data_9MHF # _model_server_result.job_id 9Nsr2kUIdGHg7oRVZfqqiQ _model_server_result.datetime_utc '2025-03-25 21:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2003}' # _entry.id 9MHF # _exptl.entry_id 9MHF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 228.371 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MHF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 53 A LYS 53 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc2 A OD1 ASN 153 A ASN 153 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 A OD2 ASP 166 A ASP 166 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc4 F O3G GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 F O3B GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc6 F O1B GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc7 F O2A GTP . A GTP 2001 1_555 G MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc8 G MG MG . A MG 2002 1_555 K O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc9 E OG SER 46 E SER 25 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc10 E OG1 THR 64 E THR 43 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 E OD2 ASP 87 E ASP 66 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc12 I O3G GTP . E GTP 1000 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc13 I O2B GTP . E GTP 1000 1_555 J MG MG . E MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc14 J MG MG . E MG 1001 1_555 L O HOH . E HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 J MG MG . E MG 1001 1_555 L O HOH . E HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 287 n n C1 O2 MYR sing 288 n n C1 C2 MYR sing 289 n n O2 HO2 MYR sing 290 n n C2 C3 MYR sing 291 n n C2 H21 MYR sing 292 n n C2 H22 MYR sing 293 n n C3 C4 MYR sing 294 n n C3 H31 MYR sing 295 n n C3 H32 MYR sing 296 n n C4 C5 MYR sing 297 n n C4 H41 MYR sing 298 n n C4 H42 MYR sing 299 n n C5 C6 MYR sing 300 n n C5 H51 MYR sing 301 n n C5 H52 MYR sing 302 n n C6 C7 MYR sing 303 n n C6 H61 MYR sing 304 n n C6 H62 MYR sing 305 n n C7 C8 MYR sing 306 n n C7 H71 MYR sing 307 n n C7 H72 MYR sing 308 n n C8 C9 MYR sing 309 n n C8 H81 MYR sing 310 n n C8 H82 MYR sing 311 n n C9 C10 MYR sing 312 n n C9 H91 MYR sing 313 n n C9 H92 MYR sing 314 n n C10 C11 MYR sing 315 n n C10 H101 MYR sing 316 n n C10 H102 MYR sing 317 n n C11 C12 MYR sing 318 n n C11 H111 MYR sing 319 n n C11 H112 MYR sing 320 n n C12 C13 MYR sing 321 n n C12 H121 MYR sing 322 n n C12 H122 MYR sing 323 n n C13 C14 MYR sing 324 n n C13 H131 MYR sing 325 n n C13 H132 MYR sing 326 n n C14 H141 MYR sing 327 n n C14 H142 MYR sing 328 n n C14 H143 MYR sing 329 n n # _atom_sites.entry_id 9MHF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GTP A 1 2001 2001 GTP GTP . G 7 MG A 1 2002 2002 MG MG . H 8 MYR A 1 2003 2006 MYR MYR . I 6 GTP E 1 1000 1000 GTP GTP . J 7 MG E 1 1001 1001 MG MG . K 9 HOH A 1 2101 2004 HOH HOH . K 9 HOH A 2 2102 2005 HOH HOH . K 9 HOH A 3 2103 2003 HOH HOH . L 9 HOH E 1 1101 1007 HOH HOH . L 9 HOH E 2 1102 1005 HOH HOH . L 9 HOH E 3 1103 1002 HOH HOH . L 9 HOH E 4 1104 1006 HOH HOH . L 9 HOH E 5 1105 1000 HOH HOH . L 9 HOH E 6 1106 1003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . H 8 207.792 136.73 181.039 1 65.13 ? C1 MYR 2003 A 1 HETATM 2 O O1 MYR . . . H 8 206.792 136.427 180.361 1 66.49 ? O1 MYR 2003 A 1 HETATM 3 O O2 MYR . . . H 8 208.985 136.584 180.709 1 66.86 ? O2 MYR 2003 A 1 HETATM 4 C C2 MYR . . . H 8 207.526 137.315 182.437 1 58.05 ? C2 MYR 2003 A 1 HETATM 5 C C3 MYR . . . H 8 208.384 138.507 182.818 1 58.73 ? C3 MYR 2003 A 1 HETATM 6 C C4 MYR . . . H 8 208.042 139.044 184.191 1 61.34 ? C4 MYR 2003 A 1 HETATM 7 C C5 MYR . . . H 8 208.552 140.449 184.459 1 59.13 ? C5 MYR 2003 A 1 HETATM 8 C C6 MYR . . . H 8 208.097 140.95 185.821 1 59.3 ? C6 MYR 2003 A 1 HETATM 9 C C7 MYR . . . H 8 208.194 142.45 186.007 1 53.93 ? C7 MYR 2003 A 1 HETATM 10 C C8 MYR . . . H 8 207.708 142.907 187.368 1 50.75 ? C8 MYR 2003 A 1 HETATM 11 C C9 MYR . . . H 8 207.835 144.408 187.533 1 54.41 ? C9 MYR 2003 A 1 HETATM 12 C C10 MYR . . . H 8 206.995 144.992 188.651 1 54.45 ? C10 MYR 2003 A 1 HETATM 13 C C11 MYR . . . H 8 207.498 144.619 190.035 1 56.15 ? C11 MYR 2003 A 1 HETATM 14 C C12 MYR . . . H 8 206.457 144.844 191.118 1 58.83 ? C12 MYR 2003 A 1 HETATM 15 C C13 MYR . . . H 8 207.017 144.624 192.503 1 62.42 ? C13 MYR 2003 A 1 HETATM 16 C C14 MYR . . . H 8 205.933 144.552 193.559 1 73.99 ? C14 MYR 2003 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #