data_9MHF # _model_server_result.job_id WY6wCbABSfMSSg4BVfwKow _model_server_result.datetime_utc '2025-03-25 16:15:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1000}' # _entry.id 9MHF # _exptl.entry_id 9MHF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MHF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 53 A LYS 53 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc2 A OD1 ASN 153 A ASN 153 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 A OD2 ASP 166 A ASP 166 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 F O3G GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 F O3B GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 F O1B GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc7 F O2A GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc8 G MG MG . A MG 2002 1_555 K O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E OG SER 46 E SER 25 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc10 E OG1 THR 64 E THR 43 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 E OD2 ASP 87 E ASP 66 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 I O3G GTP . E GTP 1000 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc13 I O2B GTP . E GTP 1000 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc14 J MG MG . E MG 1001 1_555 L O HOH . E HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 J MG MG . E MG 1001 1_555 L O HOH . E HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 9MHF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GTP A 1 2001 2001 GTP GTP . G 7 MG A 1 2002 2002 MG MG . H 8 MYR A 1 2003 2006 MYR MYR . I 6 GTP E 1 1000 1000 GTP GTP . J 7 MG E 1 1001 1001 MG MG . K 9 HOH A 1 2101 2004 HOH HOH . K 9 HOH A 2 2102 2005 HOH HOH . K 9 HOH A 3 2103 2003 HOH HOH . L 9 HOH E 1 1101 1007 HOH HOH . L 9 HOH E 2 1102 1005 HOH HOH . L 9 HOH E 3 1103 1002 HOH HOH . L 9 HOH E 4 1104 1006 HOH HOH . L 9 HOH E 5 1105 1000 HOH HOH . L 9 HOH E 6 1106 1003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 6 200.939 234.337 213.509 1 16.89 ? PG GTP 1000 E 1 HETATM 2 O O1G GTP . . . I 6 202.005 233.658 212.742 1 15.79 ? O1G GTP 1000 E 1 HETATM 3 O O2G GTP . . . I 6 199.683 233.55 213.368 1 21.17 ? O2G GTP 1000 E 1 HETATM 4 O O3G GTP . . . I 6 201.29 234.518 214.966 1 23.39 ? O3G GTP 1000 E 1 HETATM 5 O O3B GTP . . . I 6 200.721 235.792 212.912 1 16.34 ? O3B GTP 1000 E 1 HETATM 6 P PB GTP . . . I 6 199.868 236.802 213.792 1 12.51 ? PB GTP 1000 E 1 HETATM 7 O O1B GTP . . . I 6 198.447 236.725 213.384 1 14.54 ? O1B GTP 1000 E 1 HETATM 8 O O2B GTP . . . I 6 200.07 236.542 215.257 1 20.41 ? O2B GTP 1000 E 1 HETATM 9 O O3A GTP . . . I 6 200.386 238.222 213.363 1 18.8 ? O3A GTP 1000 E 1 HETATM 10 P PA GTP . . . I 6 201.212 239.136 214.357 1 16.8 ? PA GTP 1000 E 1 HETATM 11 O O1A GTP . . . I 6 200.306 239.555 215.455 1 14.68 ? O1A GTP 1000 E 1 HETATM 12 O O2A GTP . . . I 6 202.501 238.555 214.839 1 23.59 ? O2A GTP 1000 E 1 HETATM 13 O O5' GTP . . . I 6 201.425 240.358 213.376 1 23.77 ? O5' GTP 1000 E 1 HETATM 14 C C5' GTP . . . I 6 202.264 240.193 212.271 1 23.01 ? C5' GTP 1000 E 1 HETATM 15 C C4' GTP . . . I 6 202.915 241.526 212.017 1 25.23 ? C4' GTP 1000 E 1 HETATM 16 O O4' GTP . . . I 6 202.052 242.402 211.339 1 32.28 ? O4' GTP 1000 E 1 HETATM 17 C C3' GTP . . . I 6 203.395 242.223 213.271 1 28.04 ? C3' GTP 1000 E 1 HETATM 18 O O3' GTP . . . I 6 204.736 241.935 213.561 1 36.4 ? O3' GTP 1000 E 1 HETATM 19 C C2' GTP . . . I 6 203.26 243.666 212.926 1 30.27 ? C2' GTP 1000 E 1 HETATM 20 O O2' GTP . . . I 6 204.474 244.088 212.36 1 38.56 ? O2' GTP 1000 E 1 HETATM 21 C C1' GTP . . . I 6 202.186 243.705 211.86 1 31.34 ? C1' GTP 1000 E 1 HETATM 22 N N9 GTP . . . I 6 200.905 244.143 212.419 1 29.98 ? N9 GTP 1000 E 1 HETATM 23 C C8 GTP . . . I 6 200.127 243.488 213.319 1 25.38 ? C8 GTP 1000 E 1 HETATM 24 N N7 GTP . . . I 6 199.057 244.253 213.58 1 24.76 ? N7 GTP 1000 E 1 HETATM 25 C C5 GTP . . . I 6 199.14 245.379 212.845 1 28.7 ? C5 GTP 1000 E 1 HETATM 26 C C6 GTP . . . I 6 198.334 246.491 212.72 1 29.2 ? C6 GTP 1000 E 1 HETATM 27 O O6 GTP . . . I 6 197.297 246.592 213.343 1 33.8 ? O6 GTP 1000 E 1 HETATM 28 N N1 GTP . . . I 6 198.692 247.496 211.871 1 29.2 ? N1 GTP 1000 E 1 HETATM 29 C C2 GTP . . . I 6 199.854 247.41 211.156 1 30.55 ? C2 GTP 1000 E 1 HETATM 30 N N2 GTP . . . I 6 200.188 248.395 210.351 1 34.95 ? N2 GTP 1000 E 1 HETATM 31 N N3 GTP . . . I 6 200.659 246.314 211.279 1 31.2 ? N3 GTP 1000 E 1 HETATM 32 C C4 GTP . . . I 6 200.304 245.32 212.117 1 30.77 ? C4 GTP 1000 E 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #