data_9MIE # _model_server_result.job_id FQVu3KnU3l8ezSB1uKV_7Q _model_server_result.datetime_utc '2025-03-04 17:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 9MIE # _exptl.entry_id 9MIE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MIE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 124 n n PG O2G ATP sing 125 n n PG O3G ATP sing 126 n n PG O3B ATP sing 127 n n O2G HOG2 ATP sing 128 n n O3G HOG3 ATP sing 129 n n PB O1B ATP doub 130 n n PB O2B ATP sing 131 n n PB O3B ATP sing 132 n n PB O3A ATP sing 133 n n O2B HOB2 ATP sing 134 n n PA O1A ATP doub 135 n n PA O2A ATP sing 136 n n PA O3A ATP sing 137 n n PA O5' ATP sing 138 n n O2A HOA2 ATP sing 139 n n O5' C5' ATP sing 140 n n C5' C4' ATP sing 141 n n C5' "H5'1" ATP sing 142 n n C5' "H5'2" ATP sing 143 n n C4' O4' ATP sing 144 n n C4' C3' ATP sing 145 n n C4' H4' ATP sing 146 n n O4' C1' ATP sing 147 n n C3' O3' ATP sing 148 n n C3' C2' ATP sing 149 n n C3' H3' ATP sing 150 n n O3' HO3' ATP sing 151 n n C2' O2' ATP sing 152 n n C2' C1' ATP sing 153 n n C2' H2' ATP sing 154 n n O2' HO2' ATP sing 155 n n C1' N9 ATP sing 156 n n C1' H1' ATP sing 157 n n N9 C8 ATP sing 158 n y N9 C4 ATP sing 159 n y C8 N7 ATP doub 160 n y C8 H8 ATP sing 161 n n N7 C5 ATP sing 162 n y C5 C6 ATP sing 163 n y C5 C4 ATP doub 164 n y C6 N6 ATP sing 165 n n C6 N1 ATP doub 166 n y N6 HN61 ATP sing 167 n n N6 HN62 ATP sing 168 n n N1 C2 ATP sing 169 n y C2 N3 ATP doub 170 n y C2 H2 ATP sing 171 n n N3 C4 ATP sing 172 n y # _atom_sites.entry_id 9MIE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP C 1 1201 1201 ATP ATP . C 3 A1BLP C 1 1202 1202 A1BLP LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 171.629 122.196 170.202 1 50.49 ? PG ATP 1201 C 1 HETATM 2 O O1G ATP . . . B 2 170.683 121.019 170.182 1 50.49 ? O1G ATP 1201 C 1 HETATM 3 O O2G ATP . . . B 2 171.15 123.396 169.423 1 50.49 -1 O2G ATP 1201 C 1 HETATM 4 O O3G ATP . . . B 2 172.178 122.529 171.569 1 50.49 ? O3G ATP 1201 C 1 HETATM 5 P PB ATP . . . B 2 172.731 121.062 167.897 1 50.49 ? PB ATP 1201 C 1 HETATM 6 O O1B ATP . . . B 2 172.24 119.645 168.055 1 50.49 -1 O1B ATP 1201 C 1 HETATM 7 O O2B ATP . . . B 2 171.94 122.042 167.068 1 50.49 ? O2B ATP 1201 C 1 HETATM 8 O O3B ATP . . . B 2 172.909 121.676 169.373 1 50.49 ? O3B ATP 1201 C 1 HETATM 9 P PA ATP . . . B 2 174.855 122.311 166.638 1 50.49 ? PA ATP 1201 C 1 HETATM 10 O O1A ATP . . . B 2 175.097 123.32 167.73 1 50.49 -1 O1A ATP 1201 C 1 HETATM 11 O O2A ATP . . . B 2 174 122.658 165.447 1 50.49 ? O2A ATP 1201 C 1 HETATM 12 O O3A ATP . . . B 2 174.247 121.008 167.355 1 50.49 ? O3A ATP 1201 C 1 HETATM 13 O O5' ATP . . . B 2 176.296 121.909 166.058 1 50.49 ? O5' ATP 1201 C 1 HETATM 14 C C5' ATP . . . B 2 177.134 122.979 165.629 1 50.49 ? C5' ATP 1201 C 1 HETATM 15 C C4' ATP . . . B 2 178.259 122.477 164.743 1 50.49 ? C4' ATP 1201 C 1 HETATM 16 O O4' ATP . . . B 2 177.717 121.897 163.559 1 50.49 ? O4' ATP 1201 C 1 HETATM 17 C C3' ATP . . . B 2 179.142 123.632 164.312 1 50.49 ? C3' ATP 1201 C 1 HETATM 18 O O3' ATP . . . B 2 180.465 123.45 164.819 1 50.49 ? O3' ATP 1201 C 1 HETATM 19 C C2' ATP . . . B 2 179.165 123.592 162.801 1 50.49 ? C2' ATP 1201 C 1 HETATM 20 O O2' ATP . . . B 2 180.513 123.529 162.333 1 50.49 ? O2' ATP 1201 C 1 HETATM 21 C C1' ATP . . . B 2 178.443 122.321 162.407 1 50.49 ? C1' ATP 1201 C 1 HETATM 22 N N9 ATP . . . B 2 177.491 122.568 161.301 1 50.49 ? N9 ATP 1201 C 1 HETATM 23 C C8 ATP . . . B 2 176.226 122.121 161.273 1 50.49 ? C8 ATP 1201 C 1 HETATM 24 N N7 ATP . . . B 2 175.595 122.485 160.133 1 50.49 ? N7 ATP 1201 C 1 HETATM 25 C C5 ATP . . . B 2 176.475 123.182 159.406 1 50.49 ? C5 ATP 1201 C 1 HETATM 26 C C6 ATP . . . B 2 176.448 123.856 158.096 1 50.49 ? C6 ATP 1201 C 1 HETATM 27 N N6 ATP . . . B 2 175.328 123.845 157.34 1 50.49 ? N6 ATP 1201 C 1 HETATM 28 N N1 ATP . . . B 2 177.573 124.475 157.684 1 50.49 ? N1 ATP 1201 C 1 HETATM 29 C C2 ATP . . . B 2 178.684 124.483 158.439 1 50.49 ? C2 ATP 1201 C 1 HETATM 30 N N3 ATP . . . B 2 178.78 123.888 159.639 1 50.49 ? N3 ATP 1201 C 1 HETATM 31 C C4 ATP . . . B 2 177.726 123.23 160.17 1 50.49 ? C4 ATP 1201 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #