data_9MGB # _model_server_result.job_id 22i7k0swZrmUzKBTyJ1X6w _model_server_result.datetime_utc '2025-09-09 17:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":201}' # _entry.id 9MGB # _exptl.entry_id 9MGB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.694 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOERYTHROBILIN _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MGB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 S N N ? 4 T N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N ? 4 PA N N ? 4 QA N N ? 4 RA N N ? 4 SA N N ? 4 UA N N ? 4 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 26 a CYS 26 1_555 M SG CYS 100 a CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 M SG CYS 167 a CYS 167 1_555 M SG CYS 232 a CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 N SG CYS 26 c CYS 26 1_555 N SG CYS 100 c CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 N SG CYS 167 c CYS 167 1_555 N SG CYS 232 c CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 O SG CYS 26 e CYS 26 1_555 O SG CYS 100 e CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 O SG CYS 167 e CYS 167 1_555 O SG CYS 232 e CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 P SG CYS 26 g CYS 26 1_555 P SG CYS 100 g CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 P SG CYS 167 g CYS 167 1_555 P SG CYS 232 g CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 Q SG CYS 26 i CYS 26 1_555 Q SG CYS 100 i CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 Q SG CYS 167 i CYS 167 1_555 Q SG CYS 232 i CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 R SG CYS 26 k CYS 26 1_555 R SG CYS 100 k CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 R SG CYS 167 k CYS 167 1_555 R SG CYS 232 k CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 B SG CYS 158 B CYS 158 1_555 W CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale2 C SG CYS 139 C CYS 139 1_555 Y CAA PEB . C PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? covale ? covale3 D SG CYS 158 D CYS 158 1_555 BA CAA PEB . D PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale4 E SG CYS 139 F CYS 139 1_555 DA CAA PEB . F PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale5 F SG CYS 158 G CYS 158 1_555 GA CAA PEB . G PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale6 G SG CYS 139 I CYS 139 1_555 IA CAA PEB . I PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale7 H SG CYS 158 J CYS 158 1_555 LA CAA PEB . J PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale8 J SG CYS 158 M CYS 158 1_555 QA CAA PEB . M PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale9 K SG CYS 139 O CYS 139 1_555 SA CAA PEB . O PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? covale ? covale10 L SG CYS 158 Q CYS 158 1_555 VA CAA PEB . Q PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id PEB _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOERYTHROBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHC C4C PEB sing 235 n n CHC C1D PEB sing 236 n n CHC HHC1 PEB sing 237 n n CHC HHC2 PEB sing 238 n n NC C1C PEB sing 239 n y NC C4C PEB sing 240 n y NC HNC PEB sing 241 n n C1C C2C PEB doub 242 n y C1C CHB PEB sing 243 n n C2C C3C PEB sing 244 n y C2C CAC PEB sing 245 n n C3C C4C PEB doub 246 n y C3C CMC PEB sing 247 n n CMC HMC1 PEB sing 248 n n CMC HMC2 PEB sing 249 n n CMC HMC3 PEB sing 250 n n CAC CBC PEB sing 251 n n CAC HAC1 PEB sing 252 n n CAC HAC2 PEB sing 253 n n CBC CGC PEB sing 254 n n CBC HBC1 PEB sing 255 n n CBC HBC2 PEB sing 256 n n CGC O1C PEB doub 257 n n CGC O2C PEB sing 258 n n O2C HOC2 PEB sing 259 n n ND C1D PEB sing 260 n n ND C4D PEB sing 261 n n ND HND PEB sing 262 n n C1D C2D PEB sing 263 n n C1D H1D1 PEB sing 264 n n C2D C3D PEB doub 265 n n C2D CMD PEB sing 266 n n C3D C4D PEB sing 267 n n C3D CAD PEB sing 268 n n C4D OD PEB doub 269 n n CMD HMD1 PEB sing 270 n n CMD HMD2 PEB sing 271 n n CMD HMD3 PEB sing 272 n n CAD CBD PEB doub 273 n n CAD HAD1 PEB sing 274 n n CBD HBD1 PEB sing 275 n n CBD HBD2 PEB sing 276 n n NA C1A PEB sing 277 n n NA C4A PEB sing 278 n n NA HNA PEB sing 279 n n C1A C2A PEB sing 280 n n C1A OA PEB doub 281 n n C2A C3A PEB sing 282 n n C2A CMA PEB sing 283 n n C2A H2A1 PEB sing 284 n n C3A C4A PEB sing 285 n n C3A CAA PEB sing 286 n n C3A H3A1 PEB sing 287 n n C4A CHA PEB doub 288 z n CMA HMA1 PEB sing 289 n n CMA HMA2 PEB sing 290 n n CMA HMA3 PEB sing 291 n n CBA CAA PEB sing 292 n n CBA HBA1 PEB sing 293 n n CBA HBA2 PEB sing 294 n n CBA HBA3 PEB sing 295 n n CHA C1B PEB sing 296 n n CHA HHA1 PEB sing 297 n n CAA HAA1 PEB sing 298 n n CAA HAA2 PEB sing 299 n n NB C1B PEB doub 300 n n NB C4B PEB sing 301 n n C1B C2B PEB sing 302 n n C2B C3B PEB doub 303 n n C2B CMB PEB sing 304 n n C3B C4B PEB sing 305 n n C3B CAB PEB sing 306 n n C4B CHB PEB doub 307 z n CHB HHB1 PEB sing 308 n n CMB HMB1 PEB sing 309 n n CMB HMB2 PEB sing 310 n n CMB HMB3 PEB sing 311 n n CAB CBB PEB sing 312 n n CAB HAB1 PEB sing 313 n n CAB HAB2 PEB sing 314 n n CBB CGB PEB sing 315 n n CBB HBB1 PEB sing 316 n n CBB HBB2 PEB sing 317 n n CGB O1B PEB doub 318 n n CGB O2B PEB sing 319 n n O2B HOB2 PEB sing 320 n n # _atom_sites.entry_id 9MGB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 PEB A 1 201 2 PEB PEB . T 4 PEB A 1 202 3 PEB PEB . U 5 PUB B 1 201 1 PUB PUB . V 4 PEB B 1 202 4 PEB PEB . W 4 PEB B 1 203 5 PEB PEB . X 4 PEB C 1 201 2 PEB PEB . Y 4 PEB C 1 202 3 PEB PEB . Z 5 PUB D 1 201 1 PUB PUB . AA 4 PEB D 1 202 4 PEB PEB . BA 4 PEB D 1 203 5 PEB PEB . CA 4 PEB F 1 201 2 PEB PEB . DA 4 PEB F 1 202 3 PEB PEB . EA 5 PUB G 1 201 1 PUB PUB . FA 4 PEB G 1 202 4 PEB PEB . GA 4 PEB G 1 203 5 PEB PEB . HA 4 PEB I 1 201 2 PEB PEB . IA 4 PEB I 1 202 3 PEB PEB . JA 5 PUB J 1 201 1 PUB PUB . KA 4 PEB J 1 202 4 PEB PEB . LA 4 PEB J 1 203 5 PEB PEB . MA 4 PEB L 1 201 2 PEB PEB . NA 4 PEB L 1 202 3 PEB PEB . OA 5 PUB M 1 201 1 PUB PUB . PA 4 PEB M 1 202 4 PEB PEB . QA 4 PEB M 1 203 5 PEB PEB . RA 4 PEB O 1 201 2 PEB PEB . SA 4 PEB O 1 202 3 PEB PEB . TA 5 PUB Q 1 201 1 PUB PUB . UA 4 PEB Q 1 202 4 PEB PEB . VA 4 PEB Q 1 203 5 PEB PEB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHC PEB . . . S 4 195.55 191.836 157.224 1 10.61 ? CHC PEB 201 A 1 HETATM 2 N NC PEB . . . S 4 197.816 191.015 156.553 1 12.86 ? NC PEB 201 A 1 HETATM 3 C C1C PEB . . . S 4 198.4 190.035 155.787 1 12.86 ? C1C PEB 201 A 1 HETATM 4 C C2C PEB . . . S 4 197.334 189.278 155.246 1 14.09 ? C2C PEB 201 A 1 HETATM 5 C C3C PEB . . . S 4 196.14 189.842 155.703 1 13.15 ? C3C PEB 201 A 1 HETATM 6 C C4C PEB . . . S 4 196.467 190.914 156.501 1 12.92 ? C4C PEB 201 A 1 HETATM 7 C CMC PEB . . . S 4 194.762 189.357 155.363 1 12.01 ? CMC PEB 201 A 1 HETATM 8 C CAC PEB . . . S 4 197.491 188.093 154.342 1 14.06 ? CAC PEB 201 A 1 HETATM 9 C CBC PEB . . . S 4 197.242 188.443 152.883 1 14.85 ? CBC PEB 201 A 1 HETATM 10 C CGC PEB . . . S 4 198.451 189.048 152.199 1 17.05 ? CGC PEB 201 A 1 HETATM 11 O O1C PEB . . . S 4 199.329 188.273 151.777 1 24.12 ? O1C PEB 201 A 1 HETATM 12 O O2C PEB . . . S 4 198.517 190.289 152.102 1 20.4 ? O2C PEB 201 A 1 HETATM 13 N ND PEB . . . S 4 195.393 192.845 155.008 1 12.83 ? ND PEB 201 A 1 HETATM 14 C C1D PEB . . . S 4 195.211 193.1 156.424 1 12.68 ? C1D PEB 201 A 1 HETATM 15 C C2D PEB . . . S 4 193.737 193.425 156.458 1 12.8 ? C2D PEB 201 A 1 HETATM 16 C C3D PEB . . . S 4 193.175 193.083 155.281 1 12.58 ? C3D PEB 201 A 1 HETATM 17 C C4D PEB . . . S 4 194.22 192.735 154.351 1 13.32 ? C4D PEB 201 A 1 HETATM 18 C CMD PEB . . . S 4 193.085 194.051 157.651 1 11.04 ? CMD PEB 201 A 1 HETATM 19 C CAD PEB . . . S 4 191.745 193.08 154.98 1 12.67 ? CAD PEB 201 A 1 HETATM 20 C CBD PEB . . . S 4 191.116 194.002 154.305 1 13.26 ? CBD PEB 201 A 1 HETATM 21 O OD PEB . . . S 4 194.081 192.415 153.162 1 18.88 ? OD PEB 201 A 1 HETATM 22 N NA PEB . . . S 4 204.413 193.29 158.886 1 14.73 ? NA PEB 201 A 1 HETATM 23 C C1A PEB . . . S 4 204.901 194.027 159.929 1 17.83 ? C1A PEB 201 A 1 HETATM 24 C C2A PEB . . . S 4 203.829 194.079 160.986 1 14.88 ? C2A PEB 201 A 1 HETATM 25 C C3A PEB . . . S 4 202.549 193.883 160.161 1 16.81 ? C3A PEB 201 A 1 HETATM 26 C C4A PEB . . . S 4 203.041 193.481 158.793 1 14 ? C4A PEB 201 A 1 HETATM 27 C CMA PEB . . . S 4 204.025 193.099 162.128 1 16.49 ? CMA PEB 201 A 1 HETATM 28 C CBA PEB . . . S 4 201.787 195.901 161.498 1 15.45 ? CBA PEB 201 A 1 HETATM 29 O OA PEB . . . S 4 205.994 194.557 159.986 1 17.47 ? OA PEB 201 A 1 HETATM 30 C CHA PEB . . . S 4 202.284 193.394 157.618 1 13.43 ? CHA PEB 201 A 1 HETATM 31 C CAA PEB . . . S 4 201.689 195.144 160.188 1 13.82 ? CAA PEB 201 A 1 HETATM 32 N NB PEB . . . S 4 200.724 191.763 156.759 1 13.85 ? NB PEB 201 A 1 HETATM 33 C C1B PEB . . . S 4 201.991 192.239 156.939 1 13.84 ? C1B PEB 201 A 1 HETATM 34 C C2B PEB . . . S 4 202.944 191.378 156.249 1 16.96 ? C2B PEB 201 A 1 HETATM 35 C C3B PEB . . . S 4 202.222 190.422 155.607 1 18.09 ? C3B PEB 201 A 1 HETATM 36 C C4B PEB . . . S 4 200.834 190.649 155.976 1 16.1 ? C4B PEB 201 A 1 HETATM 37 C CHB PEB . . . S 4 199.767 189.838 155.6 1 15.89 ? CHB PEB 201 A 1 HETATM 38 C CMB PEB . . . S 4 204.437 191.523 156.234 1 16.56 ? CMB PEB 201 A 1 HETATM 39 C CAB PEB . . . S 4 202.714 189.337 154.694 1 19.35 ? CAB PEB 201 A 1 HETATM 40 C CBB PEB . . . S 4 203.064 188.035 155.42 1 22.66 ? CBB PEB 201 A 1 HETATM 41 C CGB PEB . . . S 4 204.485 187.994 155.954 1 28.63 ? CGB PEB 201 A 1 HETATM 42 O O1B PEB . . . S 4 204.651 187.994 157.188 1 33.58 ? O1B PEB 201 A 1 HETATM 43 O O2B PEB . . . S 4 205.42 187.971 155.131 1 31.04 ? O2B PEB 201 A 1 # _model_server_stats.io_time_ms 174 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #