data_9MGL # _model_server_result.job_id CQcSq_e8tMUm_ajWr8cPcw _model_server_result.datetime_utc '2025-07-06 22:05:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":707}' # _entry.id 9MGL # _exptl.entry_id 9MGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MGL _cell.length_a 99.74 _cell.length_b 136.97 _cell.length_c 178.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -136.97 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -136.97 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 P N N ? 6 Q N N ? 6 R N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 151 n n C1 C2 EDO sing 152 n n C1 H11 EDO sing 153 n n C1 H12 EDO sing 154 n n O1 HO1 EDO sing 155 n n C2 O2 EDO sing 156 n n C2 H21 EDO sing 157 n n C2 H22 EDO sing 158 n n O2 HO2 EDO sing 159 n n # _atom_sites.entry_id 9MGL _atom_sites.fract_transf_matrix[1][1] 0.010026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00559 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1BLM A 1 701 1 A1BLM GSK . D 4 MTA A 1 702 1 MTA MTA . E 5 SO4 A 1 703 1 SO4 SO4 . F 5 SO4 A 1 704 2 SO4 SO4 . G 5 SO4 A 1 705 3 SO4 SO4 . H 6 EDO A 1 706 1 EDO EDO . I 6 EDO A 1 707 3 EDO EDO . J 6 EDO A 1 708 4 EDO EDO . K 6 EDO A 1 709 5 EDO EDO . L 6 EDO A 1 710 6 EDO EDO . M 6 EDO A 1 711 7 EDO EDO . N 6 EDO A 1 712 10 EDO EDO . O 7 PEG A 1 713 1 PEG PEG . P 6 EDO B 1 401 2 EDO EDO . Q 6 EDO B 1 402 9 EDO EDO . R 6 EDO B 1 403 11 EDO EDO . S 8 HOH A 1 801 53 HOH HOH . S 8 HOH A 2 802 63 HOH HOH . S 8 HOH A 3 803 43 HOH HOH . S 8 HOH A 4 804 146 HOH HOH . S 8 HOH A 5 805 1 HOH HOH . S 8 HOH A 6 806 33 HOH HOH . S 8 HOH A 7 807 128 HOH HOH . S 8 HOH A 8 808 34 HOH HOH . S 8 HOH A 9 809 145 HOH HOH . S 8 HOH A 10 810 157 HOH HOH . S 8 HOH A 11 811 172 HOH HOH . S 8 HOH A 12 812 152 HOH HOH . S 8 HOH A 13 813 140 HOH HOH . S 8 HOH A 14 814 74 HOH HOH . S 8 HOH A 15 815 37 HOH HOH . S 8 HOH A 16 816 153 HOH HOH . S 8 HOH A 17 817 163 HOH HOH . S 8 HOH A 18 818 124 HOH HOH . S 8 HOH A 19 819 57 HOH HOH . S 8 HOH A 20 820 78 HOH HOH . S 8 HOH A 21 821 15 HOH HOH . S 8 HOH A 22 822 190 HOH HOH . S 8 HOH A 23 823 31 HOH HOH . S 8 HOH A 24 824 167 HOH HOH . S 8 HOH A 25 825 86 HOH HOH . S 8 HOH A 26 826 156 HOH HOH . S 8 HOH A 27 827 40 HOH HOH . S 8 HOH A 28 828 10 HOH HOH . S 8 HOH A 29 829 179 HOH HOH . S 8 HOH A 30 830 2 HOH HOH . S 8 HOH A 31 831 67 HOH HOH . S 8 HOH A 32 832 112 HOH HOH . S 8 HOH A 33 833 58 HOH HOH . S 8 HOH A 34 834 187 HOH HOH . S 8 HOH A 35 835 135 HOH HOH . S 8 HOH A 36 836 56 HOH HOH . S 8 HOH A 37 837 119 HOH HOH . S 8 HOH A 38 838 39 HOH HOH . S 8 HOH A 39 839 5 HOH HOH . S 8 HOH A 40 840 175 HOH HOH . S 8 HOH A 41 841 38 HOH HOH . S 8 HOH A 42 842 12 HOH HOH . S 8 HOH A 43 843 81 HOH HOH . S 8 HOH A 44 844 64 HOH HOH . S 8 HOH A 45 845 27 HOH HOH . S 8 HOH A 46 846 65 HOH HOH . S 8 HOH A 47 847 75 HOH HOH . S 8 HOH A 48 848 4 HOH HOH . S 8 HOH A 49 849 26 HOH HOH . S 8 HOH A 50 850 131 HOH HOH . S 8 HOH A 51 851 127 HOH HOH . S 8 HOH A 52 852 7 HOH HOH . S 8 HOH A 53 853 162 HOH HOH . S 8 HOH A 54 854 62 HOH HOH . S 8 HOH A 55 855 195 HOH HOH . S 8 HOH A 56 856 3 HOH HOH . S 8 HOH A 57 857 8 HOH HOH . S 8 HOH A 58 858 20 HOH HOH . S 8 HOH A 59 859 164 HOH HOH . S 8 HOH A 60 860 186 HOH HOH . S 8 HOH A 61 861 19 HOH HOH . S 8 HOH A 62 862 88 HOH HOH . S 8 HOH A 63 863 181 HOH HOH . S 8 HOH A 64 864 32 HOH HOH . S 8 HOH A 65 865 183 HOH HOH . S 8 HOH A 66 866 129 HOH HOH . S 8 HOH A 67 867 192 HOH HOH . S 8 HOH A 68 868 73 HOH HOH . S 8 HOH A 69 869 184 HOH HOH . S 8 HOH A 70 870 147 HOH HOH . S 8 HOH A 71 871 132 HOH HOH . S 8 HOH A 72 872 149 HOH HOH . S 8 HOH A 73 873 89 HOH HOH . S 8 HOH A 74 874 136 HOH HOH . S 8 HOH A 75 875 191 HOH HOH . S 8 HOH A 76 876 165 HOH HOH . S 8 HOH A 77 877 137 HOH HOH . S 8 HOH A 78 878 159 HOH HOH . S 8 HOH A 79 879 180 HOH HOH . S 8 HOH A 80 880 83 HOH HOH . S 8 HOH A 81 881 196 HOH HOH . S 8 HOH A 82 882 166 HOH HOH . S 8 HOH A 83 883 35 HOH HOH . S 8 HOH A 84 884 193 HOH HOH . S 8 HOH A 85 885 76 HOH HOH . S 8 HOH A 86 886 84 HOH HOH . S 8 HOH A 87 887 36 HOH HOH . S 8 HOH A 88 888 47 HOH HOH . S 8 HOH A 89 889 48 HOH HOH . S 8 HOH A 90 890 28 HOH HOH . S 8 HOH A 91 891 22 HOH HOH . S 8 HOH A 92 892 45 HOH HOH . S 8 HOH A 93 893 6 HOH HOH . S 8 HOH A 94 894 160 HOH HOH . S 8 HOH A 95 895 72 HOH HOH . S 8 HOH A 96 896 185 HOH HOH . S 8 HOH A 97 897 90 HOH HOH . S 8 HOH A 98 898 9 HOH HOH . S 8 HOH A 99 899 21 HOH HOH . S 8 HOH A 100 900 194 HOH HOH . S 8 HOH A 101 901 11 HOH HOH . S 8 HOH A 102 902 170 HOH HOH . S 8 HOH A 103 903 80 HOH HOH . S 8 HOH A 104 904 79 HOH HOH . S 8 HOH A 105 905 61 HOH HOH . S 8 HOH A 106 906 77 HOH HOH . S 8 HOH A 107 907 161 HOH HOH . S 8 HOH A 108 908 50 HOH HOH . S 8 HOH A 109 909 82 HOH HOH . S 8 HOH A 110 910 85 HOH HOH . S 8 HOH A 111 911 71 HOH HOH . S 8 HOH A 112 912 23 HOH HOH . S 8 HOH A 113 913 66 HOH HOH . S 8 HOH A 114 914 46 HOH HOH . S 8 HOH A 115 915 150 HOH HOH . S 8 HOH A 116 916 122 HOH HOH . S 8 HOH A 117 917 14 HOH HOH . S 8 HOH A 118 918 68 HOH HOH . S 8 HOH A 119 919 125 HOH HOH . S 8 HOH A 120 920 189 HOH HOH . S 8 HOH A 121 921 182 HOH HOH . S 8 HOH A 122 922 87 HOH HOH . S 8 HOH A 123 923 148 HOH HOH . S 8 HOH A 124 924 25 HOH HOH . T 8 HOH B 1 501 60 HOH HOH . T 8 HOH B 2 502 126 HOH HOH . T 8 HOH B 3 503 105 HOH HOH . T 8 HOH B 4 504 155 HOH HOH . T 8 HOH B 5 505 95 HOH HOH . T 8 HOH B 6 506 51 HOH HOH . T 8 HOH B 7 507 101 HOH HOH . T 8 HOH B 8 508 96 HOH HOH . T 8 HOH B 9 509 138 HOH HOH . T 8 HOH B 10 510 24 HOH HOH . T 8 HOH B 11 511 171 HOH HOH . T 8 HOH B 12 512 109 HOH HOH . T 8 HOH B 13 513 143 HOH HOH . T 8 HOH B 14 514 110 HOH HOH . T 8 HOH B 15 515 30 HOH HOH . T 8 HOH B 16 516 13 HOH HOH . T 8 HOH B 17 517 174 HOH HOH . T 8 HOH B 18 518 103 HOH HOH . T 8 HOH B 19 519 41 HOH HOH . T 8 HOH B 20 520 98 HOH HOH . T 8 HOH B 21 521 99 HOH HOH . T 8 HOH B 22 522 178 HOH HOH . T 8 HOH B 23 523 197 HOH HOH . T 8 HOH B 24 524 144 HOH HOH . T 8 HOH B 25 525 158 HOH HOH . T 8 HOH B 26 526 177 HOH HOH . T 8 HOH B 27 527 42 HOH HOH . T 8 HOH B 28 528 59 HOH HOH . T 8 HOH B 29 529 29 HOH HOH . T 8 HOH B 30 530 116 HOH HOH . T 8 HOH B 31 531 100 HOH HOH . T 8 HOH B 32 532 106 HOH HOH . T 8 HOH B 33 533 111 HOH HOH . T 8 HOH B 34 534 115 HOH HOH . T 8 HOH B 35 535 151 HOH HOH . T 8 HOH B 36 536 198 HOH HOH . T 8 HOH B 37 537 92 HOH HOH . T 8 HOH B 38 538 139 HOH HOH . T 8 HOH B 39 539 168 HOH HOH . T 8 HOH B 40 540 188 HOH HOH . T 8 HOH B 41 541 94 HOH HOH . T 8 HOH B 42 542 91 HOH HOH . T 8 HOH B 43 543 102 HOH HOH . T 8 HOH B 44 544 142 HOH HOH . T 8 HOH B 45 545 104 HOH HOH . T 8 HOH B 46 546 107 HOH HOH . T 8 HOH B 47 547 97 HOH HOH . T 8 HOH B 48 548 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 31.212 -45.083 3.719 1 34.85 ? C1 EDO 707 A 1 HETATM 2 O O1 EDO . . . I 6 30.098 -45.295 2.847 1 42.24 ? O1 EDO 707 A 1 HETATM 3 C C2 EDO . . . I 6 32.372 -44.588 2.862 1 39.75 ? C2 EDO 707 A 1 HETATM 4 O O2 EDO . . . I 6 32.054 -43.288 2.349 1 35.49 ? O2 EDO 707 A 1 HETATM 5 H H11 EDO . . . I 6 30.961 -44.346 4.484 1 41.83 ? H11 EDO 707 A 1 HETATM 6 H H12 EDO . . . I 6 31.481 -46.013 4.224 1 41.83 ? H12 EDO 707 A 1 HETATM 7 H HO1 EDO . . . I 6 29.399 -45.761 3.324 1 50.68 ? HO1 EDO 707 A 1 HETATM 8 H H21 EDO . . . I 6 33.284 -44.539 3.462 1 47.7 ? H21 EDO 707 A 1 HETATM 9 H H22 EDO . . . I 6 32.55 -45.281 2.038 1 47.7 ? H22 EDO 707 A 1 HETATM 10 H HO2 EDO . . . I 6 32.012 -43.324 1.384 1 42.59 ? HO2 EDO 707 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #