data_9MJL # _model_server_result.job_id 9pFMiZzxKENkM-wMyWK0Xw _model_server_result.datetime_utc '2025-08-28 21:15:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9mjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 9MJL # _exptl.entry_id 9MJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.529 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-({(1R)-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl}amino)-8-(oxan-4-yl)-1,3,4,8-tetrahydropyrido[3,4-c][1,6]naphthyridin-9(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9MJL _cell.length_a 38.33 _cell.length_b 83.62 _cell.length_c 168.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9MJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H29 F3 N4 O2' _chem_comp.formula_weight 486.529 _chem_comp.id A1BME _chem_comp.mon_nstd_flag . _chem_comp.name 6-({(1R)-1-[2-methyl-3-(trifluoromethyl)phenyl]ethyl}amino)-8-(oxan-4-yl)-1,3,4,8-tetrahydropyrido[3,4-c][1,6]naphthyridin-9(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 A1BME doub 1 n n C7 C6 A1BME sing 2 n n C7 N2 A1BME sing 3 n n C6 C3 A1BME doub 4 n n C11 N3 A1BME sing 5 n n C11 C2 A1BME sing 6 n n C12 N2 A1BME sing 7 n n C12 C16 A1BME sing 8 n n C12 C13 A1BME sing 9 n n N2 C8 A1BME sing 10 n n C15 C16 A1BME sing 11 n n C15 O1 A1BME sing 12 n n N3 C10 A1BME sing 13 n n C3 C2 A1BME sing 14 n n C3 C4 A1BME sing 15 n n C2 C1 A1BME doub 16 n n C10 C9 A1BME sing 17 n n C14 C13 A1BME sing 18 n n C14 O1 A1BME sing 19 n n C8 C4 A1BME doub 20 n n C4 C5 A1BME sing 21 n n C1 C9 A1BME sing 22 n n C1 N1 A1BME sing 23 n n F3 C26 A1BME sing 24 n n C5 N1 A1BME doub 25 n n C5 N4 A1BME sing 26 n n F1 C26 A1BME sing 27 n n C26 C21 A1BME sing 28 n n C26 F2 A1BME sing 29 n n C22 C21 A1BME doub 30 n y C22 C23 A1BME sing 31 n y C21 C20 A1BME sing 32 n y N4 C17 A1BME sing 33 n n C23 C24 A1BME doub 34 n y C20 C25 A1BME sing 35 n n C20 C18 A1BME doub 36 n y C24 C18 A1BME sing 37 n y C18 C17 A1BME sing 38 n n C17 C19 A1BME sing 39 n n N3 H32 A1BME sing 40 n n C6 HC6 A1BME sing 41 n n C8 HC8 A1BME sing 42 n n C10 H102 A1BME sing 43 n n C10 H101 A1BME sing 44 n n C13 H131 A1BME sing 45 n n C13 H132 A1BME sing 46 n n C15 H152 A1BME sing 47 n n C15 H151 A1BME sing 48 n n C17 HC17 A1BME sing 49 n n C22 HC22 A1BME sing 50 n n C24 HC24 A1BME sing 51 n n C9 H92 A1BME sing 52 n n C9 H91 A1BME sing 53 n n C11 H112 A1BME sing 54 n n C11 H111 A1BME sing 55 n n C12 HC12 A1BME sing 56 n n C14 H141 A1BME sing 57 n n C14 H142 A1BME sing 58 n n C16 H161 A1BME sing 59 n n C16 H162 A1BME sing 60 n n N4 HN4 A1BME sing 61 n n C19 H192 A1BME sing 62 n n C19 H191 A1BME sing 63 n n C19 H193 A1BME sing 64 n n C23 HC23 A1BME sing 65 n n C25 H251 A1BME sing 66 n n C25 H253 A1BME sing 67 n n C25 H252 A1BME sing 68 n n # _atom_sites.entry_id 9MJL _atom_sites.fract_transf_matrix[1][1] 0.026089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BME A 1 1101 1 A1BME LIG . C 3 EDO A 1 1102 1 EDO EDO . D 3 EDO A 1 1103 2 EDO EDO . E 4 HOH A 1 1201 20 HOH HOH . E 4 HOH A 2 1202 6 HOH HOH . E 4 HOH A 3 1203 49 HOH HOH . E 4 HOH A 4 1204 7 HOH HOH . E 4 HOH A 5 1205 19 HOH HOH . E 4 HOH A 6 1206 38 HOH HOH . E 4 HOH A 7 1207 5 HOH HOH . E 4 HOH A 8 1208 9 HOH HOH . E 4 HOH A 9 1209 6 HOH HOH . E 4 HOH A 10 1210 12 HOH HOH . E 4 HOH A 11 1211 91 HOH HOH . E 4 HOH A 12 1212 37 HOH HOH . E 4 HOH A 13 1213 10 HOH HOH . E 4 HOH A 14 1214 56 HOH HOH . E 4 HOH A 15 1215 72 HOH HOH . E 4 HOH A 16 1216 99 HOH HOH . E 4 HOH A 17 1217 43 HOH HOH . E 4 HOH A 18 1218 52 HOH HOH . E 4 HOH A 19 1219 18 HOH HOH . E 4 HOH A 20 1220 15 HOH HOH . E 4 HOH A 21 1221 30 HOH HOH . E 4 HOH A 22 1222 64 HOH HOH . E 4 HOH A 23 1223 23 HOH HOH . E 4 HOH A 24 1224 41 HOH HOH . E 4 HOH A 25 1225 60 HOH HOH . E 4 HOH A 26 1226 4 HOH HOH . E 4 HOH A 27 1227 4 HOH HOH . E 4 HOH A 28 1228 17 HOH HOH . E 4 HOH A 29 1229 29 HOH HOH . E 4 HOH A 30 1230 34 HOH HOH . E 4 HOH A 31 1231 45 HOH HOH . E 4 HOH A 32 1232 3 HOH HOH . E 4 HOH A 33 1233 3 HOH HOH . E 4 HOH A 34 1234 36 HOH HOH . E 4 HOH A 35 1235 80 HOH HOH . E 4 HOH A 36 1236 2 HOH HOH . E 4 HOH A 37 1237 7 HOH HOH . E 4 HOH A 38 1238 74 HOH HOH . E 4 HOH A 39 1239 79 HOH HOH . E 4 HOH A 40 1240 82 HOH HOH . E 4 HOH A 41 1241 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1BME . . . B 2 3.486 33.604 -42.085 1 40.34 ? N1 A1BME 1101 A 1 HETATM 2 N N3 A1BME . . . B 2 6.601 31.543 -44.078 1 48.02 1 N3 A1BME 1101 A 1 HETATM 3 C C4 A1BME . . . B 2 1.777 32.251 -43.115 1 40.77 ? C4 A1BME 1101 A 1 HETATM 4 C C5 A1BME . . . B 2 2.243 33.247 -42.169 1 41.33 ? C5 A1BME 1101 A 1 HETATM 5 C C6 A1BME . . . B 2 2.367 30.7 -44.842 1 41.93 ? C6 A1BME 1101 A 1 HETATM 6 C C7 A1BME . . . B 2 0.943 30.291 -44.988 1 42.44 ? C7 A1BME 1101 A 1 HETATM 7 C C8 A1BME . . . B 2 0.496 31.913 -43.215 1 39.24 ? C8 A1BME 1101 A 1 HETATM 8 C C10 A1BME . . . B 2 6.871 32.949 -43.737 1 38.05 ? C10 A1BME 1101 A 1 HETATM 9 C C13 A1BME . . . B 2 -1.7 29.515 -43.1 1 36.46 ? C13 A1BME 1101 A 1 HETATM 10 C C15 A1BME . . . B 2 -3.821 31.204 -44.103 1 38.63 ? C15 A1BME 1101 A 1 HETATM 11 C C17 A1BME . . . B 2 1.589 34.796 -40.303 1 48.11 ? C17 A1BME 1101 A 1 HETATM 12 C C20 A1BME . . . B 2 2.133 37.203 -41.023 1 50.91 ? C20 A1BME 1101 A 1 HETATM 13 C C21 A1BME . . . B 2 1.7 38.504 -41.413 1 52.93 ? C21 A1BME 1101 A 1 HETATM 14 C C22 A1BME . . . B 2 0.319 38.783 -41.505 1 51.58 ? C22 A1BME 1101 A 1 HETATM 15 C C24 A1BME . . . B 2 -0.212 36.506 -40.829 1 51.24 ? C24 A1BME 1101 A 1 HETATM 16 C C26 A1BME . . . B 2 2.716 39.604 -41.735 1 55.12 ? C26 A1BME 1101 A 1 HETATM 17 C C1 A1BME . . . B 2 4.487 32.983 -42.865 1 42.63 ? C1 A1BME 1101 A 1 HETATM 18 C C2 A1BME . . . B 2 4.155 32.022 -43.786 1 41.63 ? C2 A1BME 1101 A 1 HETATM 19 C C3 A1BME . . . B 2 2.747 31.635 -43.937 1 43.09 ? C3 A1BME 1101 A 1 HETATM 20 N N2 A1BME . . . B 2 0.058 30.939 -44.135 1 43.49 ? N2 A1BME 1101 A 1 HETATM 21 C C9 A1BME . . . B 2 5.921 33.414 -42.63 1 39.71 ? C9 A1BME 1101 A 1 HETATM 22 C C11 A1BME . . . B 2 5.244 31.343 -44.62 1 41.42 ? C11 A1BME 1101 A 1 HETATM 23 C C12 A1BME . . . B 2 -1.38 30.578 -44.159 1 40.51 ? C12 A1BME 1101 A 1 HETATM 24 C C14 A1BME . . . B 2 -3.167 29.082 -43.226 1 40.66 ? C14 A1BME 1101 A 1 HETATM 25 O O1 A1BME . . . B 2 -4.02 30.214 -43.095 1 43.2 ? O1 A1BME 1101 A 1 HETATM 26 C C16 A1BME . . . B 2 -2.385 31.741 -44.031 1 40.25 ? C16 A1BME 1101 A 1 HETATM 27 N N4 A1BME . . . B 2 1.272 33.799 -41.328 1 45.13 ? N4 A1BME 1101 A 1 HETATM 28 C C18 A1BME . . . B 2 1.163 36.202 -40.728 1 50.29 ? C18 A1BME 1101 A 1 HETATM 29 C C19 A1BME . . . B 2 0.961 34.442 -38.94 1 40.4 ? C19 A1BME 1101 A 1 HETATM 30 C C23 A1BME . . . B 2 -0.629 37.788 -41.215 1 50.61 ? C23 A1BME 1101 A 1 HETATM 31 C C25 A1BME . . . B 2 3.625 36.88 -40.931 1 52.42 ? C25 A1BME 1101 A 1 HETATM 32 O O2 A1BME . . . B 2 0.563 29.435 -45.791 1 46.23 ? O2 A1BME 1101 A 1 HETATM 33 F F1 A1BME . . . B 2 2.113 40.729 -42.122 1 59.05 ? F1 A1BME 1101 A 1 HETATM 34 F F2 A1BME . . . B 2 3.441 39.907 -40.658 1 61.62 ? F2 A1BME 1101 A 1 HETATM 35 F F3 A1BME . . . B 2 3.534 39.239 -42.724 1 56.17 ? F3 A1BME 1101 A 1 HETATM 36 H H32 A1BME . . . B 2 6.701 30.973 -43.249 1 50.02 ? H32 A1BME 1101 A 1 HETATM 37 H HC6 A1BME . . . B 2 3.102 30.23 -45.471 1 43.93 ? HC6 A1BME 1101 A 1 HETATM 38 H HC8 A1BME . . . B 2 -0.28 32.333 -42.622 1 41.24 ? HC8 A1BME 1101 A 1 HETATM 39 H H102 A1BME . . . B 2 6.749 33.565 -44.63 1 40.05 ? H102 A1BME 1101 A 1 HETATM 40 H H101 A1BME . . . B 2 7.909 33.049 -43.42 1 40.05 ? H101 A1BME 1101 A 1 HETATM 41 H H131 A1BME . . . B 2 -1.521 29.913 -42.102 1 38.46 ? H131 A1BME 1101 A 1 HETATM 42 H H132 A1BME . . . B 2 -1.049 28.648 -43.22 1 38.46 ? H132 A1BME 1101 A 1 HETATM 43 H H152 A1BME . . . B 2 -4.03 30.782 -45.087 1 40.63 ? H152 A1BME 1101 A 1 HETATM 44 H H151 A1BME . . . B 2 -4.53 32.018 -43.953 1 40.63 ? H151 A1BME 1101 A 1 HETATM 45 H HC17 A1BME . . . B 2 2.656 34.755 -40.11 1 50.11 ? HC17 A1BME 1101 A 1 HETATM 46 H HC22 A1BME . . . B 2 -0.013 39.764 -41.802 1 53.58 ? HC22 A1BME 1101 A 1 HETATM 47 H HC24 A1BME . . . B 2 -0.949 35.747 -40.61 1 53.24 ? HC24 A1BME 1101 A 1 HETATM 48 H H92 A1BME . . . B 2 5.97 34.498 -42.517 1 41.71 ? H92 A1BME 1101 A 1 HETATM 49 H H91 A1BME . . . B 2 6.229 32.982 -41.677 1 41.71 ? H91 A1BME 1101 A 1 HETATM 50 H H112 A1BME . . . B 2 5.083 30.268 -44.679 1 43.42 ? H112 A1BME 1101 A 1 HETATM 51 H H111 A1BME . . . B 2 5.202 31.741 -45.629 1 43.42 ? H111 A1BME 1101 A 1 HETATM 52 H HC12 A1BME . . . B 2 -1.611 30.137 -45.13 1 42.51 ? HC12 A1BME 1101 A 1 HETATM 53 H H141 A1BME . . . B 2 -3.414 28.362 -42.446 1 42.66 ? H141 A1BME 1101 A 1 HETATM 54 H H142 A1BME . . . B 2 -3.347 28.588 -44.183 1 42.66 ? H142 A1BME 1101 A 1 HETATM 55 H H161 A1BME . . . B 2 -2.223 32.452 -44.835 1 42.25 ? H161 A1BME 1101 A 1 HETATM 56 H H162 A1BME . . . B 2 -2.288 32.289 -43.097 1 42.25 ? H162 A1BME 1101 A 1 HETATM 57 H HN4 A1BME . . . B 2 0.293 33.503 -41.349 1 47.13 ? HN4 A1BME 1101 A 1 HETATM 58 H H192 A1BME . . . B 2 -0.124 34.537 -38.93 1 42.4 ? H192 A1BME 1101 A 1 HETATM 59 H H191 A1BME . . . B 2 1.348 35.096 -38.158 1 42.4 ? H191 A1BME 1101 A 1 HETATM 60 H H193 A1BME . . . B 2 1.179 33.418 -38.649 1 42.4 ? H193 A1BME 1101 A 1 HETATM 61 H HC23 A1BME . . . B 2 -1.684 38.011 -41.29 1 52.61 ? HC23 A1BME 1101 A 1 HETATM 62 H H251 A1BME . . . B 2 4.287 37.739 -40.992 1 54.42 ? H251 A1BME 1101 A 1 HETATM 63 H H253 A1BME . . . B 2 3.908 36.209 -41.741 1 54.42 ? H253 A1BME 1101 A 1 HETATM 64 H H252 A1BME . . . B 2 3.87 36.4 -39.99 1 54.42 ? H252 A1BME 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 64 #