data_9MIG # _model_server_result.job_id yHFzXdOTvQtZcLAHc_hqxA _model_server_result.datetime_utc '2025-03-04 17:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 9MIG # _exptl.entry_id 9MIG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MIG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 127 n n PG O2G ATP sing 128 n n PG O3G ATP sing 129 n n PG O3B ATP sing 130 n n O2G HOG2 ATP sing 131 n n O3G HOG3 ATP sing 132 n n PB O1B ATP doub 133 n n PB O2B ATP sing 134 n n PB O3B ATP sing 135 n n PB O3A ATP sing 136 n n O2B HOB2 ATP sing 137 n n PA O1A ATP doub 138 n n PA O2A ATP sing 139 n n PA O3A ATP sing 140 n n PA O5' ATP sing 141 n n O2A HOA2 ATP sing 142 n n O5' C5' ATP sing 143 n n C5' C4' ATP sing 144 n n C5' "H5'1" ATP sing 145 n n C5' "H5'2" ATP sing 146 n n C4' O4' ATP sing 147 n n C4' C3' ATP sing 148 n n C4' H4' ATP sing 149 n n O4' C1' ATP sing 150 n n C3' O3' ATP sing 151 n n C3' C2' ATP sing 152 n n C3' H3' ATP sing 153 n n O3' HO3' ATP sing 154 n n C2' O2' ATP sing 155 n n C2' C1' ATP sing 156 n n C2' H2' ATP sing 157 n n O2' HO2' ATP sing 158 n n C1' N9 ATP sing 159 n n C1' H1' ATP sing 160 n n N9 C8 ATP sing 161 n y N9 C4 ATP sing 162 n y C8 N7 ATP doub 163 n y C8 H8 ATP sing 164 n n N7 C5 ATP sing 165 n y C5 C6 ATP sing 166 n y C5 C4 ATP doub 167 n y C6 N6 ATP sing 168 n n C6 N1 ATP doub 169 n y N6 HN61 ATP sing 170 n n N6 HN62 ATP sing 171 n n N1 C2 ATP sing 172 n y C2 N3 ATP doub 173 n y C2 H2 ATP sing 174 n n N3 C4 ATP sing 175 n y # _atom_sites.entry_id 9MIG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP C 1 1201 1201 ATP ATP . C 3 A1BLQ C 1 1202 1202 A1BLQ LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 143.553 92.471 94.235 1 35.14 ? PG ATP 1201 C 1 HETATM 2 O O1G ATP . . . B 2 143.945 91.687 93.051 1 31.97 ? O1G ATP 1201 C 1 HETATM 3 O O2G ATP . . . B 2 144.73 93.502 94.597 1 27.38 ? O2G ATP 1201 C 1 HETATM 4 O O3G ATP . . . B 2 142.262 93.326 93.847 1 23.34 ? O3G ATP 1201 C 1 HETATM 5 P PB ATP . . . B 2 144.424 91.2 96.466 1 17.46 ? PB ATP 1201 C 1 HETATM 6 O O1B ATP . . . B 2 145.725 91.414 95.8 1 19.84 ? O1B ATP 1201 C 1 HETATM 7 O O2B ATP . . . B 2 144.359 92.242 97.669 1 15.39 ? O2B ATP 1201 C 1 HETATM 8 O O3B ATP . . . B 2 143.187 91.468 95.455 1 23.97 ? O3B ATP 1201 C 1 HETATM 9 P PA ATP . . . B 2 143.094 89.346 97.861 1 14.57 ? PA ATP 1201 C 1 HETATM 10 O O1A ATP . . . B 2 142.001 88.983 96.938 1 19.74 ? O1A ATP 1201 C 1 HETATM 11 O O2A ATP . . . B 2 142.601 90.599 98.716 1 15.26 ? O2A ATP 1201 C 1 HETATM 12 O O3A ATP . . . B 2 144.424 89.681 97.021 1 17.92 ? O3A ATP 1201 C 1 HETATM 13 O O5' ATP . . . B 2 143.384 88.133 98.898 1 13.18 ? O5' ATP 1201 C 1 HETATM 14 C C5' ATP . . . B 2 142.995 86.823 98.412 1 14.23 ? C5' ATP 1201 C 1 HETATM 15 C C4' ATP . . . B 2 143.027 85.838 99.603 1 14.02 ? C4' ATP 1201 C 1 HETATM 16 O O4' ATP . . . B 2 143.756 86.438 100.704 1 12.79 ? O4' ATP 1201 C 1 HETATM 17 C C3' ATP . . . B 2 141.613 85.542 100.15 1 18.89 ? C3' ATP 1201 C 1 HETATM 18 O O3' ATP . . . B 2 141.074 84.362 99.538 1 27.7 ? O3' ATP 1201 C 1 HETATM 19 C C2' ATP . . . B 2 141.86 85.268 101.643 1 18.47 ? C2' ATP 1201 C 1 HETATM 20 O O2' ATP . . . B 2 142.076 83.866 101.834 1 21.34 ? O2' ATP 1201 C 1 HETATM 21 C C1' ATP . . . B 2 143.123 86.101 101.974 1 12.81 ? C1' ATP 1201 C 1 HETATM 22 N N9 ATP . . . B 2 142.769 87.337 102.71 1 13.21 ? N9 ATP 1201 C 1 HETATM 23 C C8 ATP . . . B 2 143.297 88.575 102.447 1 14.1 ? C8 ATP 1201 C 1 HETATM 24 N N7 ATP . . . B 2 143.193 89.357 103.483 1 14.65 ? N7 ATP 1201 C 1 HETATM 25 C C5 ATP . . . B 2 142.578 88.694 104.479 1 12.06 ? C5 ATP 1201 C 1 HETATM 26 C C6 ATP . . . B 2 142.2 89.022 105.812 1 16.85 ? C6 ATP 1201 C 1 HETATM 27 N N6 ATP . . . B 2 142.484 90.273 106.308 1 21.22 ? N6 ATP 1201 C 1 HETATM 28 N N1 ATP . . . B 2 141.563 88.096 106.561 1 21.86 ? N1 ATP 1201 C 1 HETATM 29 C C2 ATP . . . B 2 141.295 86.869 106.072 1 21.96 ? C2 ATP 1201 C 1 HETATM 30 N N3 ATP . . . B 2 141.64 86.516 104.822 1 15.93 ? N3 ATP 1201 C 1 HETATM 31 C C4 ATP . . . B 2 142.286 87.384 104.002 1 11.8 ? C4 ATP 1201 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #