data_9MGR
#
_model_server_result.job_id            fKciIOvQIzTNbmtQZdC8WQ 
_model_server_result.datetime_utc      '2025-07-04 21:49:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mgr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":713}' 
#
_entry.id    9MGR 
#
_exptl.entry_id    9MGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MGR 
_cell.length_a            102.946 
_cell.length_b            137.889 
_cell.length_c            178.607 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -137.889 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -137.889 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 175 n n 
C1 C2 EDO sing 176 n n 
C1 H11 EDO sing 177 n n 
C1 H12 EDO sing 178 n n 
O1 HO1 EDO sing 179 n n 
C2 O2 EDO sing 180 n n 
C2 H21 EDO sing 181 n n 
C2 H22 EDO sing 182 n n 
O2 HO2 EDO sing 183 n n 
#
_atom_sites.entry_id                     9MGR 
_atom_sites.fract_transf_matrix[1][1]    0.009714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1BLF A 1 701 1 A1BLF LIG . 
D 4 MTA A 1 702 1 MTA MTA . 
E 5 EDO A 1 703 1 EDO EDO . 
F 5 EDO A 1 704 2 EDO EDO . 
G 5 EDO A 1 705 3 EDO EDO . 
H 5 EDO A 1 706 4 EDO EDO . 
I 5 EDO A 1 707 5 EDO EDO . 
J 5 EDO A 1 708 6 EDO EDO . 
K 5 EDO A 1 709 7 EDO EDO . 
L 5 EDO A 1 710 8 EDO EDO . 
M 5 EDO A 1 711 10 EDO EDO . 
N 5 EDO A 1 712 11 EDO EDO . 
O 5 EDO A 1 713 12 EDO EDO . 
P 5 EDO A 1 714 13 EDO EDO . 
Q 5 EDO A 1 715 14 EDO EDO . 
R 5 EDO A 1 716 15 EDO EDO . 
S 5 EDO B 1 401 9 EDO EDO . 
T 6 HOH A 1 801 125 HOH HOH . 
T 6 HOH A 2 802 107 HOH HOH . 
T 6 HOH A 3 803 95 HOH HOH . 
T 6 HOH A 4 804 54 HOH HOH . 
T 6 HOH A 5 805 90 HOH HOH . 
T 6 HOH A 6 806 53 HOH HOH . 
T 6 HOH A 7 807 38 HOH HOH . 
T 6 HOH A 8 808 58 HOH HOH . 
T 6 HOH A 9 809 25 HOH HOH . 
T 6 HOH A 10 810 33 HOH HOH . 
T 6 HOH A 11 811 128 HOH HOH . 
T 6 HOH A 12 812 8 HOH HOH . 
T 6 HOH A 13 813 23 HOH HOH . 
T 6 HOH A 14 814 122 HOH HOH . 
T 6 HOH A 15 815 75 HOH HOH . 
T 6 HOH A 16 816 102 HOH HOH . 
T 6 HOH A 17 817 48 HOH HOH . 
T 6 HOH A 18 818 43 HOH HOH . 
T 6 HOH A 19 819 41 HOH HOH . 
T 6 HOH A 20 820 121 HOH HOH . 
T 6 HOH A 21 821 42 HOH HOH . 
T 6 HOH A 22 822 44 HOH HOH . 
T 6 HOH A 23 823 40 HOH HOH . 
T 6 HOH A 24 824 6 HOH HOH . 
T 6 HOH A 25 825 50 HOH HOH . 
T 6 HOH A 26 826 59 HOH HOH . 
T 6 HOH A 27 827 29 HOH HOH . 
T 6 HOH A 28 828 16 HOH HOH . 
T 6 HOH A 29 829 51 HOH HOH . 
T 6 HOH A 30 830 24 HOH HOH . 
T 6 HOH A 31 831 65 HOH HOH . 
T 6 HOH A 32 832 55 HOH HOH . 
T 6 HOH A 33 833 127 HOH HOH . 
T 6 HOH A 34 834 93 HOH HOH . 
T 6 HOH A 35 835 30 HOH HOH . 
T 6 HOH A 36 836 82 HOH HOH . 
T 6 HOH A 37 837 27 HOH HOH . 
T 6 HOH A 38 838 52 HOH HOH . 
T 6 HOH A 39 839 19 HOH HOH . 
T 6 HOH A 40 840 105 HOH HOH . 
T 6 HOH A 41 841 83 HOH HOH . 
T 6 HOH A 42 842 15 HOH HOH . 
T 6 HOH A 43 843 106 HOH HOH . 
T 6 HOH A 44 844 3 HOH HOH . 
T 6 HOH A 45 845 99 HOH HOH . 
T 6 HOH A 46 846 112 HOH HOH . 
T 6 HOH A 47 847 36 HOH HOH . 
T 6 HOH A 48 848 35 HOH HOH . 
T 6 HOH A 49 849 26 HOH HOH . 
T 6 HOH A 50 850 37 HOH HOH . 
T 6 HOH A 51 851 21 HOH HOH . 
T 6 HOH A 52 852 12 HOH HOH . 
T 6 HOH A 53 853 73 HOH HOH . 
T 6 HOH A 54 854 86 HOH HOH . 
T 6 HOH A 55 855 85 HOH HOH . 
T 6 HOH A 56 856 101 HOH HOH . 
T 6 HOH A 57 857 68 HOH HOH . 
T 6 HOH A 58 858 88 HOH HOH . 
T 6 HOH A 59 859 87 HOH HOH . 
T 6 HOH A 60 860 96 HOH HOH . 
T 6 HOH A 61 861 34 HOH HOH . 
T 6 HOH A 62 862 1 HOH HOH . 
T 6 HOH A 63 863 18 HOH HOH . 
T 6 HOH A 64 864 5 HOH HOH . 
T 6 HOH A 65 865 32 HOH HOH . 
T 6 HOH A 66 866 17 HOH HOH . 
T 6 HOH A 67 867 22 HOH HOH . 
T 6 HOH A 68 868 20 HOH HOH . 
T 6 HOH A 69 869 104 HOH HOH . 
T 6 HOH A 70 870 98 HOH HOH . 
T 6 HOH A 71 871 28 HOH HOH . 
T 6 HOH A 72 872 76 HOH HOH . 
T 6 HOH A 73 873 4 HOH HOH . 
T 6 HOH A 74 874 64 HOH HOH . 
T 6 HOH A 75 875 13 HOH HOH . 
T 6 HOH A 76 876 2 HOH HOH . 
T 6 HOH A 77 877 111 HOH HOH . 
T 6 HOH A 78 878 97 HOH HOH . 
T 6 HOH A 79 879 100 HOH HOH . 
T 6 HOH A 80 880 14 HOH HOH . 
T 6 HOH A 81 881 79 HOH HOH . 
T 6 HOH A 82 882 72 HOH HOH . 
T 6 HOH A 83 883 11 HOH HOH . 
T 6 HOH A 84 884 129 HOH HOH . 
T 6 HOH A 85 885 115 HOH HOH . 
T 6 HOH A 86 886 78 HOH HOH . 
T 6 HOH A 87 887 131 HOH HOH . 
T 6 HOH A 88 888 56 HOH HOH . 
T 6 HOH A 89 889 67 HOH HOH . 
T 6 HOH A 90 890 116 HOH HOH . 
T 6 HOH A 91 891 71 HOH HOH . 
T 6 HOH A 92 892 120 HOH HOH . 
T 6 HOH A 93 893 49 HOH HOH . 
T 6 HOH A 94 894 94 HOH HOH . 
T 6 HOH A 95 895 103 HOH HOH . 
T 6 HOH A 96 896 80 HOH HOH . 
T 6 HOH A 97 897 89 HOH HOH . 
T 6 HOH A 98 898 47 HOH HOH . 
T 6 HOH A 99 899 84 HOH HOH . 
T 6 HOH A 100 900 63 HOH HOH . 
T 6 HOH A 101 901 45 HOH HOH . 
T 6 HOH A 102 902 109 HOH HOH . 
T 6 HOH A 103 903 77 HOH HOH . 
T 6 HOH A 104 904 108 HOH HOH . 
T 6 HOH A 105 905 57 HOH HOH . 
T 6 HOH A 106 906 132 HOH HOH . 
T 6 HOH A 107 907 130 HOH HOH . 
T 6 HOH A 108 908 66 HOH HOH . 
T 6 HOH A 109 909 119 HOH HOH . 
T 6 HOH A 110 910 74 HOH HOH . 
T 6 HOH A 111 911 70 HOH HOH . 
T 6 HOH A 112 912 113 HOH HOH . 
T 6 HOH A 113 913 46 HOH HOH . 
T 6 HOH A 114 914 81 HOH HOH . 
T 6 HOH A 115 915 91 HOH HOH . 
U 6 HOH B 1 501 60 HOH HOH . 
U 6 HOH B 2 502 39 HOH HOH . 
U 6 HOH B 3 503 126 HOH HOH . 
U 6 HOH B 4 504 10 HOH HOH . 
U 6 HOH B 5 505 124 HOH HOH . 
U 6 HOH B 6 506 31 HOH HOH . 
U 6 HOH B 7 507 62 HOH HOH . 
U 6 HOH B 8 508 123 HOH HOH . 
U 6 HOH B 9 509 7 HOH HOH . 
U 6 HOH B 10 510 9 HOH HOH . 
U 6 HOH B 11 511 114 HOH HOH . 
U 6 HOH B 12 512 61 HOH HOH . 
U 6 HOH B 13 513 118 HOH HOH . 
U 6 HOH B 14 514 69 HOH HOH . 
U 6 HOH B 15 515 92 HOH HOH . 
U 6 HOH B 16 516 117 HOH HOH . 
U 6 HOH B 17 517 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . O 5 -21.347 -50.389 -12.098 1 39.66 ? C1 EDO 713 A 1 
HETATM 2 O O1 EDO . . . O 5 -20.185 -50.727 -11.366 1 38.62 ? O1 EDO 713 A 1 
HETATM 3 C C2 EDO . . . O 5 -22.469 -51.348 -11.905 1 40.22 ? C2 EDO 713 A 1 
HETATM 4 O O2 EDO . . . O 5 -22.292 -52.588 -12.573 1 41.25 ? O2 EDO 713 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#