data_9MGR
#
_model_server_result.job_id            zFEX4BiYQAnargmSLdbOKQ 
_model_server_result.datetime_utc      '2025-07-05 15:17:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mgr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    9MGR 
#
_exptl.entry_id    9MGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MGR 
_cell.length_a            102.946 
_cell.length_b            137.889 
_cell.length_c            178.607 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -137.889 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -137.889 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 338 n n 
CS HCS1 MTA sing 339 n n 
CS HCS2 MTA sing 340 n n 
CS HCS3 MTA sing 341 n n 
S5' C5' MTA sing 342 n n 
C5' C4' MTA sing 343 n n 
C5' "H5'1" MTA sing 344 n n 
C5' "H5'2" MTA sing 345 n n 
C4' O4' MTA sing 346 n n 
C4' C3' MTA sing 347 n n 
C4' H4' MTA sing 348 n n 
O4' C1' MTA sing 349 n n 
C2' O2' MTA sing 350 n n 
C2' C3' MTA sing 351 n n 
C2' C1' MTA sing 352 n n 
C2' H2' MTA sing 353 n n 
O2' HO2' MTA sing 354 n n 
C3' O3' MTA sing 355 n n 
C3' H3' MTA sing 356 n n 
O3' H3T MTA sing 357 n n 
C1' N9 MTA sing 358 n n 
C1' H1' MTA sing 359 n n 
N9 C8 MTA sing 360 n y 
N9 C4 MTA sing 361 n y 
C8 N7 MTA doub 362 n y 
C8 H8 MTA sing 363 n n 
N7 C5 MTA sing 364 n y 
C5 C6 MTA sing 365 n y 
C5 C4 MTA doub 366 n y 
C6 N6 MTA sing 367 n n 
C6 N1 MTA doub 368 n y 
N6 H61 MTA sing 369 n n 
N6 H62 MTA sing 370 n n 
N1 C2 MTA sing 371 n y 
C2 N3 MTA doub 372 n y 
C2 H2 MTA sing 373 n n 
N3 C4 MTA sing 374 n y 
#
_atom_sites.entry_id                     9MGR 
_atom_sites.fract_transf_matrix[1][1]    0.009714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1BLF A 1 701 1 A1BLF LIG . 
D 4 MTA A 1 702 1 MTA MTA . 
E 5 EDO A 1 703 1 EDO EDO . 
F 5 EDO A 1 704 2 EDO EDO . 
G 5 EDO A 1 705 3 EDO EDO . 
H 5 EDO A 1 706 4 EDO EDO . 
I 5 EDO A 1 707 5 EDO EDO . 
J 5 EDO A 1 708 6 EDO EDO . 
K 5 EDO A 1 709 7 EDO EDO . 
L 5 EDO A 1 710 8 EDO EDO . 
M 5 EDO A 1 711 10 EDO EDO . 
N 5 EDO A 1 712 11 EDO EDO . 
O 5 EDO A 1 713 12 EDO EDO . 
P 5 EDO A 1 714 13 EDO EDO . 
Q 5 EDO A 1 715 14 EDO EDO . 
R 5 EDO A 1 716 15 EDO EDO . 
S 5 EDO B 1 401 9 EDO EDO . 
T 6 HOH A 1 801 125 HOH HOH . 
T 6 HOH A 2 802 107 HOH HOH . 
T 6 HOH A 3 803 95 HOH HOH . 
T 6 HOH A 4 804 54 HOH HOH . 
T 6 HOH A 5 805 90 HOH HOH . 
T 6 HOH A 6 806 53 HOH HOH . 
T 6 HOH A 7 807 38 HOH HOH . 
T 6 HOH A 8 808 58 HOH HOH . 
T 6 HOH A 9 809 25 HOH HOH . 
T 6 HOH A 10 810 33 HOH HOH . 
T 6 HOH A 11 811 128 HOH HOH . 
T 6 HOH A 12 812 8 HOH HOH . 
T 6 HOH A 13 813 23 HOH HOH . 
T 6 HOH A 14 814 122 HOH HOH . 
T 6 HOH A 15 815 75 HOH HOH . 
T 6 HOH A 16 816 102 HOH HOH . 
T 6 HOH A 17 817 48 HOH HOH . 
T 6 HOH A 18 818 43 HOH HOH . 
T 6 HOH A 19 819 41 HOH HOH . 
T 6 HOH A 20 820 121 HOH HOH . 
T 6 HOH A 21 821 42 HOH HOH . 
T 6 HOH A 22 822 44 HOH HOH . 
T 6 HOH A 23 823 40 HOH HOH . 
T 6 HOH A 24 824 6 HOH HOH . 
T 6 HOH A 25 825 50 HOH HOH . 
T 6 HOH A 26 826 59 HOH HOH . 
T 6 HOH A 27 827 29 HOH HOH . 
T 6 HOH A 28 828 16 HOH HOH . 
T 6 HOH A 29 829 51 HOH HOH . 
T 6 HOH A 30 830 24 HOH HOH . 
T 6 HOH A 31 831 65 HOH HOH . 
T 6 HOH A 32 832 55 HOH HOH . 
T 6 HOH A 33 833 127 HOH HOH . 
T 6 HOH A 34 834 93 HOH HOH . 
T 6 HOH A 35 835 30 HOH HOH . 
T 6 HOH A 36 836 82 HOH HOH . 
T 6 HOH A 37 837 27 HOH HOH . 
T 6 HOH A 38 838 52 HOH HOH . 
T 6 HOH A 39 839 19 HOH HOH . 
T 6 HOH A 40 840 105 HOH HOH . 
T 6 HOH A 41 841 83 HOH HOH . 
T 6 HOH A 42 842 15 HOH HOH . 
T 6 HOH A 43 843 106 HOH HOH . 
T 6 HOH A 44 844 3 HOH HOH . 
T 6 HOH A 45 845 99 HOH HOH . 
T 6 HOH A 46 846 112 HOH HOH . 
T 6 HOH A 47 847 36 HOH HOH . 
T 6 HOH A 48 848 35 HOH HOH . 
T 6 HOH A 49 849 26 HOH HOH . 
T 6 HOH A 50 850 37 HOH HOH . 
T 6 HOH A 51 851 21 HOH HOH . 
T 6 HOH A 52 852 12 HOH HOH . 
T 6 HOH A 53 853 73 HOH HOH . 
T 6 HOH A 54 854 86 HOH HOH . 
T 6 HOH A 55 855 85 HOH HOH . 
T 6 HOH A 56 856 101 HOH HOH . 
T 6 HOH A 57 857 68 HOH HOH . 
T 6 HOH A 58 858 88 HOH HOH . 
T 6 HOH A 59 859 87 HOH HOH . 
T 6 HOH A 60 860 96 HOH HOH . 
T 6 HOH A 61 861 34 HOH HOH . 
T 6 HOH A 62 862 1 HOH HOH . 
T 6 HOH A 63 863 18 HOH HOH . 
T 6 HOH A 64 864 5 HOH HOH . 
T 6 HOH A 65 865 32 HOH HOH . 
T 6 HOH A 66 866 17 HOH HOH . 
T 6 HOH A 67 867 22 HOH HOH . 
T 6 HOH A 68 868 20 HOH HOH . 
T 6 HOH A 69 869 104 HOH HOH . 
T 6 HOH A 70 870 98 HOH HOH . 
T 6 HOH A 71 871 28 HOH HOH . 
T 6 HOH A 72 872 76 HOH HOH . 
T 6 HOH A 73 873 4 HOH HOH . 
T 6 HOH A 74 874 64 HOH HOH . 
T 6 HOH A 75 875 13 HOH HOH . 
T 6 HOH A 76 876 2 HOH HOH . 
T 6 HOH A 77 877 111 HOH HOH . 
T 6 HOH A 78 878 97 HOH HOH . 
T 6 HOH A 79 879 100 HOH HOH . 
T 6 HOH A 80 880 14 HOH HOH . 
T 6 HOH A 81 881 79 HOH HOH . 
T 6 HOH A 82 882 72 HOH HOH . 
T 6 HOH A 83 883 11 HOH HOH . 
T 6 HOH A 84 884 129 HOH HOH . 
T 6 HOH A 85 885 115 HOH HOH . 
T 6 HOH A 86 886 78 HOH HOH . 
T 6 HOH A 87 887 131 HOH HOH . 
T 6 HOH A 88 888 56 HOH HOH . 
T 6 HOH A 89 889 67 HOH HOH . 
T 6 HOH A 90 890 116 HOH HOH . 
T 6 HOH A 91 891 71 HOH HOH . 
T 6 HOH A 92 892 120 HOH HOH . 
T 6 HOH A 93 893 49 HOH HOH . 
T 6 HOH A 94 894 94 HOH HOH . 
T 6 HOH A 95 895 103 HOH HOH . 
T 6 HOH A 96 896 80 HOH HOH . 
T 6 HOH A 97 897 89 HOH HOH . 
T 6 HOH A 98 898 47 HOH HOH . 
T 6 HOH A 99 899 84 HOH HOH . 
T 6 HOH A 100 900 63 HOH HOH . 
T 6 HOH A 101 901 45 HOH HOH . 
T 6 HOH A 102 902 109 HOH HOH . 
T 6 HOH A 103 903 77 HOH HOH . 
T 6 HOH A 104 904 108 HOH HOH . 
T 6 HOH A 105 905 57 HOH HOH . 
T 6 HOH A 106 906 132 HOH HOH . 
T 6 HOH A 107 907 130 HOH HOH . 
T 6 HOH A 108 908 66 HOH HOH . 
T 6 HOH A 109 909 119 HOH HOH . 
T 6 HOH A 110 910 74 HOH HOH . 
T 6 HOH A 111 911 70 HOH HOH . 
T 6 HOH A 112 912 113 HOH HOH . 
T 6 HOH A 113 913 46 HOH HOH . 
T 6 HOH A 114 914 81 HOH HOH . 
T 6 HOH A 115 915 91 HOH HOH . 
U 6 HOH B 1 501 60 HOH HOH . 
U 6 HOH B 2 502 39 HOH HOH . 
U 6 HOH B 3 503 126 HOH HOH . 
U 6 HOH B 4 504 10 HOH HOH . 
U 6 HOH B 5 505 124 HOH HOH . 
U 6 HOH B 6 506 31 HOH HOH . 
U 6 HOH B 7 507 62 HOH HOH . 
U 6 HOH B 8 508 123 HOH HOH . 
U 6 HOH B 9 509 7 HOH HOH . 
U 6 HOH B 10 510 9 HOH HOH . 
U 6 HOH B 11 511 114 HOH HOH . 
U 6 HOH B 12 512 61 HOH HOH . 
U 6 HOH B 13 513 118 HOH HOH . 
U 6 HOH B 14 514 69 HOH HOH . 
U 6 HOH B 15 515 92 HOH HOH . 
U 6 HOH B 16 516 117 HOH HOH . 
U 6 HOH B 17 517 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . D 4 -21.712 -98.327 -6.342 1 28.64 ? CS MTA 702 A 1 
HETATM 2 S S5' MTA . . . D 4 -20.159 -97.612 -6.839 1 29.36 ? S5' MTA 702 A 1 
HETATM 3 C C5' MTA . . . D 4 -19.033 -98.969 -6.416 1 27.46 ? C5' MTA 702 A 1 
HETATM 4 C C4' MTA . . . D 4 -19.362 -99.742 -5.155 1 26.98 ? C4' MTA 702 A 1 
HETATM 5 O O4' MTA . . . D 4 -18.379 -100.787 -4.985 1 26.42 ? O4' MTA 702 A 1 
HETATM 6 C C2' MTA . . . D 4 -17.969 -99.241 -3.263 1 26.73 ? C2' MTA 702 A 1 
HETATM 7 O O2' MTA . . . D 4 -17.938 -99.157 -1.853 1 27.79 ? O2' MTA 702 A 1 
HETATM 8 C C3' MTA . . . D 4 -19.346 -98.929 -3.859 1 26.62 ? C3' MTA 702 A 1 
HETATM 9 O O3' MTA . . . D 4 -20.409 -99.339 -3.007 1 26.12 ? O3' MTA 702 A 1 
HETATM 10 C C1' MTA . . . D 4 -17.744 -100.673 -3.735 1 26.05 ? C1' MTA 702 A 1 
HETATM 11 N N9 MTA . . . D 4 -16.342 -101.018 -3.926 1 25.57 ? N9 MTA 702 A 1 
HETATM 12 C C8 MTA . . . D 4 -15.406 -100.283 -4.608 1 25.91 ? C8 MTA 702 A 1 
HETATM 13 N N7 MTA . . . D 4 -14.22 -100.837 -4.627 1 25.65 ? N7 MTA 702 A 1 
HETATM 14 C C5 MTA . . . D 4 -14.384 -102.017 -3.922 1 25.04 ? C5 MTA 702 A 1 
HETATM 15 C C6 MTA . . . D 4 -13.487 -103.049 -3.592 1 25.5 ? C6 MTA 702 A 1 
HETATM 16 N N6 MTA . . . D 4 -12.209 -103.061 -3.959 1 25.83 ? N6 MTA 702 A 1 
HETATM 17 N N1 MTA . . . D 4 -13.974 -104.094 -2.884 1 26.27 ? N1 MTA 702 A 1 
HETATM 18 C C2 MTA . . . D 4 -15.266 -104.08 -2.529 1 26.22 ? C2 MTA 702 A 1 
HETATM 19 N N3 MTA . . . D 4 -16.198 -103.163 -2.778 1 25.58 ? N3 MTA 702 A 1 
HETATM 20 C C4 MTA . . . D 4 -15.69 -102.145 -3.49 1 25.09 ? C4 MTA 702 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           20 
#