data_9MGY
#
_model_server_result.job_id            pJwcmK6OXZ63Xq97kjNOKw 
_model_server_result.datetime_utc      '2025-03-04 17:29:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9mgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    9MGY 
#
_exptl.entry_id    9MGY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9MGY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9MGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 116 n n 
PG O2G ATP sing 117 n n 
PG O3G ATP sing 118 n n 
PG O3B ATP sing 119 n n 
O2G HOG2 ATP sing 120 n n 
O3G HOG3 ATP sing 121 n n 
PB O1B ATP doub 122 n n 
PB O2B ATP sing 123 n n 
PB O3B ATP sing 124 n n 
PB O3A ATP sing 125 n n 
O2B HOB2 ATP sing 126 n n 
PA O1A ATP doub 127 n n 
PA O2A ATP sing 128 n n 
PA O3A ATP sing 129 n n 
PA O5' ATP sing 130 n n 
O2A HOA2 ATP sing 131 n n 
O5' C5' ATP sing 132 n n 
C5' C4' ATP sing 133 n n 
C5' "H5'1" ATP sing 134 n n 
C5' "H5'2" ATP sing 135 n n 
C4' O4' ATP sing 136 n n 
C4' C3' ATP sing 137 n n 
C4' H4' ATP sing 138 n n 
O4' C1' ATP sing 139 n n 
C3' O3' ATP sing 140 n n 
C3' C2' ATP sing 141 n n 
C3' H3' ATP sing 142 n n 
O3' HO3' ATP sing 143 n n 
C2' O2' ATP sing 144 n n 
C2' C1' ATP sing 145 n n 
C2' H2' ATP sing 146 n n 
O2' HO2' ATP sing 147 n n 
C1' N9 ATP sing 148 n n 
C1' H1' ATP sing 149 n n 
N9 C8 ATP sing 150 n y 
N9 C4 ATP sing 151 n y 
C8 N7 ATP doub 152 n y 
C8 H8 ATP sing 153 n n 
N7 C5 ATP sing 154 n y 
C5 C6 ATP sing 155 n y 
C5 C4 ATP doub 156 n y 
C6 N6 ATP sing 157 n n 
C6 N1 ATP doub 158 n y 
N6 HN61 ATP sing 159 n n 
N6 HN62 ATP sing 160 n n 
N1 C2 ATP sing 161 n y 
C2 N3 ATP doub 162 n y 
C2 H2 ATP sing 163 n n 
N3 C4 ATP sing 164 n y 
#
_atom_sites.entry_id                     9MGY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP C 1 1101 1102 ATP ATP . 
C 3 A1BLR C 1 1102 1103 A1BLR LIG . 
D 4 HOH C 1 1201 6 HOH HOH . 
D 4 HOH C 2 1202 3 HOH HOH . 
D 4 HOH C 3 1203 2 HOH HOH . 
D 4 HOH C 4 1204 5 HOH HOH . 
D 4 HOH C 5 1205 1 HOH HOH . 
D 4 HOH C 6 1206 7 HOH HOH . 
D 4 HOH C 7 1207 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 106.328 154.161 152.718 1 31.75 ? PG ATP 1101 C 1 
HETATM 2 O O1G ATP . . . B 2 107.086 155.014 153.701 1 31.75 ? O1G ATP 1101 C 1 
HETATM 3 O O2G ATP . . . B 2 107.065 152.936 152.247 1 31.75 -1 O2G ATP 1101 C 1 
HETATM 4 O O3G ATP . . . B 2 104.908 153.91 153.142 1 31.75 ? O3G ATP 1101 C 1 
HETATM 5 P PB ATP . . . B 2 107.369 155.765 150.592 1 31.75 ? PB ATP 1101 C 1 
HETATM 6 O O1B ATP . . . B 2 108.313 156.416 151.558 1 31.75 -1 O1B ATP 1101 C 1 
HETATM 7 O O2B ATP . . . B 2 107.913 154.821 149.566 1 31.75 ? O2B ATP 1101 C 1 
HETATM 8 O O3B ATP . . . B 2 106.162 155.078 151.403 1 31.75 ? O3B ATP 1101 C 1 
HETATM 9 P PA ATP . . . B 2 105.103 156.784 149.274 1 31.75 ? PA ATP 1101 C 1 
HETATM 10 O O1A ATP . . . B 2 104.188 156.779 150.463 1 31.75 -1 O1A ATP 1101 C 1 
HETATM 11 O O2A ATP . . . B 2 105.009 155.671 148.278 1 31.75 ? O2A ATP 1101 C 1 
HETATM 12 O O3A ATP . . . B 2 106.617 156.93 149.789 1 31.75 ? O3A ATP 1101 C 1 
HETATM 13 O O5' ATP . . . B 2 104.832 158.176 148.534 1 31.75 ? O5' ATP 1101 C 1 
HETATM 14 C C5' ATP . . . B 2 103.86 159.039 149.104 1 31.75 ? C5' ATP 1101 C 1 
HETATM 15 C C4' ATP . . . B 2 103.343 160.024 148.074 1 31.75 ? C4' ATP 1101 C 1 
HETATM 16 O O4' ATP . . . B 2 104.047 159.849 146.853 1 31.75 ? O4' ATP 1101 C 1 
HETATM 17 C C3' ATP . . . B 2 101.876 159.786 147.78 1 31.75 ? C3' ATP 1101 C 1 
HETATM 18 O O3' ATP . . . B 2 101.097 160.869 148.293 1 31.75 ? O3' ATP 1101 C 1 
HETATM 19 C C2' ATP . . . B 2 101.762 159.744 146.274 1 31.75 ? C2' ATP 1101 C 1 
HETATM 20 O O2' ATP . . . B 2 100.923 160.809 145.825 1 31.75 ? O2' ATP 1101 C 1 
HETATM 21 C C1' ATP . . . B 2 103.161 159.961 145.746 1 31.75 ? C1' ATP 1101 C 1 
HETATM 22 N N9 ATP . . . B 2 103.507 158.913 144.768 1 31.75 ? N9 ATP 1101 C 1 
HETATM 23 C C8 ATP . . . B 2 104.368 157.911 144.985 1 31.75 ? C8 ATP 1101 C 1 
HETATM 24 N N7 ATP . . . B 2 104.484 157.12 143.895 1 31.75 ? N7 ATP 1101 C 1 
HETATM 25 C C5 ATP . . . B 2 103.682 157.631 142.95 1 31.75 ? C5 ATP 1101 C 1 
HETATM 26 C C6 ATP . . . B 2 103.331 157.286 141.562 1 31.75 ? C6 ATP 1101 C 1 
HETATM 27 N N6 ATP . . . B 2 103.88 156.211 140.955 1 31.75 ? N6 ATP 1101 C 1 
HETATM 28 N N1 ATP . . . B 2 102.451 158.08 140.929 1 31.75 ? N1 ATP 1101 C 1 
HETATM 29 C C2 ATP . . . B 2 101.904 159.149 141.522 1 31.75 ? C2 ATP 1101 C 1 
HETATM 30 N N3 ATP . . . B 2 102.175 159.523 142.779 1 31.75 ? N3 ATP 1101 C 1 
HETATM 31 C C4 ATP . . . B 2 103.044 158.816 143.53 1 31.75 ? C4 ATP 1101 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#