data_9MGB
#
_model_server_result.job_id            USCuZdpWvGIfISFykknZUw 
_model_server_result.datetime_utc      '2025-09-08 11:11:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mgb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":202}' 
#
_entry.id    9MGB 
#
_exptl.entry_id    9MGB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOERYTHROBILIN 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MGB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MGB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 S N N 
? 4 T N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 FA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
? 4 PA N N 
? 4 QA N N 
? 4 RA N N 
? 4 SA N N 
? 4 UA N N 
? 4 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 M SG CYS 26 a CYS 26 1_555 M SG CYS 100 a CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 M SG CYS 167 a CYS 167 1_555 M SG CYS 232 a CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 N SG CYS 26 c CYS 26 1_555 N SG CYS 100 c CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 N SG CYS 167 c CYS 167 1_555 N SG CYS 232 c CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 O SG CYS 26 e CYS 26 1_555 O SG CYS 100 e CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 O SG CYS 167 e CYS 167 1_555 O SG CYS 232 e CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 P SG CYS 26 g CYS 26 1_555 P SG CYS 100 g CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 P SG CYS 167 g CYS 167 1_555 P SG CYS 232 g CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 Q SG CYS 26 i CYS 26 1_555 Q SG CYS 100 i CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 Q SG CYS 167 i CYS 167 1_555 Q SG CYS 232 i CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 R SG CYS 26 k CYS 26 1_555 R SG CYS 100 k CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 R SG CYS 167 k CYS 167 1_555 R SG CYS 232 k CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B SG CYS 158 B CYS 158 1_555 W CAA PEB . B PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale2 C SG CYS 139 C CYS 139 1_555 Y CAA PEB . C PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale3 D SG CYS 158 D CYS 158 1_555 BA CAA PEB . D PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale4 E SG CYS 139 F CYS 139 1_555 DA CAA PEB . F PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
covale ? covale5 F SG CYS 158 G CYS 158 1_555 GA CAA PEB . G PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale6 G SG CYS 139 I CYS 139 1_555 IA CAA PEB . I PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
covale ? covale7 H SG CYS 158 J CYS 158 1_555 LA CAA PEB . J PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale8 J SG CYS 158 M CYS 158 1_555 QA CAA PEB . M PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? 
covale ? covale9 K SG CYS 139 O CYS 139 1_555 SA CAA PEB . O PEB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? 
covale ? covale10 L SG CYS 158 Q CYS 158 1_555 VA CAA PEB . Q PEB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                PEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOERYTHROBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHC C4C PEB sing 235 n n 
CHC C1D PEB sing 236 n n 
CHC HHC1 PEB sing 237 n n 
CHC HHC2 PEB sing 238 n n 
NC C1C PEB sing 239 n y 
NC C4C PEB sing 240 n y 
NC HNC PEB sing 241 n n 
C1C C2C PEB doub 242 n y 
C1C CHB PEB sing 243 n n 
C2C C3C PEB sing 244 n y 
C2C CAC PEB sing 245 n n 
C3C C4C PEB doub 246 n y 
C3C CMC PEB sing 247 n n 
CMC HMC1 PEB sing 248 n n 
CMC HMC2 PEB sing 249 n n 
CMC HMC3 PEB sing 250 n n 
CAC CBC PEB sing 251 n n 
CAC HAC1 PEB sing 252 n n 
CAC HAC2 PEB sing 253 n n 
CBC CGC PEB sing 254 n n 
CBC HBC1 PEB sing 255 n n 
CBC HBC2 PEB sing 256 n n 
CGC O1C PEB doub 257 n n 
CGC O2C PEB sing 258 n n 
O2C HOC2 PEB sing 259 n n 
ND C1D PEB sing 260 n n 
ND C4D PEB sing 261 n n 
ND HND PEB sing 262 n n 
C1D C2D PEB sing 263 n n 
C1D H1D1 PEB sing 264 n n 
C2D C3D PEB doub 265 n n 
C2D CMD PEB sing 266 n n 
C3D C4D PEB sing 267 n n 
C3D CAD PEB sing 268 n n 
C4D OD PEB doub 269 n n 
CMD HMD1 PEB sing 270 n n 
CMD HMD2 PEB sing 271 n n 
CMD HMD3 PEB sing 272 n n 
CAD CBD PEB doub 273 n n 
CAD HAD1 PEB sing 274 n n 
CBD HBD1 PEB sing 275 n n 
CBD HBD2 PEB sing 276 n n 
NA C1A PEB sing 277 n n 
NA C4A PEB sing 278 n n 
NA HNA PEB sing 279 n n 
C1A C2A PEB sing 280 n n 
C1A OA PEB doub 281 n n 
C2A C3A PEB sing 282 n n 
C2A CMA PEB sing 283 n n 
C2A H2A1 PEB sing 284 n n 
C3A C4A PEB sing 285 n n 
C3A CAA PEB sing 286 n n 
C3A H3A1 PEB sing 287 n n 
C4A CHA PEB doub 288 z n 
CMA HMA1 PEB sing 289 n n 
CMA HMA2 PEB sing 290 n n 
CMA HMA3 PEB sing 291 n n 
CBA CAA PEB sing 292 n n 
CBA HBA1 PEB sing 293 n n 
CBA HBA2 PEB sing 294 n n 
CBA HBA3 PEB sing 295 n n 
CHA C1B PEB sing 296 n n 
CHA HHA1 PEB sing 297 n n 
CAA HAA1 PEB sing 298 n n 
CAA HAA2 PEB sing 299 n n 
NB C1B PEB doub 300 n n 
NB C4B PEB sing 301 n n 
C1B C2B PEB sing 302 n n 
C2B C3B PEB doub 303 n n 
C2B CMB PEB sing 304 n n 
C3B C4B PEB sing 305 n n 
C3B CAB PEB sing 306 n n 
C4B CHB PEB doub 307 z n 
CHB HHB1 PEB sing 308 n n 
CMB HMB1 PEB sing 309 n n 
CMB HMB2 PEB sing 310 n n 
CMB HMB3 PEB sing 311 n n 
CAB CBB PEB sing 312 n n 
CAB HAB1 PEB sing 313 n n 
CAB HAB2 PEB sing 314 n n 
CBB CGB PEB sing 315 n n 
CBB HBB1 PEB sing 316 n n 
CBB HBB2 PEB sing 317 n n 
CGB O1B PEB doub 318 n n 
CGB O2B PEB sing 319 n n 
O2B HOB2 PEB sing 320 n n 
#
_atom_sites.entry_id                     9MGB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 4 PEB A 1 201 2 PEB PEB . 
T 4 PEB A 1 202 3 PEB PEB . 
U 5 PUB B 1 201 1 PUB PUB . 
V 4 PEB B 1 202 4 PEB PEB . 
W 4 PEB B 1 203 5 PEB PEB . 
X 4 PEB C 1 201 2 PEB PEB . 
Y 4 PEB C 1 202 3 PEB PEB . 
Z 5 PUB D 1 201 1 PUB PUB . 
AA 4 PEB D 1 202 4 PEB PEB . 
BA 4 PEB D 1 203 5 PEB PEB . 
CA 4 PEB F 1 201 2 PEB PEB . 
DA 4 PEB F 1 202 3 PEB PEB . 
EA 5 PUB G 1 201 1 PUB PUB . 
FA 4 PEB G 1 202 4 PEB PEB . 
GA 4 PEB G 1 203 5 PEB PEB . 
HA 4 PEB I 1 201 2 PEB PEB . 
IA 4 PEB I 1 202 3 PEB PEB . 
JA 5 PUB J 1 201 1 PUB PUB . 
KA 4 PEB J 1 202 4 PEB PEB . 
LA 4 PEB J 1 203 5 PEB PEB . 
MA 4 PEB L 1 201 2 PEB PEB . 
NA 4 PEB L 1 202 3 PEB PEB . 
OA 5 PUB M 1 201 1 PUB PUB . 
PA 4 PEB M 1 202 4 PEB PEB . 
QA 4 PEB M 1 203 5 PEB PEB . 
RA 4 PEB O 1 201 2 PEB PEB . 
SA 4 PEB O 1 202 3 PEB PEB . 
TA 5 PUB Q 1 201 1 PUB PUB . 
UA 4 PEB Q 1 202 4 PEB PEB . 
VA 4 PEB Q 1 203 5 PEB PEB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHC PEB . . . V 4 181.393 181.658 185.205 1 15.19 ? CHC PEB 202 B 1 
HETATM 2 N NC PEB . . . V 4 183.473 180.287 185.414 1 14.91 ? NC PEB 202 B 1 
HETATM 3 C C1C PEB . . . V 4 183.997 179.098 184.961 1 16.5 ? C1C PEB 202 B 1 
HETATM 4 C C2C PEB . . . V 4 183.001 178.509 184.144 1 17.77 ? C2C PEB 202 B 1 
HETATM 5 C C3C PEB . . . V 4 181.91 179.376 184.128 1 15.98 ? C3C PEB 202 B 1 
HETATM 6 C C4C PEB . . . V 4 182.225 180.46 184.917 1 15.61 ? C4C PEB 202 B 1 
HETATM 7 C CMC PEB . . . V 4 180.632 179.142 183.379 1 13.9 ? CMC PEB 202 B 1 
HETATM 8 C CAC PEB . . . V 4 183.124 177.192 183.435 1 15.05 ? CAC PEB 202 B 1 
HETATM 9 C CBC PEB . . . V 4 183.901 177.289 182.128 1 17.98 ? CBC PEB 202 B 1 
HETATM 10 C CGC PEB . . . V 4 185.405 177.165 182.298 1 21.83 ? CGC PEB 202 B 1 
HETATM 11 O O1C PEB . . . V 4 186.12 178.106 181.905 1 25.44 ? O1C PEB 202 B 1 
HETATM 12 O O2C PEB . . . V 4 185.854 176.135 182.836 1 25.88 ? O2C PEB 202 B 1 
HETATM 13 N ND PEB . . . V 4 181.367 182.485 182.925 1 14.71 ? ND PEB 202 B 1 
HETATM 14 C C1D PEB . . . V 4 181.756 182.823 184.279 1 15.15 ? C1D PEB 202 B 1 
HETATM 15 C C2D PEB . . . V 4 180.89 184.039 184.492 1 15.69 ? C2D PEB 202 B 1 
HETATM 16 C C3D PEB . . . V 4 179.824 183.933 183.674 1 13.27 ? C3D PEB 202 B 1 
HETATM 17 C C4D PEB . . . V 4 180.19 183.052 182.59 1 14 ? C4D PEB 202 B 1 
HETATM 18 C CMD PEB . . . V 4 181.262 185.133 185.443 1 16.2 ? CMD PEB 202 B 1 
HETATM 19 C CAD PEB . . . V 4 178.523 184.579 183.841 1 17.24 ? CAD PEB 202 B 1 
HETATM 20 C CBD PEB . . . V 4 177.869 185.188 182.892 1 14.88 ? CBD PEB 202 B 1 
HETATM 21 O OD PEB . . . V 4 179.554 182.848 181.546 1 16.41 ? OD PEB 202 B 1 
HETATM 22 N NA PEB . . . V 4 189.474 181.578 188.911 1 15.78 ? NA PEB 202 B 1 
HETATM 23 C C1A PEB . . . V 4 190.424 182.348 189.517 1 18.57 ? C1A PEB 202 B 1 
HETATM 24 C C2A PEB . . . V 4 189.855 183.73 189.719 1 17.45 ? C2A PEB 202 B 1 
HETATM 25 C C3A PEB . . . V 4 188.499 183.681 188.99 1 18.48 ? C3A PEB 202 B 1 
HETATM 26 C C4A PEB . . . V 4 188.569 182.377 188.237 1 15.18 ? C4A PEB 202 B 1 
HETATM 27 C CMA PEB . . . V 4 189.814 184.111 191.185 1 18.37 ? CMA PEB 202 B 1 
HETATM 28 C CBA PEB . . . V 4 188.409 186.216 188.724 1 15.61 ? CBA PEB 202 B 1 
HETATM 29 O OA PEB . . . V 4 191.529 181.974 189.86 1 20.08 ? OA PEB 202 B 1 
HETATM 30 C CHA PEB . . . V 4 187.882 182.017 187.081 1 14.85 ? CHA PEB 202 B 1 
HETATM 31 C CAA PEB . . . V 4 188.168 184.867 188.08 1 18.67 ? CAA PEB 202 B 1 
HETATM 32 N NB PEB . . . V 4 186.24 180.276 186.716 1 13.89 ? NB PEB 202 B 1 
HETATM 33 C C1B PEB . . . V 4 187.527 180.729 186.774 1 13.66 ? C1B PEB 202 B 1 
HETATM 34 C C2B PEB . . . V 4 188.436 179.643 186.419 1 15.23 ? C2B PEB 202 B 1 
HETATM 35 C C3B PEB . . . V 4 187.664 178.636 185.934 1 16.51 ? C3B PEB 202 B 1 
HETATM 36 C C4B PEB . . . V 4 186.305 179.149 185.948 1 16.12 ? C4B PEB 202 B 1 
HETATM 37 C CHB PEB . . . V 4 185.248 178.58 185.267 1 17.22 ? CHB PEB 202 B 1 
HETATM 38 C CMB PEB . . . V 4 189.93 179.62 186.549 1 14.43 ? CMB PEB 202 B 1 
HETATM 39 C CAB PEB . . . V 4 188.085 177.274 185.467 1 17.81 ? CAB PEB 202 B 1 
HETATM 40 C CBB PEB . . . V 4 187.695 176.148 186.429 1 21.33 ? CBB PEB 202 B 1 
HETATM 41 C CGB PEB . . . V 4 188.539 176.098 187.69 1 28.7 ? CGB PEB 202 B 1 
HETATM 42 O O1B PEB . . . V 4 188.073 176.599 188.729 1 28.4 ? O1B PEB 202 B 1 
HETATM 43 O O2B PEB . . . V 4 189.658 175.556 187.628 1 31 ? O2B PEB 202 B 1 
#
_model_server_stats.io_time_ms              90 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#