1 
HETATM 22 N N3 AMP . . . G 3 45.283 -30.171 -42.76 1 92.39 ? N3 AMP 503 A 1 
HETATM 23 C C4 AMP . . . G 3 45.842 -30.889 -43.75 1 95.55 ? C4 AMP 503 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#