data_9MG4 # _model_server_result.job_id u7xaKEVn-7HtFH15NC-PvQ _model_server_result.datetime_utc '2025-07-09 18:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 9MG4 # _exptl.entry_id 9MG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MG4 _cell.length_a 95.16 _cell.length_b 95.16 _cell.length_c 248.942 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 9MG4 _atom_sites.fract_transf_matrix[1][1] 0.010509 _atom_sites.fract_transf_matrix[1][2] 0.006067 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 501 SAH SAH . C 3 EDO A 1 502 502 EDO EDO . D 3 EDO A 1 503 503 EDO EDO . E 3 EDO A 1 504 504 EDO EDO . F 4 ACT A 1 505 505 ACT ACT . G 5 HOH A 1 601 273 HOH HOH . G 5 HOH A 2 602 123 HOH HOH . G 5 HOH A 3 603 308 HOH HOH . G 5 HOH A 4 604 228 HOH HOH . G 5 HOH A 5 605 285 HOH HOH . G 5 HOH A 6 606 26 HOH HOH . G 5 HOH A 7 607 216 HOH HOH . G 5 HOH A 8 608 234 HOH HOH . G 5 HOH A 9 609 42 HOH HOH . G 5 HOH A 10 610 111 HOH HOH . G 5 HOH A 11 611 75 HOH HOH . G 5 HOH A 12 612 125 HOH HOH . G 5 HOH A 13 613 175 HOH HOH . G 5 HOH A 14 614 259 HOH HOH . G 5 HOH A 15 615 149 HOH HOH . G 5 HOH A 16 616 307 HOH HOH . G 5 HOH A 17 617 269 HOH HOH . G 5 HOH A 18 618 58 HOH HOH . G 5 HOH A 19 619 68 HOH HOH . G 5 HOH A 20 620 288 HOH HOH . G 5 HOH A 21 621 130 HOH HOH . G 5 HOH A 22 622 52 HOH HOH . G 5 HOH A 23 623 17 HOH HOH . G 5 HOH A 24 624 24 HOH HOH . G 5 HOH A 25 625 239 HOH HOH . G 5 HOH A 26 626 86 HOH HOH . G 5 HOH A 27 627 136 HOH HOH . G 5 HOH A 28 628 83 HOH HOH . G 5 HOH A 29 629 119 HOH HOH . G 5 HOH A 30 630 187 HOH HOH . G 5 HOH A 31 631 171 HOH HOH . G 5 HOH A 32 632 129 HOH HOH . G 5 HOH A 33 633 176 HOH HOH . G 5 HOH A 34 634 220 HOH HOH . G 5 HOH A 35 635 204 HOH HOH . G 5 HOH A 36 636 90 HOH HOH . G 5 HOH A 37 637 266 HOH HOH . G 5 HOH A 38 638 261 HOH HOH . G 5 HOH A 39 639 70 HOH HOH . G 5 HOH A 40 640 142 HOH HOH . G 5 HOH A 41 641 218 HOH HOH . G 5 HOH A 42 642 157 HOH HOH . G 5 HOH A 43 643 170 HOH HOH . G 5 HOH A 44 644 306 HOH HOH . G 5 HOH A 45 645 9 HOH HOH . G 5 HOH A 46 646 127 HOH HOH . G 5 HOH A 47 647 66 HOH HOH . G 5 HOH A 48 648 96 HOH HOH . G 5 HOH A 49 649 164 HOH HOH . G 5 HOH A 50 650 133 HOH HOH . G 5 HOH A 51 651 51 HOH HOH . G 5 HOH A 52 652 159 HOH HOH . G 5 HOH A 53 653 33 HOH HOH . G 5 HOH A 54 654 63 HOH HOH . G 5 HOH A 55 655 213 HOH HOH . G 5 HOH A 56 656 211 HOH HOH . G 5 HOH A 57 657 54 HOH HOH . G 5 HOH A 58 658 244 HOH HOH . G 5 HOH A 59 659 297 HOH HOH . G 5 HOH A 60 660 276 HOH HOH . G 5 HOH A 61 661 34 HOH HOH . G 5 HOH A 62 662 209 HOH HOH . G 5 HOH A 63 663 49 HOH HOH . G 5 HOH A 64 664 84 HOH HOH . G 5 HOH A 65 665 212 HOH HOH . G 5 HOH A 66 666 16 HOH HOH . G 5 HOH A 67 667 97 HOH HOH . G 5 HOH A 68 668 27 HOH HOH . G 5 HOH A 69 669 235 HOH HOH . G 5 HOH A 70 670 173 HOH HOH . G 5 HOH A 71 671 18 HOH HOH . G 5 HOH A 72 672 238 HOH HOH . G 5 HOH A 73 673 194 HOH HOH . G 5 HOH A 74 674 201 HOH HOH . G 5 HOH A 75 675 186 HOH HOH . G 5 HOH A 76 676 253 HOH HOH . G 5 HOH A 77 677 14 HOH HOH . G 5 HOH A 78 678 122 HOH HOH . G 5 HOH A 79 679 202 HOH HOH . G 5 HOH A 80 680 37 HOH HOH . G 5 HOH A 81 681 312 HOH HOH . G 5 HOH A 82 682 146 HOH HOH . G 5 HOH A 83 683 56 HOH HOH . G 5 HOH A 84 684 309 HOH HOH . G 5 HOH A 85 685 292 HOH HOH . G 5 HOH A 86 686 255 HOH HOH . G 5 HOH A 87 687 59 HOH HOH . G 5 HOH A 88 688 195 HOH HOH . G 5 HOH A 89 689 163 HOH HOH . G 5 HOH A 90 690 19 HOH HOH . G 5 HOH A 91 691 41 HOH HOH . G 5 HOH A 92 692 55 HOH HOH . G 5 HOH A 93 693 81 HOH HOH . G 5 HOH A 94 694 206 HOH HOH . G 5 HOH A 95 695 46 HOH HOH . G 5 HOH A 96 696 48 HOH HOH . G 5 HOH A 97 697 295 HOH HOH . G 5 HOH A 98 698 192 HOH HOH . G 5 HOH A 99 699 242 HOH HOH . G 5 HOH A 100 700 6 HOH HOH . G 5 HOH A 101 701 141 HOH HOH . G 5 HOH A 102 702 76 HOH HOH . G 5 HOH A 103 703 303 HOH HOH . G 5 HOH A 104 704 8 HOH HOH . G 5 HOH A 105 705 147 HOH HOH . G 5 HOH A 106 706 305 HOH HOH . G 5 HOH A 107 707 2 HOH HOH . G 5 HOH A 108 708 85 HOH HOH . G 5 HOH A 109 709 124 HOH HOH . G 5 HOH A 110 710 110 HOH HOH . G 5 HOH A 111 711 22 HOH HOH . G 5 HOH A 112 712 71 HOH HOH . G 5 HOH A 113 713 60 HOH HOH . G 5 HOH A 114 714 78 HOH HOH . G 5 HOH A 115 715 108 HOH HOH . G 5 HOH A 116 716 87 HOH HOH . G 5 HOH A 117 717 279 HOH HOH . G 5 HOH A 118 718 167 HOH HOH . G 5 HOH A 119 719 233 HOH HOH . G 5 HOH A 120 720 50 HOH HOH . G 5 HOH A 121 721 183 HOH HOH . G 5 HOH A 122 722 158 HOH HOH . G 5 HOH A 123 723 132 HOH HOH . G 5 HOH A 124 724 23 HOH HOH . G 5 HOH A 125 725 264 HOH HOH . G 5 HOH A 126 726 184 HOH HOH . G 5 HOH A 127 727 258 HOH HOH . G 5 HOH A 128 728 57 HOH HOH . G 5 HOH A 129 729 161 HOH HOH . G 5 HOH A 130 730 199 HOH HOH . G 5 HOH A 131 731 62 HOH HOH . G 5 HOH A 132 732 254 HOH HOH . G 5 HOH A 133 733 144 HOH HOH . G 5 HOH A 134 734 155 HOH HOH . G 5 HOH A 135 735 72 HOH HOH . G 5 HOH A 136 736 270 HOH HOH . G 5 HOH A 137 737 101 HOH HOH . G 5 HOH A 138 738 32 HOH HOH . G 5 HOH A 139 739 219 HOH HOH . G 5 HOH A 140 740 92 HOH HOH . G 5 HOH A 141 741 116 HOH HOH . G 5 HOH A 142 742 39 HOH HOH . G 5 HOH A 143 743 181 HOH HOH . G 5 HOH A 144 744 265 HOH HOH . G 5 HOH A 145 745 191 HOH HOH . G 5 HOH A 146 746 140 HOH HOH . G 5 HOH A 147 747 278 HOH HOH . G 5 HOH A 148 748 77 HOH HOH . G 5 HOH A 149 749 89 HOH HOH . G 5 HOH A 150 750 64 HOH HOH . G 5 HOH A 151 751 44 HOH HOH . G 5 HOH A 152 752 179 HOH HOH . G 5 HOH A 153 753 21 HOH HOH . G 5 HOH A 154 754 237 HOH HOH . G 5 HOH A 155 755 65 HOH HOH . G 5 HOH A 156 756 102 HOH HOH . G 5 HOH A 157 757 35 HOH HOH . G 5 HOH A 158 758 5 HOH HOH . G 5 HOH A 159 759 172 HOH HOH . G 5 HOH A 160 760 36 HOH HOH . G 5 HOH A 161 761 73 HOH HOH . G 5 HOH A 162 762 205 HOH HOH . G 5 HOH A 163 763 69 HOH HOH . G 5 HOH A 164 764 150 HOH HOH . G 5 HOH A 165 765 29 HOH HOH . G 5 HOH A 166 766 7 HOH HOH . G 5 HOH A 167 767 11 HOH HOH . G 5 HOH A 168 768 114 HOH HOH . G 5 HOH A 169 769 80 HOH HOH . G 5 HOH A 170 770 302 HOH HOH . G 5 HOH A 171 771 38 HOH HOH . G 5 HOH A 172 772 82 HOH HOH . G 5 HOH A 173 773 13 HOH HOH . G 5 HOH A 174 774 229 HOH HOH . G 5 HOH A 175 775 180 HOH HOH . G 5 HOH A 176 776 74 HOH HOH . G 5 HOH A 177 777 299 HOH HOH . G 5 HOH A 178 778 47 HOH HOH . G 5 HOH A 179 779 138 HOH HOH . G 5 HOH A 180 780 100 HOH HOH . G 5 HOH A 181 781 118 HOH HOH . G 5 HOH A 182 782 283 HOH HOH . G 5 HOH A 183 783 88 HOH HOH . G 5 HOH A 184 784 148 HOH HOH . G 5 HOH A 185 785 143 HOH HOH . G 5 HOH A 186 786 294 HOH HOH . G 5 HOH A 187 787 105 HOH HOH . G 5 HOH A 188 788 263 HOH HOH . G 5 HOH A 189 789 221 HOH HOH . G 5 HOH A 190 790 224 HOH HOH . G 5 HOH A 191 791 98 HOH HOH . G 5 HOH A 192 792 152 HOH HOH . G 5 HOH A 193 793 177 HOH HOH . G 5 HOH A 194 794 137 HOH HOH . G 5 HOH A 195 795 117 HOH HOH . G 5 HOH A 196 796 12 HOH HOH . G 5 HOH A 197 797 91 HOH HOH . G 5 HOH A 198 798 226 HOH HOH . G 5 HOH A 199 799 107 HOH HOH . G 5 HOH A 200 800 243 HOH HOH . G 5 HOH A 201 801 28 HOH HOH . G 5 HOH A 202 802 61 HOH HOH . G 5 HOH A 203 803 196 HOH HOH . G 5 HOH A 204 804 222 HOH HOH . G 5 HOH A 205 805 20 HOH HOH . G 5 HOH A 206 806 272 HOH HOH . G 5 HOH A 207 807 301 HOH HOH . G 5 HOH A 208 808 293 HOH HOH . G 5 HOH A 209 809 257 HOH HOH . G 5 HOH A 210 810 99 HOH HOH . G 5 HOH A 211 811 260 HOH HOH . G 5 HOH A 212 812 275 HOH HOH . G 5 HOH A 213 813 112 HOH HOH . G 5 HOH A 214 814 256 HOH HOH . G 5 HOH A 215 815 4 HOH HOH . G 5 HOH A 216 816 134 HOH HOH . G 5 HOH A 217 817 30 HOH HOH . G 5 HOH A 218 818 95 HOH HOH . G 5 HOH A 219 819 188 HOH HOH . G 5 HOH A 220 820 271 HOH HOH . G 5 HOH A 221 821 139 HOH HOH . G 5 HOH A 222 822 106 HOH HOH . G 5 HOH A 223 823 210 HOH HOH . G 5 HOH A 224 824 207 HOH HOH . G 5 HOH A 225 825 231 HOH HOH . G 5 HOH A 226 826 3 HOH HOH . G 5 HOH A 227 827 190 HOH HOH . G 5 HOH A 228 828 166 HOH HOH . G 5 HOH A 229 829 165 HOH HOH . G 5 HOH A 230 830 282 HOH HOH . G 5 HOH A 231 831 174 HOH HOH . G 5 HOH A 232 832 115 HOH HOH . G 5 HOH A 233 833 1 HOH HOH . G 5 HOH A 234 834 236 HOH HOH . G 5 HOH A 235 835 109 HOH HOH . G 5 HOH A 236 836 10 HOH HOH . G 5 HOH A 237 837 103 HOH HOH . G 5 HOH A 238 838 53 HOH HOH . G 5 HOH A 239 839 15 HOH HOH . G 5 HOH A 240 840 25 HOH HOH . G 5 HOH A 241 841 67 HOH HOH . G 5 HOH A 242 842 232 HOH HOH . G 5 HOH A 243 843 245 HOH HOH . G 5 HOH A 244 844 145 HOH HOH . G 5 HOH A 245 845 151 HOH HOH . G 5 HOH A 246 846 154 HOH HOH . G 5 HOH A 247 847 104 HOH HOH . G 5 HOH A 248 848 203 HOH HOH . G 5 HOH A 249 849 43 HOH HOH . G 5 HOH A 250 850 193 HOH HOH . G 5 HOH A 251 851 182 HOH HOH . G 5 HOH A 252 852 240 HOH HOH . G 5 HOH A 253 853 31 HOH HOH . G 5 HOH A 254 854 94 HOH HOH . G 5 HOH A 255 855 230 HOH HOH . G 5 HOH A 256 856 185 HOH HOH . G 5 HOH A 257 857 126 HOH HOH . G 5 HOH A 258 858 168 HOH HOH . G 5 HOH A 259 859 200 HOH HOH . G 5 HOH A 260 860 121 HOH HOH . G 5 HOH A 261 861 153 HOH HOH . G 5 HOH A 262 862 156 HOH HOH . G 5 HOH A 263 863 40 HOH HOH . G 5 HOH A 264 864 197 HOH HOH . G 5 HOH A 265 865 217 HOH HOH . G 5 HOH A 266 866 169 HOH HOH . G 5 HOH A 267 867 162 HOH HOH . G 5 HOH A 268 868 287 HOH HOH . G 5 HOH A 269 869 241 HOH HOH . G 5 HOH A 270 870 262 HOH HOH . G 5 HOH A 271 871 277 HOH HOH . G 5 HOH A 272 872 178 HOH HOH . G 5 HOH A 273 873 246 HOH HOH . G 5 HOH A 274 874 198 HOH HOH . G 5 HOH A 275 875 189 HOH HOH . G 5 HOH A 276 876 268 HOH HOH . G 5 HOH A 277 877 286 HOH HOH . G 5 HOH A 278 878 225 HOH HOH . G 5 HOH A 279 879 131 HOH HOH . G 5 HOH A 280 880 214 HOH HOH . G 5 HOH A 281 881 300 HOH HOH . G 5 HOH A 282 882 223 HOH HOH . G 5 HOH A 283 883 304 HOH HOH . G 5 HOH A 284 884 128 HOH HOH . G 5 HOH A 285 885 247 HOH HOH . G 5 HOH A 286 886 135 HOH HOH . G 5 HOH A 287 887 215 HOH HOH . G 5 HOH A 288 888 249 HOH HOH . G 5 HOH A 289 889 160 HOH HOH . G 5 HOH A 290 890 313 HOH HOH . G 5 HOH A 291 891 298 HOH HOH . G 5 HOH A 292 892 291 HOH HOH . G 5 HOH A 293 893 290 HOH HOH . G 5 HOH A 294 894 281 HOH HOH . G 5 HOH A 295 895 248 HOH HOH . G 5 HOH A 296 896 284 HOH HOH . G 5 HOH A 297 897 296 HOH HOH . G 5 HOH A 298 898 310 HOH HOH . G 5 HOH A 299 899 113 HOH HOH . G 5 HOH A 300 900 93 HOH HOH . G 5 HOH A 301 901 252 HOH HOH . G 5 HOH A 302 902 274 HOH HOH . G 5 HOH A 303 903 45 HOH HOH . G 5 HOH A 304 904 267 HOH HOH . G 5 HOH A 305 905 208 HOH HOH . G 5 HOH A 306 906 311 HOH HOH . G 5 HOH A 307 907 289 HOH HOH . G 5 HOH A 308 908 227 HOH HOH . G 5 HOH A 309 909 120 HOH HOH . G 5 HOH A 310 910 79 HOH HOH . G 5 HOH A 311 911 251 HOH HOH . G 5 HOH A 312 912 250 HOH HOH . G 5 HOH A 313 913 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 20.014 -11.773 1.624 1 26.48 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 3 20.185 -12.9 2.471 1 40.97 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 3 19.898 -12.204 0.183 1 23.9 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 3 19.482 -13.551 0.141 1 35.61 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #