data_9MGJ # _model_server_result.job_id HoGVXnUjt-CUTTGAUHHy3Q _model_server_result.datetime_utc '2025-03-12 19:59:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9MGJ # _exptl.entry_id 9MGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9MGJ _cell.length_a 93.012 _cell.length_b 93.012 _cell.length_c 130.529 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 46.506 -80.550755 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 93.012 0 0 4 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 93.012 -53.700503 43.509667 5 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -53.700503 43.509667 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 46.506 26.850252 43.509667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 231 n n C1 O1 MAN sing 232 n n C1 O5 MAN sing 233 n n C1 H1 MAN sing 234 n n C2 C3 MAN sing 235 n n C2 O2 MAN sing 236 n n C2 H2 MAN sing 237 n n C3 C4 MAN sing 238 n n C3 O3 MAN sing 239 n n C3 H3 MAN sing 240 n n C4 C5 MAN sing 241 n n C4 O4 MAN sing 242 n n C4 H4 MAN sing 243 n n C5 C6 MAN sing 244 n n C5 O5 MAN sing 245 n n C5 H5 MAN sing 246 n n C6 O6 MAN sing 247 n n C6 H61 MAN sing 248 n n C6 H62 MAN sing 249 n n O1 HO1 MAN sing 250 n n O2 HO2 MAN sing 251 n n O3 HO3 MAN sing 252 n n O4 HO4 MAN sing 253 n n O6 HO6 MAN sing 254 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9MGJ _atom_sites.fract_transf_matrix[1][1] 0.010751 _atom_sites.fract_transf_matrix[1][2] 0.006207 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 101 GOL GOL . C 3 MAN A 1 302 201 MAN MAN . D 4 HOH A 1 401 248 HOH HOH . D 4 HOH A 2 402 138 HOH HOH . D 4 HOH A 3 403 174 HOH HOH . D 4 HOH A 4 404 239 HOH HOH . D 4 HOH A 5 405 241 HOH HOH . D 4 HOH A 6 406 172 HOH HOH . D 4 HOH A 7 407 171 HOH HOH . D 4 HOH A 8 408 64 HOH HOH . D 4 HOH A 9 409 235 HOH HOH . D 4 HOH A 10 410 156 HOH HOH . D 4 HOH A 11 411 197 HOH HOH . D 4 HOH A 12 412 154 HOH HOH . D 4 HOH A 13 413 107 HOH HOH . D 4 HOH A 14 414 257 HOH HOH . D 4 HOH A 15 415 136 HOH HOH . D 4 HOH A 16 416 204 HOH HOH . D 4 HOH A 17 417 66 HOH HOH . D 4 HOH A 18 418 67 HOH HOH . D 4 HOH A 19 419 252 HOH HOH . D 4 HOH A 20 420 46 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 27 HOH HOH . D 4 HOH A 23 423 3 HOH HOH . D 4 HOH A 24 424 127 HOH HOH . D 4 HOH A 25 425 100 HOH HOH . D 4 HOH A 26 426 17 HOH HOH . D 4 HOH A 27 427 122 HOH HOH . D 4 HOH A 28 428 6 HOH HOH . D 4 HOH A 29 429 260 HOH HOH . D 4 HOH A 30 430 152 HOH HOH . D 4 HOH A 31 431 144 HOH HOH . D 4 HOH A 32 432 84 HOH HOH . D 4 HOH A 33 433 5 HOH HOH . D 4 HOH A 34 434 77 HOH HOH . D 4 HOH A 35 435 76 HOH HOH . D 4 HOH A 36 436 43 HOH HOH . D 4 HOH A 37 437 78 HOH HOH . D 4 HOH A 38 438 166 HOH HOH . D 4 HOH A 39 439 246 HOH HOH . D 4 HOH A 40 440 150 HOH HOH . D 4 HOH A 41 441 36 HOH HOH . D 4 HOH A 42 442 41 HOH HOH . D 4 HOH A 43 443 80 HOH HOH . D 4 HOH A 44 444 15 HOH HOH . D 4 HOH A 45 445 155 HOH HOH . D 4 HOH A 46 446 26 HOH HOH . D 4 HOH A 47 447 184 HOH HOH . D 4 HOH A 48 448 142 HOH HOH . D 4 HOH A 49 449 30 HOH HOH . D 4 HOH A 50 450 1 HOH HOH . D 4 HOH A 51 451 93 HOH HOH . D 4 HOH A 52 452 54 HOH HOH . D 4 HOH A 53 453 229 HOH HOH . D 4 HOH A 54 454 20 HOH HOH . D 4 HOH A 55 455 121 HOH HOH . D 4 HOH A 56 456 134 HOH HOH . D 4 HOH A 57 457 85 HOH HOH . D 4 HOH A 58 458 72 HOH HOH . D 4 HOH A 59 459 242 HOH HOH . D 4 HOH A 60 460 245 HOH HOH . D 4 HOH A 61 461 146 HOH HOH . D 4 HOH A 62 462 19 HOH HOH . D 4 HOH A 63 463 44 HOH HOH . D 4 HOH A 64 464 125 HOH HOH . D 4 HOH A 65 465 89 HOH HOH . D 4 HOH A 66 466 12 HOH HOH . D 4 HOH A 67 467 71 HOH HOH . D 4 HOH A 68 468 37 HOH HOH . D 4 HOH A 69 469 47 HOH HOH . D 4 HOH A 70 470 237 HOH HOH . D 4 HOH A 71 471 73 HOH HOH . D 4 HOH A 72 472 94 HOH HOH . D 4 HOH A 73 473 11 HOH HOH . D 4 HOH A 74 474 88 HOH HOH . D 4 HOH A 75 475 53 HOH HOH . D 4 HOH A 76 476 110 HOH HOH . D 4 HOH A 77 477 165 HOH HOH . D 4 HOH A 78 478 2 HOH HOH . D 4 HOH A 79 479 145 HOH HOH . D 4 HOH A 80 480 124 HOH HOH . D 4 HOH A 81 481 4 HOH HOH . D 4 HOH A 82 482 183 HOH HOH . D 4 HOH A 83 483 68 HOH HOH . D 4 HOH A 84 484 42 HOH HOH . D 4 HOH A 85 485 129 HOH HOH . D 4 HOH A 86 486 109 HOH HOH . D 4 HOH A 87 487 164 HOH HOH . D 4 HOH A 88 488 18 HOH HOH . D 4 HOH A 89 489 29 HOH HOH . D 4 HOH A 90 490 201 HOH HOH . D 4 HOH A 91 491 176 HOH HOH . D 4 HOH A 92 492 120 HOH HOH . D 4 HOH A 93 493 65 HOH HOH . D 4 HOH A 94 494 7 HOH HOH . D 4 HOH A 95 495 101 HOH HOH . D 4 HOH A 96 496 21 HOH HOH . D 4 HOH A 97 497 119 HOH HOH . D 4 HOH A 98 498 9 HOH HOH . D 4 HOH A 99 499 116 HOH HOH . D 4 HOH A 100 500 157 HOH HOH . D 4 HOH A 101 501 60 HOH HOH . D 4 HOH A 102 502 52 HOH HOH . D 4 HOH A 103 503 131 HOH HOH . D 4 HOH A 104 504 83 HOH HOH . D 4 HOH A 105 505 206 HOH HOH . D 4 HOH A 106 506 103 HOH HOH . D 4 HOH A 107 507 59 HOH HOH . D 4 HOH A 108 508 106 HOH HOH . D 4 HOH A 109 509 32 HOH HOH . D 4 HOH A 110 510 148 HOH HOH . D 4 HOH A 111 511 62 HOH HOH . D 4 HOH A 112 512 87 HOH HOH . D 4 HOH A 113 513 79 HOH HOH . D 4 HOH A 114 514 56 HOH HOH . D 4 HOH A 115 515 180 HOH HOH . D 4 HOH A 116 516 51 HOH HOH . D 4 HOH A 117 517 262 HOH HOH . D 4 HOH A 118 518 187 HOH HOH . D 4 HOH A 119 519 13 HOH HOH . D 4 HOH A 120 520 233 HOH HOH . D 4 HOH A 121 521 33 HOH HOH . D 4 HOH A 122 522 202 HOH HOH . D 4 HOH A 123 523 90 HOH HOH . D 4 HOH A 124 524 63 HOH HOH . D 4 HOH A 125 525 95 HOH HOH . D 4 HOH A 126 526 225 HOH HOH . D 4 HOH A 127 527 92 HOH HOH . D 4 HOH A 128 528 158 HOH HOH . D 4 HOH A 129 529 10 HOH HOH . D 4 HOH A 130 530 99 HOH HOH . D 4 HOH A 131 531 140 HOH HOH . D 4 HOH A 132 532 22 HOH HOH . D 4 HOH A 133 533 8 HOH HOH . D 4 HOH A 134 534 98 HOH HOH . D 4 HOH A 135 535 24 HOH HOH . D 4 HOH A 136 536 70 HOH HOH . D 4 HOH A 137 537 16 HOH HOH . D 4 HOH A 138 538 173 HOH HOH . D 4 HOH A 139 539 108 HOH HOH . D 4 HOH A 140 540 111 HOH HOH . D 4 HOH A 141 541 191 HOH HOH . D 4 HOH A 142 542 57 HOH HOH . D 4 HOH A 143 543 139 HOH HOH . D 4 HOH A 144 544 243 HOH HOH . D 4 HOH A 145 545 232 HOH HOH . D 4 HOH A 146 546 210 HOH HOH . D 4 HOH A 147 547 25 HOH HOH . D 4 HOH A 148 548 163 HOH HOH . D 4 HOH A 149 549 69 HOH HOH . D 4 HOH A 150 550 192 HOH HOH . D 4 HOH A 151 551 208 HOH HOH . D 4 HOH A 152 552 167 HOH HOH . D 4 HOH A 153 553 113 HOH HOH . D 4 HOH A 154 554 49 HOH HOH . D 4 HOH A 155 555 238 HOH HOH . D 4 HOH A 156 556 199 HOH HOH . D 4 HOH A 157 557 244 HOH HOH . D 4 HOH A 158 558 188 HOH HOH . D 4 HOH A 159 559 112 HOH HOH . D 4 HOH A 160 560 58 HOH HOH . D 4 HOH A 161 561 31 HOH HOH . D 4 HOH A 162 562 39 HOH HOH . D 4 HOH A 163 563 189 HOH HOH . D 4 HOH A 164 564 132 HOH HOH . D 4 HOH A 165 565 141 HOH HOH . D 4 HOH A 166 566 186 HOH HOH . D 4 HOH A 167 567 177 HOH HOH . D 4 HOH A 168 568 159 HOH HOH . D 4 HOH A 169 569 149 HOH HOH . D 4 HOH A 170 570 97 HOH HOH . D 4 HOH A 171 571 28 HOH HOH . D 4 HOH A 172 572 231 HOH HOH . D 4 HOH A 173 573 209 HOH HOH . D 4 HOH A 174 574 194 HOH HOH . D 4 HOH A 175 575 123 HOH HOH . D 4 HOH A 176 576 14 HOH HOH . D 4 HOH A 177 577 161 HOH HOH . D 4 HOH A 178 578 179 HOH HOH . D 4 HOH A 179 579 259 HOH HOH . D 4 HOH A 180 580 170 HOH HOH . D 4 HOH A 181 581 221 HOH HOH . D 4 HOH A 182 582 214 HOH HOH . D 4 HOH A 183 583 143 HOH HOH . D 4 HOH A 184 584 211 HOH HOH . D 4 HOH A 185 585 253 HOH HOH . D 4 HOH A 186 586 220 HOH HOH . D 4 HOH A 187 587 162 HOH HOH . D 4 HOH A 188 588 74 HOH HOH . D 4 HOH A 189 589 86 HOH HOH . D 4 HOH A 190 590 50 HOH HOH . D 4 HOH A 191 591 35 HOH HOH . D 4 HOH A 192 592 196 HOH HOH . D 4 HOH A 193 593 236 HOH HOH . D 4 HOH A 194 594 181 HOH HOH . D 4 HOH A 195 595 81 HOH HOH . D 4 HOH A 196 596 205 HOH HOH . D 4 HOH A 197 597 151 HOH HOH . D 4 HOH A 198 598 153 HOH HOH . D 4 HOH A 199 599 114 HOH HOH . D 4 HOH A 200 600 102 HOH HOH . D 4 HOH A 201 601 207 HOH HOH . D 4 HOH A 202 602 256 HOH HOH . D 4 HOH A 203 603 222 HOH HOH . D 4 HOH A 204 604 128 HOH HOH . D 4 HOH A 205 605 240 HOH HOH . D 4 HOH A 206 606 34 HOH HOH . D 4 HOH A 207 607 254 HOH HOH . D 4 HOH A 208 608 216 HOH HOH . D 4 HOH A 209 609 247 HOH HOH . D 4 HOH A 210 610 61 HOH HOH . D 4 HOH A 211 611 137 HOH HOH . D 4 HOH A 212 612 212 HOH HOH . D 4 HOH A 213 613 182 HOH HOH . D 4 HOH A 214 614 91 HOH HOH . D 4 HOH A 215 615 195 HOH HOH . D 4 HOH A 216 616 230 HOH HOH . D 4 HOH A 217 617 104 HOH HOH . D 4 HOH A 218 618 224 HOH HOH . D 4 HOH A 219 619 178 HOH HOH . D 4 HOH A 220 620 175 HOH HOH . D 4 HOH A 221 621 213 HOH HOH . D 4 HOH A 222 622 82 HOH HOH . D 4 HOH A 223 623 118 HOH HOH . D 4 HOH A 224 624 185 HOH HOH . D 4 HOH A 225 625 193 HOH HOH . D 4 HOH A 226 626 203 HOH HOH . D 4 HOH A 227 627 160 HOH HOH . D 4 HOH A 228 628 234 HOH HOH . D 4 HOH A 229 629 126 HOH HOH . D 4 HOH A 230 630 226 HOH HOH . D 4 HOH A 231 631 38 HOH HOH . D 4 HOH A 232 632 223 HOH HOH . D 4 HOH A 233 633 227 HOH HOH . D 4 HOH A 234 634 48 HOH HOH . D 4 HOH A 235 635 55 HOH HOH . D 4 HOH A 236 636 218 HOH HOH . D 4 HOH A 237 637 217 HOH HOH . D 4 HOH A 238 638 45 HOH HOH . D 4 HOH A 239 639 40 HOH HOH . D 4 HOH A 240 640 96 HOH HOH . D 4 HOH A 241 641 219 HOH HOH . D 4 HOH A 242 642 169 HOH HOH . D 4 HOH A 243 643 115 HOH HOH . D 4 HOH A 244 644 130 HOH HOH . D 4 HOH A 245 645 250 HOH HOH . D 4 HOH A 246 646 105 HOH HOH . D 4 HOH A 247 647 255 HOH HOH . D 4 HOH A 248 648 168 HOH HOH . D 4 HOH A 249 649 75 HOH HOH . D 4 HOH A 250 650 251 HOH HOH . D 4 HOH A 251 651 261 HOH HOH . D 4 HOH A 252 652 147 HOH HOH . D 4 HOH A 253 653 117 HOH HOH . D 4 HOH A 254 654 228 HOH HOH . D 4 HOH A 255 655 133 HOH HOH . D 4 HOH A 256 656 249 HOH HOH . D 4 HOH A 257 657 258 HOH HOH . D 4 HOH A 258 658 135 HOH HOH . D 4 HOH A 259 659 190 HOH HOH . D 4 HOH A 260 660 200 HOH HOH . D 4 HOH A 261 661 198 HOH HOH . D 4 HOH A 262 662 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . C 3 28.387 -7.334 13.901 1 23.83 ? C1 MAN 302 A 1 HETATM 2 C C2 MAN . . . C 3 28.65 -8.422 14.92 1 23.06 ? C2 MAN 302 A 1 HETATM 3 C C3 MAN . . . C 3 27.459 -9.371 14.92 1 22.57 ? C3 MAN 302 A 1 HETATM 4 C C4 MAN . . . C 3 26.181 -8.591 15.265 1 24.72 ? C4 MAN 302 A 1 HETATM 5 C C5 MAN . . . C 3 25.983 -7.404 14.326 1 25.91 ? C5 MAN 302 A 1 HETATM 6 C C6 MAN . . . C 3 24.992 -6.354 14.822 1 28.44 ? C6 MAN 302 A 1 HETATM 7 O O1 MAN . . . C 3 28.355 -7.902 12.639 1 26.46 ? O1 MAN 302 A 1 HETATM 8 O O2 MAN . . . C 3 28.794 -7.784 16.16 1 23.17 ? O2 MAN 302 A 1 HETATM 9 O O3 MAN . . . C 3 27.717 -10.416 15.834 1 20.88 ? O3 MAN 302 A 1 HETATM 10 O O4 MAN . . . C 3 25.058 -9.441 15.13 1 26.86 ? O4 MAN 302 A 1 HETATM 11 O O5 MAN . . . C 3 27.195 -6.674 14.211 1 26.13 ? O5 MAN 302 A 1 HETATM 12 O O6 MAN . . . C 3 23.678 -6.822 14.948 1 32.03 ? O6 MAN 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #